data_9CMT
#
_model_server_result.job_id            Zlmc5Zm--N27bTdFOD9eIg 
_model_server_result.datetime_utc      '2025-07-27 04:42:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cmt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":101}' 
#
_entry.id    9CMT 
#
_exptl.entry_id    9CMT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.316 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-5-CARBOXYLIC ACID" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CMT 
_cell.length_a            112.961 
_cell.length_b            112.961 
_cell.length_c            154.687 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CMT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C N ARG 1 C ARG 2 1_555 G C25 F6Z . C F6Z 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale2 F N ARG 1 F ARG 2 1_555 H C25 F6Z . F F6Z 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
#
_chem_comp.formula           'C21 H12 O7' 
_chem_comp.formula_weight    376.316 
_chem_comp.id                F6Z 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3',6'-DIHYDROXY-3-OXO-3H-SPIRO[2-BENZOFURAN-1,9'-XANTHENE]-5-CARBOXYLIC ACID" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 F6Z doub 83 n n 
C1 C2 F6Z sing 84 n n 
C1 O2 F6Z sing 85 n n 
C2 C3 F6Z sing 86 n y 
C2 C19 F6Z doub 87 n y 
C3 C4 F6Z doub 88 n y 
C4 C21 F6Z sing 89 n y 
C4 C25 F6Z sing 90 n n 
O2 C5 F6Z sing 91 n n 
C5 C6 F6Z sing 92 n n 
C5 C18 F6Z sing 93 n n 
C5 C19 F6Z sing 94 n n 
C6 C7 F6Z sing 95 n y 
C6 C12 F6Z doub 96 n y 
C7 C8 F6Z doub 97 n y 
C8 C9 F6Z sing 98 n y 
C9 O3 F6Z sing 99 n n 
C9 C11 F6Z doub 100 n y 
C11 C12 F6Z sing 101 n y 
C12 O4 F6Z sing 102 n n 
O4 C13 F6Z sing 103 n n 
C13 C14 F6Z doub 104 n y 
C13 C18 F6Z sing 105 n y 
C14 C15 F6Z sing 106 n y 
C15 O5 F6Z sing 107 n n 
C15 C16 F6Z doub 108 n y 
C16 C17 F6Z sing 109 n y 
C17 C18 F6Z doub 110 n y 
C19 C20 F6Z sing 111 n y 
C20 C21 F6Z doub 112 n y 
O6 C25 F6Z doub 113 n n 
C25 O7 F6Z sing 114 n n 
C3 H3 F6Z sing 115 n n 
C21 H21 F6Z sing 116 n n 
C7 H7 F6Z sing 117 n n 
C8 H8 F6Z sing 118 n n 
O3 HA F6Z sing 119 n n 
C11 H11 F6Z sing 120 n n 
C14 H14 F6Z sing 121 n n 
O5 H5 F6Z sing 122 n n 
C16 H16 F6Z sing 123 n n 
C17 H17 F6Z sing 124 n n 
C20 H20 F6Z sing 125 n n 
O7 H71 F6Z sing 126 n n 
#
_atom_sites.entry_id                     9CMT 
_atom_sites.fract_transf_matrix[1][1]    0.008853 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008853 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006465 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 F6Z C 1 101 101 F6Z F6Z . 
H 3 F6Z F 1 101 101 F6Z F6Z . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 F6Z . . . H 3 15.241 39.478 1.992 1 87.61 ? O1 F6Z 101 F 1 
HETATM 2 C C1 F6Z . . . H 3 15.403 38.634 2.833 1 98.11 ? C1 F6Z 101 F 1 
HETATM 3 C C2 F6Z . . . H 3 15.906 38.763 4.186 1 99.34 ? C2 F6Z 101 F 1 
HETATM 4 C C3 F6Z . . . H 3 16.629 39.828 4.687 1 97.3 ? C3 F6Z 101 F 1 
HETATM 5 C C4 F6Z . . . H 3 17.056 39.759 5.973 1 92.36 ? C4 F6Z 101 F 1 
HETATM 6 O O2 F6Z . . . H 3 15.184 37.305 2.689 1 104.08 ? O2 F6Z 101 F 1 
HETATM 7 C C5 F6Z . . . H 3 14.76 36.675 3.959 1 97.94 ? C5 F6Z 101 F 1 
HETATM 8 C C6 F6Z . . . H 3 15.102 35.179 3.951 1 93.24 ? C6 F6Z 101 F 1 
HETATM 9 C C7 F6Z . . . H 3 16.415 34.714 4.08 1 92.5 ? C7 F6Z 101 F 1 
HETATM 10 C C8 F6Z . . . H 3 16.74 33.371 4.064 1 88.92 ? C8 F6Z 101 F 1 
HETATM 11 C C9 F6Z . . . H 3 15.734 32.419 3.897 1 88.5 ? C9 F6Z 101 F 1 
HETATM 12 O O3 F6Z . . . H 3 16.145 31.141 3.892 1 83.47 ? O3 F6Z 101 F 1 
HETATM 13 C C11 F6Z . . . H 3 14.416 32.822 3.768 1 84.83 ? C11 F6Z 101 F 1 
HETATM 14 C C12 F6Z . . . H 3 14.131 34.184 3.798 1 88.63 ? C12 F6Z 101 F 1 
HETATM 15 O O4 F6Z . . . H 3 12.819 34.466 3.678 1 91.95 ? O4 F6Z 101 F 1 
HETATM 16 C C13 F6Z . . . H 3 12.379 35.744 3.781 1 94.06 ? C13 F6Z 101 F 1 
HETATM 17 C C14 F6Z . . . H 3 10.996 35.889 3.717 1 93.24 ? C14 F6Z 101 F 1 
HETATM 18 C C15 F6Z . . . H 3 10.451 37.159 3.774 1 96.6 ? C15 F6Z 101 F 1 
HETATM 19 O O5 F6Z . . . H 3 9.139 37.415 3.705 1 101.95 ? O5 F6Z 101 F 1 
HETATM 20 C C16 F6Z . . . H 3 11.279 38.264 3.912 1 97.84 ? C16 F6Z 101 F 1 
HETATM 21 C C17 F6Z . . . H 3 12.633 38.083 3.984 1 96.18 ? C17 F6Z 101 F 1 
HETATM 22 C C18 F6Z . . . H 3 13.24 36.828 3.931 1 94.97 ? C18 F6Z 101 F 1 
HETATM 23 C C19 F6Z . . . H 3 15.565 37.608 4.886 1 96.4 ? C19 F6Z 101 F 1 
HETATM 24 C C20 F6Z . . . H 3 16.002 37.525 6.197 1 97.45 ? C20 F6Z 101 F 1 
HETATM 25 C C21 F6Z . . . H 3 16.736 38.607 6.704 1 97.19 ? C21 F6Z 101 F 1 
HETATM 26 O O6 F6Z . . . H 3 18.4 40.688 7.614 1 98.89 ? O6 F6Z 101 F 1 
HETATM 27 C C25 F6Z . . . H 3 17.854 40.923 6.535 1 98.38 ? C25 F6Z 101 F 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#