data_9CLY # _model_server_result.job_id 9HG3z_Qv1GQ7RAUgXJCX0Q _model_server_result.datetime_utc '2024-10-10 10:19:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 9CLY # _exptl.entry_id 9CLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9CLY _cell.length_a 111.518 _cell.length_b 111.518 _cell.length_c 102.561 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.5 -0.866 0 -0.866 0.5 0 0 0 -1 0 0 34.187 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 247 n n PA O2A NDP sing 248 n n PA O5B NDP sing 249 n n PA O3 NDP sing 250 n n O2A HOA2 NDP sing 251 n n O5B C5B NDP sing 252 n n C5B C4B NDP sing 253 n n C5B H51A NDP sing 254 n n C5B H52A NDP sing 255 n n C4B O4B NDP sing 256 n n C4B C3B NDP sing 257 n n C4B H4B NDP sing 258 n n O4B C1B NDP sing 259 n n C3B O3B NDP sing 260 n n C3B C2B NDP sing 261 n n C3B H3B NDP sing 262 n n O3B HO3A NDP sing 263 n n C2B O2B NDP sing 264 n n C2B C1B NDP sing 265 n n C2B H2B NDP sing 266 n n O2B P2B NDP sing 267 n n C1B N9A NDP sing 268 n n C1B H1B NDP sing 269 n n N9A C8A NDP sing 270 n y N9A C4A NDP sing 271 n y C8A N7A NDP doub 272 n y C8A H8A NDP sing 273 n n N7A C5A NDP sing 274 n y C5A C6A NDP sing 275 n y C5A C4A NDP doub 276 n y C6A N6A NDP sing 277 n n C6A N1A NDP doub 278 n y N6A H61A NDP sing 279 n n N6A H62A NDP sing 280 n n N1A C2A NDP sing 281 n y C2A N3A NDP doub 282 n y C2A H2A NDP sing 283 n n N3A C4A NDP sing 284 n y O3 PN NDP sing 285 n n PN O1N NDP doub 286 n n PN O2N NDP sing 287 n n PN O5D NDP sing 288 n n O2N H21N NDP sing 289 n n O5D C5D NDP sing 290 n n C5D C4D NDP sing 291 n n C5D H51N NDP sing 292 n n C5D H52N NDP sing 293 n n C4D O4D NDP sing 294 n n C4D C3D NDP sing 295 n n C4D H4D NDP sing 296 n n O4D C1D NDP sing 297 n n C3D O3D NDP sing 298 n n C3D C2D NDP sing 299 n n C3D H3D NDP sing 300 n n O3D HO3N NDP sing 301 n n C2D O2D NDP sing 302 n n C2D C1D NDP sing 303 n n C2D H2D NDP sing 304 n n O2D HO2N NDP sing 305 n n C1D N1N NDP sing 306 n n C1D H1D NDP sing 307 n n N1N C2N NDP sing 308 n n N1N C6N NDP sing 309 n n C2N C3N NDP doub 310 n n C2N H2N NDP sing 311 n n C3N C7N NDP sing 312 n n C3N C4N NDP sing 313 n n C7N O7N NDP doub 314 n n C7N N7N NDP sing 315 n n N7N H71N NDP sing 316 n n N7N H72N NDP sing 317 n n C4N C5N NDP sing 318 n n C4N H41N NDP sing 319 n n C4N H42N NDP sing 320 n n C5N C6N NDP doub 321 n n C5N H5N NDP sing 322 n n C6N H6N NDP sing 323 n n P2B O1X NDP doub 324 n n P2B O2X NDP sing 325 n n P2B O3X NDP sing 326 n n O2X HOP2 NDP sing 327 n n O3X HOP3 NDP sing 328 n n # _atom_sites.entry_id 9CLY _atom_sites.fract_transf_matrix[1][1] 0.008967 _atom_sites.fract_transf_matrix[1][2] 0.005177 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00975 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 301 301 NDP NDP . D 2 NDP B 1 301 301 NDP NDP . E 3 IMD B 1 302 302 IMD IMD . F 4 HOH A 1 401 22 HOH HOH . F 4 HOH A 2 402 126 HOH HOH . F 4 HOH A 3 403 10 HOH HOH . F 4 HOH A 4 404 18 HOH HOH . F 4 HOH A 5 405 83 HOH HOH . F 4 HOH A 6 406 148 HOH HOH . F 4 HOH A 7 407 43 HOH HOH . F 4 HOH A 8 408 66 HOH HOH . F 4 HOH A 9 409 76 HOH HOH . F 4 HOH A 10 410 20 HOH HOH . F 4 HOH A 11 411 53 HOH HOH . F 4 HOH A 12 412 124 HOH HOH . F 4 HOH A 13 413 40 HOH HOH . F 4 HOH A 14 414 24 HOH HOH . F 4 HOH A 15 415 133 HOH HOH . F 4 HOH A 16 416 54 HOH HOH . F 4 HOH A 17 417 35 HOH HOH . F 4 HOH A 18 418 111 HOH HOH . F 4 HOH A 19 419 67 HOH HOH . F 4 HOH A 20 420 27 HOH HOH . F 4 HOH A 21 421 9 HOH HOH . F 4 HOH A 22 422 110 HOH HOH . F 4 HOH A 23 423 63 HOH HOH . F 4 HOH A 24 424 73 HOH HOH . F 4 HOH A 25 425 85 HOH HOH . F 4 HOH A 26 426 1 HOH HOH . F 4 HOH A 27 427 102 HOH HOH . F 4 HOH A 28 428 8 HOH HOH . F 4 HOH A 29 429 77 HOH HOH . F 4 HOH A 30 430 17 HOH HOH . F 4 HOH A 31 431 41 HOH HOH . F 4 HOH A 32 432 39 HOH HOH . F 4 HOH A 33 433 78 HOH HOH . F 4 HOH A 34 434 99 HOH HOH . F 4 HOH A 35 435 128 HOH HOH . F 4 HOH A 36 436 71 HOH HOH . F 4 HOH A 37 437 25 HOH HOH . F 4 HOH A 38 438 137 HOH HOH . F 4 HOH A 39 439 129 HOH HOH . F 4 HOH A 40 440 11 HOH HOH . F 4 HOH A 41 441 103 HOH HOH . F 4 HOH A 42 442 138 HOH HOH . F 4 HOH A 43 443 88 HOH HOH . F 4 HOH A 44 444 70 HOH HOH . F 4 HOH A 45 445 127 HOH HOH . F 4 HOH A 46 446 152 HOH HOH . F 4 HOH A 47 447 125 HOH HOH . F 4 HOH A 48 448 96 HOH HOH . F 4 HOH A 49 449 105 HOH HOH . F 4 HOH A 50 450 95 HOH HOH . F 4 HOH A 51 451 68 HOH HOH . F 4 HOH A 52 452 97 HOH HOH . F 4 HOH A 53 453 80 HOH HOH . F 4 HOH A 54 454 79 HOH HOH . F 4 HOH A 55 455 15 HOH HOH . F 4 HOH A 56 456 81 HOH HOH . F 4 HOH A 57 457 21 HOH HOH . F 4 HOH A 58 458 31 HOH HOH . F 4 HOH A 59 459 19 HOH HOH . F 4 HOH A 60 460 32 HOH HOH . F 4 HOH A 61 461 140 HOH HOH . F 4 HOH A 62 462 115 HOH HOH . F 4 HOH A 63 463 46 HOH HOH . F 4 HOH A 64 464 2 HOH HOH . F 4 HOH A 65 465 28 HOH HOH . F 4 HOH A 66 466 38 HOH HOH . F 4 HOH A 67 467 100 HOH HOH . F 4 HOH A 68 468 30 HOH HOH . F 4 HOH A 69 469 122 HOH HOH . F 4 HOH A 70 470 142 HOH HOH . F 4 HOH A 71 471 82 HOH HOH . F 4 HOH A 72 472 116 HOH HOH . F 4 HOH A 73 473 141 HOH HOH . F 4 HOH A 74 474 158 HOH HOH . F 4 HOH A 75 475 156 HOH HOH . F 4 HOH A 76 476 89 HOH HOH . F 4 HOH A 77 477 123 HOH HOH . F 4 HOH A 78 478 120 HOH HOH . F 4 HOH A 79 479 121 HOH HOH . F 4 HOH A 80 480 37 HOH HOH . F 4 HOH A 81 481 90 HOH HOH . G 4 HOH B 1 401 23 HOH HOH . G 4 HOH B 2 402 84 HOH HOH . G 4 HOH B 3 403 62 HOH HOH . G 4 HOH B 4 404 149 HOH HOH . G 4 HOH B 5 405 45 HOH HOH . G 4 HOH B 6 406 154 HOH HOH . G 4 HOH B 7 407 7 HOH HOH . G 4 HOH B 8 408 107 HOH HOH . G 4 HOH B 9 409 104 HOH HOH . G 4 HOH B 10 410 75 HOH HOH . G 4 HOH B 11 411 49 HOH HOH . G 4 HOH B 12 412 74 HOH HOH . G 4 HOH B 13 413 3 HOH HOH . G 4 HOH B 14 414 92 HOH HOH . G 4 HOH B 15 415 36 HOH HOH . G 4 HOH B 16 416 4 HOH HOH . G 4 HOH B 17 417 6 HOH HOH . G 4 HOH B 18 418 26 HOH HOH . G 4 HOH B 19 419 160 HOH HOH . G 4 HOH B 20 420 13 HOH HOH . G 4 HOH B 21 421 134 HOH HOH . G 4 HOH B 22 422 47 HOH HOH . G 4 HOH B 23 423 101 HOH HOH . G 4 HOH B 24 424 64 HOH HOH . G 4 HOH B 25 425 69 HOH HOH . G 4 HOH B 26 426 144 HOH HOH . G 4 HOH B 27 427 34 HOH HOH . G 4 HOH B 28 428 52 HOH HOH . G 4 HOH B 29 429 114 HOH HOH . G 4 HOH B 30 430 159 HOH HOH . G 4 HOH B 31 431 42 HOH HOH . G 4 HOH B 32 432 58 HOH HOH . G 4 HOH B 33 433 48 HOH HOH . G 4 HOH B 34 434 94 HOH HOH . G 4 HOH B 35 435 135 HOH HOH . G 4 HOH B 36 436 44 HOH HOH . G 4 HOH B 37 437 108 HOH HOH . G 4 HOH B 38 438 143 HOH HOH . G 4 HOH B 39 439 12 HOH HOH . G 4 HOH B 40 440 109 HOH HOH . G 4 HOH B 41 441 61 HOH HOH . G 4 HOH B 42 442 72 HOH HOH . G 4 HOH B 43 443 60 HOH HOH . G 4 HOH B 44 444 146 HOH HOH . G 4 HOH B 45 445 51 HOH HOH . G 4 HOH B 46 446 150 HOH HOH . G 4 HOH B 47 447 98 HOH HOH . G 4 HOH B 48 448 93 HOH HOH . G 4 HOH B 49 449 55 HOH HOH . G 4 HOH B 50 450 145 HOH HOH . G 4 HOH B 51 451 57 HOH HOH . G 4 HOH B 52 452 65 HOH HOH . G 4 HOH B 53 453 16 HOH HOH . G 4 HOH B 54 454 5 HOH HOH . G 4 HOH B 55 455 33 HOH HOH . G 4 HOH B 56 456 91 HOH HOH . G 4 HOH B 57 457 87 HOH HOH . G 4 HOH B 58 458 136 HOH HOH . G 4 HOH B 59 459 59 HOH HOH . G 4 HOH B 60 460 86 HOH HOH . G 4 HOH B 61 461 130 HOH HOH . G 4 HOH B 62 462 29 HOH HOH . G 4 HOH B 63 463 14 HOH HOH . G 4 HOH B 64 464 113 HOH HOH . G 4 HOH B 65 465 151 HOH HOH . G 4 HOH B 66 466 131 HOH HOH . G 4 HOH B 67 467 112 HOH HOH . G 4 HOH B 68 468 118 HOH HOH . G 4 HOH B 69 469 119 HOH HOH . G 4 HOH B 70 470 50 HOH HOH . G 4 HOH B 71 471 157 HOH HOH . G 4 HOH B 72 472 147 HOH HOH . G 4 HOH B 73 473 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 2 57.354 -63.461 8.419 0.76 51.75 ? PA NDP 301 B 1 HETATM 2 O O1A NDP . . . D 2 56.986 -64.721 7.707 1 55.7 ? O1A NDP 301 B 1 HETATM 3 O O2A NDP . . . D 2 58.061 -62.389 7.659 0.93 44.52 ? O2A NDP 301 B 1 HETATM 4 O O5B NDP . . . D 2 58.224 -63.835 9.711 0.9 47.96 ? O5B NDP 301 B 1 HETATM 5 C C5B NDP . . . D 2 57.776 -64.931 10.544 1 48.39 ? C5B NDP 301 B 1 HETATM 6 C C4B NDP . . . D 2 58.742 -65.122 11.687 1 45.98 ? C4B NDP 301 B 1 HETATM 7 O O4B NDP . . . D 2 58.247 -66.206 12.517 0.91 46.53 ? O4B NDP 301 B 1 HETATM 8 C C3B NDP . . . D 2 60.187 -65.505 11.316 0.65 47.31 ? C3B NDP 301 B 1 HETATM 9 O O3B NDP . . . D 2 61.127 -64.804 12.125 0.95 41.6 ? O3B NDP 301 B 1 HETATM 10 C C2B NDP . . . D 2 60.21 -67.008 11.587 0.85 43.19 ? C2B NDP 301 B 1 HETATM 11 O O2B NDP . . . D 2 61.498 -67.594 11.838 0.71 48.35 ? O2B NDP 301 B 1 HETATM 12 C C1B NDP . . . D 2 59.312 -67.076 12.815 0.94 46.67 ? C1B NDP 301 B 1 HETATM 13 N N9A NDP . . . D 2 58.754 -68.401 13.055 0.97 46 ? N9A NDP 301 B 1 HETATM 14 C C8A NDP . . . D 2 57.953 -69.115 12.198 1 46.17 ? C8A NDP 301 B 1 HETATM 15 N N7A NDP . . . D 2 57.588 -70.278 12.675 1 43.61 ? N7A NDP 301 B 1 HETATM 16 C C5A NDP . . . D 2 58.184 -70.338 13.926 0.91 45.43 ? C5A NDP 301 B 1 HETATM 17 C C6A NDP . . . D 2 58.176 -71.326 14.927 0.81 47.1 ? C6A NDP 301 B 1 HETATM 18 N N6A NDP . . . D 2 57.526 -72.483 14.817 0.98 46.93 ? N6A NDP 301 B 1 HETATM 19 N N1A NDP . . . D 2 58.872 -71.068 16.061 0.91 47.15 ? N1A NDP 301 B 1 HETATM 20 C C2A NDP . . . D 2 59.523 -69.902 16.161 0.99 45.29 ? C2A NDP 301 B 1 HETATM 21 N N3A NDP . . . D 2 59.602 -68.903 15.287 1 46.17 ? N3A NDP 301 B 1 HETATM 22 C C4A NDP . . . D 2 58.902 -69.183 14.176 0.87 47.06 ? C4A NDP 301 B 1 HETATM 23 O O3 NDP . . . D 2 56.031 -62.821 9.073 0.41 50.39 ? O3 NDP 301 B 1 HETATM 24 P PN NDP . . . D 2 55.436 -61.326 9.119 0.74 48.33 ? PN NDP 301 B 1 HETATM 25 O O1N NDP . . . D 2 56.442 -60.411 9.727 0.82 44.05 ? O1N NDP 301 B 1 HETATM 26 O O2N NDP . . . D 2 54.887 -60.953 7.781 0.66 53.79 ? O2N NDP 301 B 1 HETATM 27 O O5D NDP . . . D 2 54.222 -61.528 10.139 0.39 47.19 ? O5D NDP 301 B 1 HETATM 28 C C5D NDP . . . D 2 54.449 -61.552 11.569 1 36.88 ? C5D NDP 301 B 1 HETATM 29 C C4D NDP . . . D 2 53.104 -61.707 12.224 0.76 41.45 ? C4D NDP 301 B 1 HETATM 30 O O4D NDP . . . D 2 52.213 -60.759 11.584 0.51 37.56 ? O4D NDP 301 B 1 HETATM 31 C C3D NDP . . . D 2 52.444 -63.088 12.072 0.84 41.69 ? C3D NDP 301 B 1 HETATM 32 O O3D NDP . . . D 2 52.009 -63.564 13.338 0.69 39.01 ? O3D NDP 301 B 1 HETATM 33 C C2D NDP . . . D 2 51.257 -62.786 11.157 0.87 40.52 ? C2D NDP 301 B 1 HETATM 34 O O2D NDP . . . D 2 50.154 -63.65 11.393 0.81 42.5 ? O2D NDP 301 B 1 HETATM 35 C C1D NDP . . . D 2 50.937 -61.322 11.443 0.88 36.95 ? C1D NDP 301 B 1 HETATM 36 N N1N NDP . . . D 2 50.257 -60.652 10.291 0.7 39.23 ? N1N NDP 301 B 1 HETATM 37 C C2N NDP . . . D 2 50.969 -60.216 9.203 0.83 41.96 ? C2N NDP 301 B 1 HETATM 38 C C3N NDP . . . D 2 50.374 -59.629 8.114 0.75 41.61 ? C3N NDP 301 B 1 HETATM 39 C C7N NDP . . . D 2 51.216 -59.161 6.981 0.66 46.34 ? C7N NDP 301 B 1 HETATM 40 O O7N NDP . . . D 2 50.686 -58.57 6.031 1 43.88 ? O7N NDP 301 B 1 HETATM 41 N N7N NDP . . . D 2 52.514 -59.425 7.003 0.78 48.25 ? N7N NDP 301 B 1 HETATM 42 C C4N NDP . . . D 2 48.892 -59.537 8.081 0.8 42.19 ? C4N NDP 301 B 1 HETATM 43 C C5N NDP . . . D 2 48.228 -59.948 9.322 0.72 38.95 ? C5N NDP 301 B 1 HETATM 44 C C6N NDP . . . D 2 48.897 -60.461 10.33 0.77 35.94 ? C6N NDP 301 B 1 HETATM 45 P P2B NDP . . . D 2 62.535 -67.654 10.584 0.89 50.01 ? P2B NDP 301 B 1 HETATM 46 O O1X NDP . . . D 2 61.848 -68.367 9.435 1 51.26 ? O1X NDP 301 B 1 HETATM 47 O O2X NDP . . . D 2 63.729 -68.442 11.088 0.93 56.28 ? O2X NDP 301 B 1 HETATM 48 O O3X NDP . . . D 2 62.918 -66.229 10.218 1 45.61 ? O3X NDP 301 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #