data_9CM2 # _model_server_result.job_id J7p1MbRFvlJW5Rb56Z62gw _model_server_result.datetime_utc '2024-12-26 14:07:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cm2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 9CM2 # _exptl.entry_id 9CM2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CM2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CM2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 57 Z CYS 17 1_555 D SG CYS 62 Z CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 D SG CYS 90 Z CYS 50 1_555 D SG CYS 101 Z CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 D SG CYS 95 Z CYS 55 1_555 D SG CYS 110 Z CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 112 Z CYS 72 1_555 D SG CYS 121 Z CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 D SG CYS 129 Z CYS 89 1_555 D SG CYS 140 Z CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 136 Z CYS 96 1_555 D SG CYS 149 Z CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 151 Z CYS 111 1_555 D SG CYS 164 Z CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 D SG CYS 172 Z CYS 132 1_555 D SG CYS 342 Z CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 D SG CYS 241 Z CYS 201 1_555 D SG CYS 246 Z CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 D SG CYS 261 Z CYS 221 1_555 D SG CYS 277 Z CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 D SG CYS 390 Z CYS 350 1_555 D SG CYS 404 Z CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 D SG CYS 415 Z CYS 375 1_555 D SG CYS 443 Z CYS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 D C LEU 45 Z LEU 5 1_555 D N CGU 46 Z CGU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 D C CGU 46 Z CGU 6 1_555 D N CGU 47 Z CGU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 D C CGU 47 Z CGU 7 1_555 D N MET 48 Z MET 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 D C LEU 53 Z LEU 13 1_555 D N CGU 54 Z CGU 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 D C CGU 54 Z CGU 14 1_555 D N ARG 55 Z ARG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 D C ARG 55 Z ARG 15 1_555 D N CGU 56 Z CGU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 D C CGU 56 Z CGU 16 1_555 D N CYS 57 Z CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 D C MET 58 Z MET 18 1_555 D N CGU 59 Z CGU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 D C CGU 59 Z CGU 19 1_555 D N CGU 60 Z CGU 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 D C CGU 60 Z CGU 20 1_555 D N THR 61 Z THR 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 D C TYR 64 Z TYR 24 1_555 D N CGU 65 Z CGU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 D C CGU 65 Z CGU 25 1_555 D N CGU 66 Z CGU 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale13 D C CGU 66 Z CGU 26 1_555 D N ALA 67 Z ALA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 D C ARG 68 Z ARG 28 1_555 D N CGU 69 Z CGU 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale15 D C CGU 69 Z CGU 29 1_555 D N VAL 70 Z VAL 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 D C PHE 71 Z PHE 31 1_555 D N CGU 72 Z CGU 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 D C CGU 72 Z CGU 32 1_555 D N ASP 73 Z ASP 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 D C ASN 78 Z ASN 38 1_555 D N CGU 79 Z CGU 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 D C CGU 79 Z CGU 39 1_555 D N PHE 80 Z PHE 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 D OE11 CGU 46 Z CGU 6 1_555 H CA CA . Z CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 D OE11 CGU 47 Z CGU 7 1_555 E CA CA . Z CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc3 D OE12 CGU 47 Z CGU 7 1_555 E CA CA . Z CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc4 D OE22 CGU 47 Z CGU 7 1_555 E CA CA . Z CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc5 D O ARG 55 Z ARG 15 1_555 H CA CA . Z CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc6 D OE12 CGU 56 Z CGU 16 1_555 G CA CA . Z CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc7 D OE22 CGU 56 Z CGU 16 1_555 G CA CA . Z CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc8 D O CGU 66 Z CGU 26 1_555 F CA CA . Z CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc9 D OE12 CGU 66 Z CGU 26 1_555 G CA CA . Z CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc10 D OE12 CGU 69 Z CGU 29 1_555 E CA CA . Z CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc11 D OE22 CGU 69 Z CGU 29 1_555 E CA CA . Z CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc12 D OE21 CGU 69 Z CGU 29 1_555 F CA CA . Z CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc13 D OE21 CGU 69 Z CGU 29 1_555 G CA CA . Z CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9CM2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA Z 1 501 504 CA CA . F 3 CA Z 1 502 505 CA CA . G 3 CA Z 1 503 506 CA CA . H 3 CA Z 1 504 507 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.683 _atom_site.Cartn_y -8.941 _atom_site.Cartn_z -17.348 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 503 _atom_site.auth_asym_id Z _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 448 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #