data_9CMV # _model_server_result.job_id FLhwKMFs84eHre5hx1vX5g _model_server_result.datetime_utc '2025-07-27 15:48:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 9CMV # _exptl.entry_id 9CMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CMV _cell.length_a 58.478 _cell.length_b 127.34 _cell.length_c 190.798 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 18 B SER 17 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc2 B OG1 THR 36 B THR 35 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc3 G O1G GNP . B GNP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 G O2B GNP . B GNP 501 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 205 n n PG O2G GNP sing 206 n n PG O3G GNP sing 207 n n PG N3B GNP sing 208 n n O2G HOG2 GNP sing 209 n n O3G HOG3 GNP sing 210 n n N3B PB GNP sing 211 n n N3B HNB3 GNP sing 212 n n PB O1B GNP doub 213 n n PB O2B GNP sing 214 n n PB O3A GNP sing 215 n n O2B HOB2 GNP sing 216 n n O3A PA GNP sing 217 n n PA O1A GNP doub 218 n n PA O2A GNP sing 219 n n PA O5' GNP sing 220 n n O2A HOA2 GNP sing 221 n n O5' C5' GNP sing 222 n n C5' C4' GNP sing 223 n n C5' "H5'2" GNP sing 224 n n C5' "H5'1" GNP sing 225 n n C4' O4' GNP sing 226 n n C4' C3' GNP sing 227 n n C4' H4' GNP sing 228 n n O4' C1' GNP sing 229 n n C3' O3' GNP sing 230 n n C3' C2' GNP sing 231 n n C3' H3' GNP sing 232 n n O3' HO3' GNP sing 233 n n C2' O2' GNP sing 234 n n C2' C1' GNP sing 235 n n C2' H2' GNP sing 236 n n O2' HO2' GNP sing 237 n n C1' N9 GNP sing 238 n n C1' H1' GNP sing 239 n n N9 C8 GNP sing 240 n y N9 C4 GNP sing 241 n y C8 N7 GNP doub 242 n y C8 H8 GNP sing 243 n n N7 C5 GNP sing 244 n y C5 C6 GNP sing 245 n y C5 C4 GNP doub 246 n y C6 O6 GNP doub 247 n n C6 N1 GNP sing 248 n y N1 C2 GNP sing 249 n y N1 HN1 GNP sing 250 n n C2 N2 GNP sing 251 n n C2 N3 GNP doub 252 n y N2 HN21 GNP sing 253 n n N2 HN22 GNP sing 254 n n N3 C4 GNP sing 255 n y # _atom_sites.entry_id 9CMV _atom_sites.fract_transf_matrix[1][1] 0.0171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1AZD A 1 1101 1101 A1AZD D22 . D 4 GOL A 1 1102 1 GOL GOL . E 4 GOL A 1 1103 2 GOL GOL . F 5 MG A 1 1104 2 MG MG . G 6 GNP B 1 501 501 GNP GNP . H 5 MG B 1 502 1 MG MG . I 7 HOH A 1 1201 4 HOH HOH . I 7 HOH A 2 1202 5 HOH HOH . I 7 HOH A 3 1203 6 HOH HOH . I 7 HOH A 4 1204 2 HOH HOH . I 7 HOH A 5 1205 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . G 6 -14.514 8.652 -6.614 1 110.59 ? PG GNP 501 B 1 HETATM 2 O O1G GNP . . . G 6 -13.348 8.633 -5.621 1 112.74 ? O1G GNP 501 B 1 HETATM 3 O O2G GNP . . . G 6 -14.606 7.42 -7.514 1 116.97 ? O2G GNP 501 B 1 HETATM 4 O O3G GNP . . . G 6 -15.853 9.076 -6.002 1 114.77 ? O3G GNP 501 B 1 HETATM 5 N N3B GNP . . . G 6 -14.014 9.991 -7.707 1 116.33 ? N3B GNP 501 B 1 HETATM 6 P PB GNP . . . G 6 -14.399 11.598 -7.409 1 112.42 ? PB GNP 501 B 1 HETATM 7 O O1B GNP . . . G 6 -15.629 12.059 -8.147 1 112.23 ? O1B GNP 501 B 1 HETATM 8 O O2B GNP . . . G 6 -14.248 11.9 -5.943 1 112.19 ? O2B GNP 501 B 1 HETATM 9 O O3A GNP . . . G 6 -13.15 12.387 -8.224 1 114.99 ? O3A GNP 501 B 1 HETATM 10 P PA GNP . . . G 6 -11.829 13.065 -7.561 1 112.2 ? PA GNP 501 B 1 HETATM 11 O O1A GNP . . . G 6 -12.176 14.34 -6.86 1 110.9 ? O1A GNP 501 B 1 HETATM 12 O O2A GNP . . . G 6 -10.949 12.03 -6.927 1 113.56 ? O2A GNP 501 B 1 HETATM 13 O O5' GNP . . . G 6 -11.132 13.58 -8.976 1 121.86 ? O5' GNP 501 B 1 HETATM 14 C C5' GNP . . . G 6 -10.76 12.662 -9.97 1 121.64 ? C5' GNP 501 B 1 HETATM 15 C C4' GNP . . . G 6 -9.899 13.33 -11.024 1 119.24 ? C4' GNP 501 B 1 HETATM 16 O O4' GNP . . . G 6 -10.564 14.468 -11.586 1 115.5 ? O4' GNP 501 B 1 HETATM 17 C C3' GNP . . . G 6 -8.533 13.824 -10.537 1 118.04 ? C3' GNP 501 B 1 HETATM 18 O O3' GNP . . . G 6 -7.592 13.552 -11.548 1 119.86 ? O3' GNP 501 B 1 HETATM 19 C C2' GNP . . . G 6 -8.757 15.325 -10.377 1 117.94 ? C2' GNP 501 B 1 HETATM 20 O O2' GNP . . . G 6 -7.563 16.041 -10.482 1 119.81 ? O2' GNP 501 B 1 HETATM 21 C C1' GNP . . . G 6 -9.745 15.595 -11.518 1 116.62 ? C1' GNP 501 B 1 HETATM 22 N N9 GNP . . . G 6 -10.558 16.768 -11.308 1 116.95 ? N9 GNP 501 B 1 HETATM 23 C C8 GNP . . . G 6 -11.458 16.985 -10.293 1 116.57 ? C8 GNP 501 B 1 HETATM 24 N N7 GNP . . . G 6 -12.038 18.143 -10.375 1 116.5 ? N7 GNP 501 B 1 HETATM 25 C C5 GNP . . . G 6 -11.5 18.725 -11.494 1 118.79 ? C5 GNP 501 B 1 HETATM 26 C C6 GNP . . . G 6 -11.747 19.996 -12.09 1 123.16 ? C6 GNP 501 B 1 HETATM 27 O O6 GNP . . . G 6 -12.511 20.875 -11.731 1 124.7 ? O6 GNP 501 B 1 HETATM 28 N N1 GNP . . . G 6 -10.957 20.163 -13.237 1 126.92 ? N1 GNP 501 B 1 HETATM 29 C C2 GNP . . . G 6 -10.068 19.258 -13.742 1 124.67 ? C2 GNP 501 B 1 HETATM 30 N N2 GNP . . . G 6 -9.402 19.603 -14.855 1 124.93 ? N2 GNP 501 B 1 HETATM 31 N N3 GNP . . . G 6 -9.846 18.093 -13.19 1 121.31 ? N3 GNP 501 B 1 HETATM 32 C C4 GNP . . . G 6 -10.577 17.884 -12.085 1 119.16 ? C4 GNP 501 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #