data_9CLQ # _model_server_result.job_id NGQodH2I-O7ImLuIvrVcdg _model_server_result.datetime_utc '2025-07-20 11:57:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9clq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":406}' # _entry.id 9CLQ # _exptl.entry_id 9CLQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CLQ _cell.length_a 97.836 _cell.length_b 97.836 _cell.length_c 69.292 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.097333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G O3G ANP . A ANP 406 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 G O1B ANP . A ANP 406 1_555 H MG MG . A MG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 H MG MG . A MG 407 1_555 I O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 H MG MG . A MG 407 1_555 I O HOH . A HOH 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc5 H MG MG . A MG 407 1_555 I O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc6 H MG MG . A MG 407 1_555 I O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 72 n n PG O2G ANP sing 73 n n PG O3G ANP sing 74 n n PG N3B ANP sing 75 n n O2G HOG2 ANP sing 76 n n O3G HOG3 ANP sing 77 n n PB O1B ANP doub 78 n n PB O2B ANP sing 79 n n PB N3B ANP sing 80 n n PB O3A ANP sing 81 n n O2B HOB2 ANP sing 82 n n N3B HNB1 ANP sing 83 n n PA O1A ANP doub 84 n n PA O2A ANP sing 85 n n PA O3A ANP sing 86 n n PA O5' ANP sing 87 n n O2A HOA2 ANP sing 88 n n O5' C5' ANP sing 89 n n C5' C4' ANP sing 90 n n C5' "H5'1" ANP sing 91 n n C5' "H5'2" ANP sing 92 n n C4' O4' ANP sing 93 n n C4' C3' ANP sing 94 n n C4' H4' ANP sing 95 n n O4' C1' ANP sing 96 n n C3' O3' ANP sing 97 n n C3' C2' ANP sing 98 n n C3' H3' ANP sing 99 n n O3' HO3' ANP sing 100 n n C2' O2' ANP sing 101 n n C2' C1' ANP sing 102 n n C2' H2' ANP sing 103 n n O2' HO2' ANP sing 104 n n C1' N9 ANP sing 105 n n C1' H1' ANP sing 106 n n N9 C8 ANP sing 107 n y N9 C4 ANP sing 108 n y C8 N7 ANP doub 109 n y C8 H8 ANP sing 110 n n N7 C5 ANP sing 111 n y C5 C6 ANP sing 112 n y C5 C4 ANP doub 113 n y C6 N6 ANP sing 114 n n C6 N1 ANP doub 115 n y N6 HN61 ANP sing 116 n n N6 HN62 ANP sing 117 n n N1 C2 ANP sing 118 n y C2 N3 ANP doub 119 n y C2 H2 ANP sing 120 n n N3 C4 ANP sing 121 n y # _atom_sites.entry_id 9CLQ _atom_sites.fract_transf_matrix[1][1] 0.010221 _atom_sites.fract_transf_matrix[1][2] 0.005901 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AZA A 1 401 401 A1AZA LIG . C 3 ACT A 1 402 402 ACT ACT . D 4 EDO A 1 403 403 EDO EDO . E 4 EDO A 1 404 404 EDO EDO . F 4 EDO A 1 405 405 EDO EDO . G 5 ANP A 1 406 501 ANP ANP . H 6 MG A 1 407 1 MG MG . I 7 HOH A 1 501 118 HOH HOH . I 7 HOH A 2 502 19 HOH HOH . I 7 HOH A 3 503 70 HOH HOH . I 7 HOH A 4 504 59 HOH HOH . I 7 HOH A 5 505 138 HOH HOH . I 7 HOH A 6 506 32 HOH HOH . I 7 HOH A 7 507 62 HOH HOH . I 7 HOH A 8 508 45 HOH HOH . I 7 HOH A 9 509 69 HOH HOH . I 7 HOH A 10 510 67 HOH HOH . I 7 HOH A 11 511 151 HOH HOH . I 7 HOH A 12 512 179 HOH HOH . I 7 HOH A 13 513 147 HOH HOH . I 7 HOH A 14 514 93 HOH HOH . I 7 HOH A 15 515 64 HOH HOH . I 7 HOH A 16 516 42 HOH HOH . I 7 HOH A 17 517 91 HOH HOH . I 7 HOH A 18 518 133 HOH HOH . I 7 HOH A 19 519 129 HOH HOH . I 7 HOH A 20 520 4 HOH HOH . I 7 HOH A 21 521 157 HOH HOH . I 7 HOH A 22 522 14 HOH HOH . I 7 HOH A 23 523 152 HOH HOH . I 7 HOH A 24 524 30 HOH HOH . I 7 HOH A 25 525 115 HOH HOH . I 7 HOH A 26 526 180 HOH HOH . I 7 HOH A 27 527 24 HOH HOH . I 7 HOH A 28 528 156 HOH HOH . I 7 HOH A 29 529 60 HOH HOH . I 7 HOH A 30 530 5 HOH HOH . I 7 HOH A 31 531 178 HOH HOH . I 7 HOH A 32 532 47 HOH HOH . I 7 HOH A 33 533 41 HOH HOH . I 7 HOH A 34 534 174 HOH HOH . I 7 HOH A 35 535 13 HOH HOH . I 7 HOH A 36 536 23 HOH HOH . I 7 HOH A 37 537 96 HOH HOH . I 7 HOH A 38 538 55 HOH HOH . I 7 HOH A 39 539 144 HOH HOH . I 7 HOH A 40 540 107 HOH HOH . I 7 HOH A 41 541 137 HOH HOH . I 7 HOH A 42 542 114 HOH HOH . I 7 HOH A 43 543 2 HOH HOH . I 7 HOH A 44 544 27 HOH HOH . I 7 HOH A 45 545 66 HOH HOH . I 7 HOH A 46 546 6 HOH HOH . I 7 HOH A 47 547 8 HOH HOH . I 7 HOH A 48 548 21 HOH HOH . I 7 HOH A 49 549 102 HOH HOH . I 7 HOH A 50 550 124 HOH HOH . I 7 HOH A 51 551 87 HOH HOH . I 7 HOH A 52 552 1 HOH HOH . I 7 HOH A 53 553 3 HOH HOH . I 7 HOH A 54 554 38 HOH HOH . I 7 HOH A 55 555 68 HOH HOH . I 7 HOH A 56 556 108 HOH HOH . I 7 HOH A 57 557 171 HOH HOH . I 7 HOH A 58 558 165 HOH HOH . I 7 HOH A 59 559 168 HOH HOH . I 7 HOH A 60 560 46 HOH HOH . I 7 HOH A 61 561 113 HOH HOH . I 7 HOH A 62 562 71 HOH HOH . I 7 HOH A 63 563 136 HOH HOH . I 7 HOH A 64 564 7 HOH HOH . I 7 HOH A 65 565 104 HOH HOH . I 7 HOH A 66 566 17 HOH HOH . I 7 HOH A 67 567 121 HOH HOH . I 7 HOH A 68 568 43 HOH HOH . I 7 HOH A 69 569 143 HOH HOH . I 7 HOH A 70 570 134 HOH HOH . I 7 HOH A 71 571 159 HOH HOH . I 7 HOH A 72 572 84 HOH HOH . I 7 HOH A 73 573 86 HOH HOH . I 7 HOH A 74 574 12 HOH HOH . I 7 HOH A 75 575 53 HOH HOH . I 7 HOH A 76 576 22 HOH HOH . I 7 HOH A 77 577 150 HOH HOH . I 7 HOH A 78 578 9 HOH HOH . I 7 HOH A 79 579 77 HOH HOH . I 7 HOH A 80 580 127 HOH HOH . I 7 HOH A 81 581 61 HOH HOH . I 7 HOH A 82 582 80 HOH HOH . I 7 HOH A 83 583 170 HOH HOH . I 7 HOH A 84 584 176 HOH HOH . I 7 HOH A 85 585 25 HOH HOH . I 7 HOH A 86 586 85 HOH HOH . I 7 HOH A 87 587 183 HOH HOH . I 7 HOH A 88 588 39 HOH HOH . I 7 HOH A 89 589 100 HOH HOH . I 7 HOH A 90 590 172 HOH HOH . I 7 HOH A 91 591 52 HOH HOH . I 7 HOH A 92 592 82 HOH HOH . I 7 HOH A 93 593 181 HOH HOH . I 7 HOH A 94 594 148 HOH HOH . I 7 HOH A 95 595 160 HOH HOH . I 7 HOH A 96 596 72 HOH HOH . I 7 HOH A 97 597 26 HOH HOH . I 7 HOH A 98 598 40 HOH HOH . I 7 HOH A 99 599 90 HOH HOH . I 7 HOH A 100 600 11 HOH HOH . I 7 HOH A 101 601 105 HOH HOH . I 7 HOH A 102 602 109 HOH HOH . I 7 HOH A 103 603 139 HOH HOH . I 7 HOH A 104 604 65 HOH HOH . I 7 HOH A 105 605 15 HOH HOH . I 7 HOH A 106 606 94 HOH HOH . I 7 HOH A 107 607 78 HOH HOH . I 7 HOH A 108 608 173 HOH HOH . I 7 HOH A 109 609 140 HOH HOH . I 7 HOH A 110 610 98 HOH HOH . I 7 HOH A 111 611 111 HOH HOH . I 7 HOH A 112 612 164 HOH HOH . I 7 HOH A 113 613 88 HOH HOH . I 7 HOH A 114 614 123 HOH HOH . I 7 HOH A 115 615 149 HOH HOH . I 7 HOH A 116 616 122 HOH HOH . I 7 HOH A 117 617 44 HOH HOH . I 7 HOH A 118 618 119 HOH HOH . I 7 HOH A 119 619 56 HOH HOH . I 7 HOH A 120 620 35 HOH HOH . I 7 HOH A 121 621 81 HOH HOH . I 7 HOH A 122 622 112 HOH HOH . I 7 HOH A 123 623 50 HOH HOH . I 7 HOH A 124 624 167 HOH HOH . I 7 HOH A 125 625 103 HOH HOH . I 7 HOH A 126 626 154 HOH HOH . I 7 HOH A 127 627 57 HOH HOH . I 7 HOH A 128 628 145 HOH HOH . I 7 HOH A 129 629 169 HOH HOH . I 7 HOH A 130 630 76 HOH HOH . I 7 HOH A 131 631 135 HOH HOH . I 7 HOH A 132 632 141 HOH HOH . I 7 HOH A 133 633 128 HOH HOH . I 7 HOH A 134 634 73 HOH HOH . I 7 HOH A 135 635 116 HOH HOH . I 7 HOH A 136 636 166 HOH HOH . I 7 HOH A 137 637 37 HOH HOH . I 7 HOH A 138 638 182 HOH HOH . I 7 HOH A 139 639 175 HOH HOH . I 7 HOH A 140 640 51 HOH HOH . I 7 HOH A 141 641 120 HOH HOH . I 7 HOH A 142 642 130 HOH HOH . I 7 HOH A 143 643 142 HOH HOH . I 7 HOH A 144 644 132 HOH HOH . I 7 HOH A 145 645 58 HOH HOH . I 7 HOH A 146 646 177 HOH HOH . I 7 HOH A 147 647 79 HOH HOH . I 7 HOH A 148 648 106 HOH HOH . I 7 HOH A 149 649 146 HOH HOH . I 7 HOH A 150 650 33 HOH HOH . I 7 HOH A 151 651 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 5 -28.425 -14.204 -1.757 1 23.08 ? PG ANP 406 A 1 HETATM 2 O O1G ANP . . . G 5 -28.607 -13.375 -2.953 1 26 ? O1G ANP 406 A 1 HETATM 3 O O2G ANP . . . G 5 -28.151 -15.647 -2.244 1 22.16 ? O2G ANP 406 A 1 HETATM 4 O O3G ANP . . . G 5 -29.72 -14.208 -0.891 1 24.66 ? O3G ANP 406 A 1 HETATM 5 P PB ANP . . . G 5 -26.955 -13.693 0.623 1 18.7 ? PB ANP 406 A 1 HETATM 6 O O1B ANP . . . G 5 -28.07 -14.369 1.285 1 19.54 ? O1B ANP 406 A 1 HETATM 7 O O2B ANP . . . G 5 -25.592 -14.29 1.056 1 17.77 ? O2B ANP 406 A 1 HETATM 8 N N3B ANP . . . G 5 -27.086 -13.655 -0.996 1 21.35 ? N3B ANP 406 A 1 HETATM 9 P PA ANP . . . G 5 -27.016 -11.4 2.493 1 17.37 ? PA ANP 406 A 1 HETATM 10 O O1A ANP . . . G 5 -26.357 -12.227 3.596 1 16.77 ? O1A ANP 406 A 1 HETATM 11 O O2A ANP . . . G 5 -28.45 -11.041 2.856 1 14.27 ? O2A ANP 406 A 1 HETATM 12 O O3A ANP . . . G 5 -26.975 -12.166 1.092 1 16.28 ? O3A ANP 406 A 1 HETATM 13 O O5' ANP . . . G 5 -26.186 -10.054 2.234 1 16.67 ? O5' ANP 406 A 1 HETATM 14 C C5' ANP . . . G 5 -24.988 -10.078 1.457 1 16.73 ? C5' ANP 406 A 1 HETATM 15 C C4' ANP . . . G 5 -24.499 -8.636 1.369 1 19.6 ? C4' ANP 406 A 1 HETATM 16 O O4' ANP . . . G 5 -24.318 -8.124 2.694 1 18.05 ? O4' ANP 406 A 1 HETATM 17 C C3' ANP . . . G 5 -23.133 -8.559 0.68 1 19.66 ? C3' ANP 406 A 1 HETATM 18 O O3' ANP . . . G 5 -23.36 -8.416 -0.72 1 17.81 ? O3' ANP 406 A 1 HETATM 19 C C2' ANP . . . G 5 -22.565 -7.256 1.288 1 18.38 ? C2' ANP 406 A 1 HETATM 20 O O2' ANP . . . G 5 -22.998 -6.115 0.537 1 15.46 ? O2' ANP 406 A 1 HETATM 21 C C1' ANP . . . G 5 -23.229 -7.213 2.708 1 18.62 ? C1' ANP 406 A 1 HETATM 22 N N9 ANP . . . G 5 -22.36 -7.662 3.791 1 19.8 ? N9 ANP 406 A 1 HETATM 23 C C8 ANP . . . G 5 -22.512 -7.305 5.1 1 19.48 ? C8 ANP 406 A 1 HETATM 24 N N7 ANP . . . G 5 -21.583 -7.913 5.834 1 20.37 ? N7 ANP 406 A 1 HETATM 25 C C5 ANP . . . G 5 -20.819 -8.671 5.017 1 20.59 ? C5 ANP 406 A 1 HETATM 26 C C6 ANP . . . G 5 -19.716 -9.51 5.24 1 21.46 ? C6 ANP 406 A 1 HETATM 27 N N6 ANP . . . G 5 -19.211 -9.67 6.526 1 24.97 ? N6 ANP 406 A 1 HETATM 28 N N1 ANP . . . G 5 -19.168 -10.142 4.206 1 22 ? N1 ANP 406 A 1 HETATM 29 C C2 ANP . . . G 5 -19.685 -9.959 3.008 1 20.54 ? C2 ANP 406 A 1 HETATM 30 N N3 ANP . . . G 5 -20.712 -9.194 2.721 1 20.23 ? N3 ANP 406 A 1 HETATM 31 C C4 ANP . . . G 5 -21.305 -8.53 3.704 1 19.99 ? C4 ANP 406 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #