data_9CMZ
#
_model_server_result.job_id            WvEXzMvDSWeEA2SPxzFMvQ 
_model_server_result.datetime_utc      '2024-10-10 10:24:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cmz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":402}' 
#
_entry.id    9CMZ 
#
_exptl.entry_id    9CMZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              502.459 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4-{[5-chloro-4-(5-chlorothiophen-2-yl)pyrimidin-2-yl]amino}phenyl)[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.78 
_cell.angle_gamma         90 
_cell.entry_id            9CMZ 
_cell.length_a            77.539 
_cell.length_b            99.428 
_cell.length_c            78.148 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CMZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,N,O 1 1 
C,L,M,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 K N N 
? 4 M N N 
#
_chem_comp.formula           'C24 H25 Cl2 N5 O S' 
_chem_comp.formula_weight    502.459 
_chem_comp.id                A1AZE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4-{[5-chloro-4-(5-chlorothiophen-2-yl)pyrimidin-2-yl]amino}phenyl)[4-(pyrrolidin-1-yl)piperidin-1-yl]methanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C33 C32 A1AZE sing 1 n n 
C33 N29 A1AZE sing 2 n n 
C32 C31 A1AZE sing 3 n n 
CL20 C11 A1AZE sing 4 n n 
C14 C15 A1AZE sing 5 n y 
C14 C13 A1AZE doub 6 n y 
C15 C16 A1AZE doub 7 n y 
C11 C10 A1AZE doub 8 n y 
C11 C12 A1AZE sing 9 n y 
C10 N09 A1AZE sing 10 n y 
N29 C30 A1AZE sing 11 n n 
N29 C26 A1AZE sing 12 n n 
C13 C12 A1AZE sing 13 n n 
C13 S17 A1AZE sing 14 n y 
C16 CL18 A1AZE sing 15 n n 
C16 S17 A1AZE sing 16 n y 
C12 N19 A1AZE doub 17 n y 
C31 C30 A1AZE sing 18 n n 
N09 C08 A1AZE doub 19 n y 
C27 C26 A1AZE sing 20 n n 
C27 C28 A1AZE sing 21 n n 
N19 C08 A1AZE sing 22 n y 
C08 N07 A1AZE sing 23 n n 
C26 C25 A1AZE sing 24 n n 
N07 C06 A1AZE sing 25 n n 
C28 N23 A1AZE sing 26 n n 
C06 C05 A1AZE doub 27 n y 
C06 C21 A1AZE sing 28 n y 
C05 C04 A1AZE sing 29 n y 
C21 C22 A1AZE doub 30 n y 
C04 C03 A1AZE doub 31 n y 
C25 C24 A1AZE sing 32 n n 
C22 C03 A1AZE sing 33 n y 
N23 C24 A1AZE sing 34 n n 
N23 C02 A1AZE sing 35 n n 
C03 C02 A1AZE sing 36 n n 
C02 O01 A1AZE doub 37 n n 
C10 H1 A1AZE sing 38 n n 
C14 H2 A1AZE sing 39 n n 
C15 H3 A1AZE sing 40 n n 
C04 H4 A1AZE sing 41 n n 
C05 H5 A1AZE sing 42 n n 
C21 H6 A1AZE sing 43 n n 
C22 H7 A1AZE sing 44 n n 
C24 H8 A1AZE sing 45 n n 
C24 H9 A1AZE sing 46 n n 
C25 H10 A1AZE sing 47 n n 
C25 H11 A1AZE sing 48 n n 
C26 H12 A1AZE sing 49 n n 
C27 H13 A1AZE sing 50 n n 
C27 H14 A1AZE sing 51 n n 
C28 H15 A1AZE sing 52 n n 
C28 H16 A1AZE sing 53 n n 
C30 H17 A1AZE sing 54 n n 
C30 H18 A1AZE sing 55 n n 
C31 H19 A1AZE sing 56 n n 
C31 H20 A1AZE sing 57 n n 
C32 H21 A1AZE sing 58 n n 
C32 H22 A1AZE sing 59 n n 
C33 H23 A1AZE sing 60 n n 
C33 H24 A1AZE sing 61 n n 
N07 H25 A1AZE sing 62 n n 
#
_atom_sites.entry_id                     9CMZ 
_atom_sites.fract_transf_matrix[1][1]    0.012897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002456 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010057 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013026 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 CL A 1 401 4 CL CL . 
E 2 CL A 1 402 6 CL CL . 
F 2 CL A 1 403 7 CL CL . 
G 3 SO4 A 1 404 2 SO4 SO4 . 
H 4 A1AZE A 1 405 301 A1AZE K51 . 
I 2 CL B 1 401 5 CL CL . 
J 3 SO4 B 1 402 1 SO4 SO4 . 
K 4 A1AZE B 1 403 302 A1AZE K51 . 
L 3 SO4 C 1 401 3 SO4 SO4 . 
M 4 A1AZE C 1 402 303 A1AZE K51 . 
N 5 HOH A 1 501 6 HOH HOH . 
N 5 HOH A 2 502 26 HOH HOH . 
N 5 HOH A 3 503 14 HOH HOH . 
N 5 HOH A 4 504 12 HOH HOH . 
N 5 HOH A 5 505 16 HOH HOH . 
N 5 HOH A 6 506 5 HOH HOH . 
N 5 HOH A 7 507 11 HOH HOH . 
N 5 HOH A 8 508 23 HOH HOH . 
N 5 HOH A 9 509 24 HOH HOH . 
N 5 HOH A 10 510 13 HOH HOH . 
O 5 HOH B 1 501 22 HOH HOH . 
O 5 HOH B 2 502 9 HOH HOH . 
O 5 HOH B 3 503 15 HOH HOH . 
O 5 HOH B 4 504 3 HOH HOH . 
O 5 HOH B 5 505 4 HOH HOH . 
O 5 HOH B 6 506 19 HOH HOH . 
O 5 HOH B 7 507 8 HOH HOH . 
O 5 HOH B 8 508 2 HOH HOH . 
O 5 HOH B 9 509 17 HOH HOH . 
O 5 HOH B 10 510 1 HOH HOH . 
O 5 HOH B 11 511 10 HOH HOH . 
P 5 HOH C 1 501 25 HOH HOH . 
P 5 HOH C 2 502 18 HOH HOH . 
P 5 HOH C 3 503 7 HOH HOH . 
P 5 HOH C 4 504 21 HOH HOH . 
P 5 HOH C 5 505 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 A1AZE . . . M 4 47.774 7.309 -7.76 1 72.98 ? C13 A1AZE 402 C 1 
HETATM 2 C C10 A1AZE . . . M 4 46.571 7.006 -11.477 1 64.87 ? C10 A1AZE 402 C 1 
HETATM 3 C C11 A1AZE . . . M 4 47.426 6.899 -10.381 1 65.73 ? C11 A1AZE 402 C 1 
HETATM 4 C C12 A1AZE . . . M 4 46.962 7.339 -9.091 1 68.7 ? C12 A1AZE 402 C 1 
HETATM 5 C C14 A1AZE . . . M 4 48.971 6.813 -7.314 1 58.55 ? C14 A1AZE 402 C 1 
HETATM 6 C C15 A1AZE . . . M 4 49.301 7.08 -5.873 1 64.38 ? C15 A1AZE 402 C 1 
HETATM 7 C C16 A1AZE . . . M 4 48.32 7.778 -5.277 1 70.17 ? C16 A1AZE 402 C 1 
HETATM 8 C C02 A1AZE . . . M 4 39.866 9.508 -5.539 1 65.75 ? C02 A1AZE 402 C 1 
HETATM 9 C C03 A1AZE . . . M 4 40.89 9.197 -6.651 1 68.43 ? C03 A1AZE 402 C 1 
HETATM 10 C C04 A1AZE . . . M 4 40.64 9.658 -7.966 1 70.25 ? C04 A1AZE 402 C 1 
HETATM 11 C C05 A1AZE . . . M 4 41.511 9.423 -9.044 1 67.24 ? C05 A1AZE 402 C 1 
HETATM 12 C C06 A1AZE . . . M 4 42.722 8.702 -8.851 1 64.68 ? C06 A1AZE 402 C 1 
HETATM 13 C C08 A1AZE . . . M 4 44.864 7.965 -10.116 1 61.43 ? C08 A1AZE 402 C 1 
HETATM 14 C C21 A1AZE . . . M 4 43.023 8.217 -7.52 1 65.08 ? C21 A1AZE 402 C 1 
HETATM 15 C C22 A1AZE . . . M 4 42.102 8.479 -6.441 1 63.53 ? C22 A1AZE 402 C 1 
HETATM 16 C C24 A1AZE . . . M 4 39.059 10.907 -3.434 1 61.15 ? C24 A1AZE 402 C 1 
HETATM 17 C C25 A1AZE . . . M 4 38.694 12.458 -3.303 1 70.47 ? C25 A1AZE 402 C 1 
HETATM 18 C C26 A1AZE . . . M 4 39.986 13.375 -3.437 1 77.13 ? C26 A1AZE 402 C 1 
HETATM 19 C C27 A1AZE . . . M 4 40.972 12.925 -4.525 1 78.12 ? C27 A1AZE 402 C 1 
HETATM 20 C C28 A1AZE . . . M 4 41.264 11.372 -4.43 1 72.51 ? C28 A1AZE 402 C 1 
HETATM 21 C C30 A1AZE . . . M 4 38.59 15.432 -2.538 1 82.08 ? C30 A1AZE 402 C 1 
HETATM 22 C C31 A1AZE . . . M 4 39.777 15.981 -1.709 1 82.04 ? C31 A1AZE 402 C 1 
HETATM 23 C C32 A1AZE . . . M 4 40.887 16.171 -2.734 1 90.05 ? C32 A1AZE 402 C 1 
HETATM 24 C C33 A1AZE . . . M 4 40.38 15.762 -4.143 1 87.1 ? C33 A1AZE 402 C 1 
HETATM 25 N N07 A1AZE . . . M 4 43.558 8.501 -10.046 1 65.6 ? N07 A1AZE 402 C 1 
HETATM 26 N N09 A1AZE . . . M 4 45.328 7.531 -11.353 1 67.55 ? N09 A1AZE 402 C 1 
HETATM 27 N N19 A1AZE . . . M 4 45.711 7.866 -9.005 1 67.98 ? N19 A1AZE 402 C 1 
HETATM 28 N N23 A1AZE . . . M 4 40.037 10.548 -4.509 1 68.31 ? N23 A1AZE 402 C 1 
HETATM 29 N N29 A1AZE . . . M 4 39.288 14.77 -3.717 1 77.43 ? N29 A1AZE 402 C 1 
HETATM 30 O O01 A1AZE . . . M 4 38.819 8.891 -5.548 1 70.04 ? O01 A1AZE 402 C 1 
HETATM 31 S S17 A1AZE . . . M 4 46.991 8.124 -6.371 1 59.51 ? S17 A1AZE 402 C 1 
HETATM 32 CL CL18 A1AZE . . . M 4 48.099 8.415 -3.585 1 85.21 ? CL18 A1AZE 402 C 1 
HETATM 33 CL CL20 A1AZE . . . M 4 49.038 6.227 -10.611 1 79 ? CL20 A1AZE 402 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#