data_9CMT # _model_server_result.job_id 7HewqOIG0gtiuvHlt_NSdw _model_server_result.datetime_utc '2025-07-26 18:53:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 9CMT # _exptl.entry_id 9CMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 376.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-5-CARBOXYLIC ACID" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CMT _cell.length_a 112.961 _cell.length_b 112.961 _cell.length_c 154.687 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N ARG 1 C ARG 2 1_555 G C25 F6Z . C F6Z 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 F N ARG 1 F ARG 2 1_555 H C25 F6Z . F F6Z 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C21 H12 O7' _chem_comp.formula_weight 376.316 _chem_comp.id F6Z _chem_comp.mon_nstd_flag . _chem_comp.name "3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-5-CARBOXYLIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 F6Z doub 83 n n C1 C2 F6Z sing 84 n n C1 O2 F6Z sing 85 n n C2 C3 F6Z sing 86 n y C2 C19 F6Z doub 87 n y C3 C4 F6Z doub 88 n y C4 C21 F6Z sing 89 n y C4 C25 F6Z sing 90 n n O2 C5 F6Z sing 91 n n C5 C6 F6Z sing 92 n n C5 C18 F6Z sing 93 n n C5 C19 F6Z sing 94 n n C6 C7 F6Z sing 95 n y C6 C12 F6Z doub 96 n y C7 C8 F6Z doub 97 n y C8 C9 F6Z sing 98 n y C9 O3 F6Z sing 99 n n C9 C11 F6Z doub 100 n y C11 C12 F6Z sing 101 n y C12 O4 F6Z sing 102 n n O4 C13 F6Z sing 103 n n C13 C14 F6Z doub 104 n y C13 C18 F6Z sing 105 n y C14 C15 F6Z sing 106 n y C15 O5 F6Z sing 107 n n C15 C16 F6Z doub 108 n y C16 C17 F6Z sing 109 n y C17 C18 F6Z doub 110 n y C19 C20 F6Z sing 111 n y C20 C21 F6Z doub 112 n y O6 C25 F6Z doub 113 n n C25 O7 F6Z sing 114 n n C3 H3 F6Z sing 115 n n C21 H21 F6Z sing 116 n n C7 H7 F6Z sing 117 n n C8 H8 F6Z sing 118 n n O3 HA F6Z sing 119 n n C11 H11 F6Z sing 120 n n C14 H14 F6Z sing 121 n n O5 H5 F6Z sing 122 n n C16 H16 F6Z sing 123 n n C17 H17 F6Z sing 124 n n C20 H20 F6Z sing 125 n n O7 H71 F6Z sing 126 n n # _atom_sites.entry_id 9CMT _atom_sites.fract_transf_matrix[1][1] 0.008853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 F6Z C 1 101 101 F6Z F6Z . H 3 F6Z F 1 101 101 F6Z F6Z . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 F6Z . . . G 3 15.949 56.423 19.197 1 93.71 ? O1 F6Z 101 C 1 HETATM 2 C C1 F6Z . . . G 3 16.507 55.36 19.416 1 102.46 ? C1 F6Z 101 C 1 HETATM 3 C C2 F6Z . . . G 3 16.082 53.942 19.503 1 104.1 ? C2 F6Z 101 C 1 HETATM 4 C C3 F6Z . . . G 3 14.858 53.386 19.835 1 104.3 ? C3 F6Z 101 C 1 HETATM 5 C C4 F6Z . . . G 3 14.743 52.001 19.856 1 103.12 ? C4 F6Z 101 C 1 HETATM 6 O O2 F6Z . . . G 3 17.838 55.245 19.588 1 110.07 ? O2 F6Z 101 C 1 HETATM 7 C C5 F6Z . . . G 3 18.359 54.062 18.84 1 106.17 ? C5 F6Z 101 C 1 HETATM 8 C C6 F6Z . . . G 3 19.645 53.616 19.524 1 103.77 ? C6 F6Z 101 C 1 HETATM 9 C C7 F6Z . . . G 3 19.64 52.852 20.699 1 104.69 ? C7 F6Z 101 C 1 HETATM 10 C C8 F6Z . . . G 3 20.794 52.469 21.34 1 103.71 ? C8 F6Z 101 C 1 HETATM 11 C C9 F6Z . . . G 3 22.024 52.888 20.84 1 98.89 ? C9 F6Z 101 C 1 HETATM 12 O O3 F6Z . . . G 3 23.12 52.503 21.51 1 104.66 ? O3 F6Z 101 C 1 HETATM 13 C C11 F6Z . . . G 3 22.062 53.668 19.704 1 96.4 ? C11 F6Z 101 C 1 HETATM 14 C C12 F6Z . . . G 3 20.882 54.021 19.059 1 98.28 ? C12 F6Z 101 C 1 HETATM 15 O O4 F6Z . . . G 3 21.014 54.791 17.957 1 95.76 ? O4 F6Z 101 C 1 HETATM 16 C C13 F6Z . . . G 3 19.943 55.104 17.2 1 96.26 ? C13 F6Z 101 C 1 HETATM 17 C C14 F6Z . . . G 3 20.245 55.811 16.054 1 99.3 ? C14 F6Z 101 C 1 HETATM 18 C C15 F6Z . . . G 3 19.25 56.212 15.192 1 97.3 ? C15 F6Z 101 C 1 HETATM 19 O O5 F6Z . . . G 3 19.517 56.896 14.074 1 108.58 ? O5 F6Z 101 C 1 HETATM 20 C C16 F6Z . . . G 3 17.928 55.897 15.476 1 96.59 ? C16 F6Z 101 C 1 HETATM 21 C C17 F6Z . . . G 3 17.664 55.179 16.613 1 99.83 ? C17 F6Z 101 C 1 HETATM 22 C C18 F6Z . . . G 3 18.651 54.732 17.504 1 99.84 ? C18 F6Z 101 C 1 HETATM 23 C C19 F6Z . . . G 3 17.172 53.142 19.126 1 102.36 ? C19 F6Z 101 C 1 HETATM 24 C C20 F6Z . . . G 3 17.073 51.761 19.154 1 97.22 ? C20 F6Z 101 C 1 HETATM 25 C C21 F6Z . . . G 3 15.854 51.211 19.508 1 99.77 ? C21 F6Z 101 C 1 HETATM 26 O O6 F6Z . . . G 3 13.468 50.127 20.451 1 107.66 ? O6 F6Z 101 C 1 HETATM 27 C C25 F6Z . . . G 3 13.409 51.355 20.233 1 102.82 ? C25 F6Z 101 C 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #