data_9COS
#
_model_server_result.job_id            mCqA4FkZv3uX42GjL_wtCQ 
_model_server_result.datetime_utc      '2025-07-31 04:14:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cos 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    9COS 
#
_exptl.entry_id    9COS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              586.668 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-3-phenyl-2-{[(2S)-3-phenyl-2-{[N-(trifluoroacetyl)glycyl]amino}propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9COS 
_cell.length_a            76.19 
_cell.length_b            100.16 
_cell.length_c            124.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9COS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C 1 1 
A,B,C 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.16 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N33 A1A06 . A A1A06 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
#
_chem_comp.formula           'C30 H33 F3 N4 O3 S' 
_chem_comp.formula_weight    586.668 
_chem_comp.id                A1A06 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-3-phenyl-2-{[(2S)-3-phenyl-2-{[N-(trifluoroacetyl)glycyl]amino}propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F04 C02 A1A06 sing 1 n n 
C40 C39 A1A06 doub 2 n y 
C40 C41 A1A06 sing 3 n y 
C39 C38 A1A06 sing 4 n y 
C08 N07 A1A06 sing 5 n n 
C08 C09 A1A06 sing 6 n n 
C02 F01 A1A06 sing 7 n n 
C02 C05 A1A06 sing 8 n n 
C02 F03 A1A06 sing 9 n n 
C41 C36 A1A06 doub 10 n y 
N07 C05 A1A06 sing 11 n n 
C05 O06 A1A06 doub 12 n n 
C32 C31 A1A06 doub 13 n y 
C32 N33 A1A06 sing 14 n y 
C31 C30 A1A06 sing 15 n y 
C09 O10 A1A06 doub 16 n n 
C09 N11 A1A06 sing 17 n n 
C38 C37 A1A06 doub 18 n y 
C36 C37 A1A06 sing 19 n y 
C36 C35 A1A06 sing 20 n n 
N33 C34 A1A06 doub 21 n y 
N11 C12 A1A06 sing 22 n n 
C30 C29 A1A06 doub 23 n y 
C35 C12 A1A06 sing 24 n n 
C12 C13 A1A06 sing 25 n n 
C34 C29 A1A06 sing 26 n y 
C29 C28 A1A06 sing 27 n n 
N25 C26 A1A06 sing 28 n n 
N25 C23 A1A06 sing 29 n n 
C13 S14 A1A06 sing 30 n n 
C26 C27 A1A06 sing 31 n n 
C28 C27 A1A06 sing 32 n n 
C15 S14 A1A06 sing 33 n n 
C15 C23 A1A06 sing 34 n n 
C15 C16 A1A06 sing 35 n n 
C23 O24 A1A06 doub 36 n n 
C18 C19 A1A06 doub 37 n y 
C18 C17 A1A06 sing 38 n y 
C19 C20 A1A06 sing 39 n y 
C16 C17 A1A06 sing 40 n n 
C17 C22 A1A06 doub 41 n y 
C20 C21 A1A06 doub 42 n y 
C22 C21 A1A06 sing 43 n y 
C08 H1 A1A06 sing 44 n n 
C08 H2 A1A06 sing 45 n n 
C12 H3 A1A06 sing 46 n n 
C13 H4 A1A06 sing 47 n n 
C13 H5 A1A06 sing 48 n n 
C15 H6 A1A06 sing 49 n n 
C16 H7 A1A06 sing 50 n n 
C16 H8 A1A06 sing 51 n n 
C18 H9 A1A06 sing 52 n n 
C19 H10 A1A06 sing 53 n n 
C20 H11 A1A06 sing 54 n n 
C21 H12 A1A06 sing 55 n n 
C22 H13 A1A06 sing 56 n n 
C26 H14 A1A06 sing 57 n n 
C26 H15 A1A06 sing 58 n n 
C27 H16 A1A06 sing 59 n n 
C27 H17 A1A06 sing 60 n n 
C28 H18 A1A06 sing 61 n n 
C28 H19 A1A06 sing 62 n n 
C30 H20 A1A06 sing 63 n n 
C31 H21 A1A06 sing 64 n n 
C32 H22 A1A06 sing 65 n n 
C34 H23 A1A06 sing 66 n n 
C35 H24 A1A06 sing 67 n n 
C35 H25 A1A06 sing 68 n n 
C37 H26 A1A06 sing 69 n n 
C38 H27 A1A06 sing 70 n n 
C39 H28 A1A06 sing 71 n n 
C40 H29 A1A06 sing 72 n n 
C41 H30 A1A06 sing 73 n n 
N07 H31 A1A06 sing 74 n n 
N11 H32 A1A06 sing 75 n n 
N25 H33 A1A06 sing 76 n n 
#
_atom_sites.entry_id                     9COS 
_atom_sites.fract_transf_matrix[1][1]    0.013125 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009984 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008017 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 A1A06 A 1 602 700 A1A06 103 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 A1A06 . . . C 3 -11.228 -37.109 -10.804 1 154.88 ? C02 A1A06 602 A 1 
HETATM 2 C C05 A1A06 . . . C 3 -12.546 -37.942 -10.613 1 153.11 ? C05 A1A06 602 A 1 
HETATM 3 C C08 A1A06 . . . C 3 -14.031 -35.911 -10.864 1 140.82 ? C08 A1A06 602 A 1 
HETATM 4 C C09 A1A06 . . . C 3 -14.777 -35.003 -9.783 1 127.25 ? C09 A1A06 602 A 1 
HETATM 5 C C12 A1A06 . . . C 3 -16.735 -34.414 -8.175 1 103.68 ? C12 A1A06 602 A 1 
HETATM 6 C C13 A1A06 . . . C 3 -16.558 -35.027 -6.733 1 110.89 ? C13 A1A06 602 A 1 
HETATM 7 C C15 A1A06 . . . C 3 -14.695 -32.54 -5.824 1 117.44 ? C15 A1A06 602 A 1 
HETATM 8 C C16 A1A06 . . . C 3 -13.648 -32.183 -4.736 1 122.69 ? C16 A1A06 602 A 1 
HETATM 9 C C17 A1A06 . . . C 3 -13.41 -30.683 -4.454 1 120.93 ? C17 A1A06 602 A 1 
HETATM 10 C C18 A1A06 . . . C 3 -12.732 -29.847 -5.365 1 120.69 ? C18 A1A06 602 A 1 
HETATM 11 C C19 A1A06 . . . C 3 -12.508 -28.484 -5.108 1 114.32 ? C19 A1A06 602 A 1 
HETATM 12 C C20 A1A06 . . . C 3 -12.961 -27.913 -3.917 1 112.08 ? C20 A1A06 602 A 1 
HETATM 13 C C21 A1A06 . . . C 3 -13.634 -28.717 -2.993 1 118.73 ? C21 A1A06 602 A 1 
HETATM 14 C C22 A1A06 . . . C 3 -13.854 -30.081 -3.256 1 121.2 ? C22 A1A06 602 A 1 
HETATM 15 C C23 A1A06 . . . C 3 -16.023 -31.696 -5.689 1 109.59 ? C23 A1A06 602 A 1 
HETATM 16 C C26 A1A06 . . . C 3 -17.858 -30.166 -6.717 1 95.06 ? C26 A1A06 602 A 1 
HETATM 17 C C27 A1A06 . . . C 3 -17.758 -28.875 -5.822 1 101.93 ? C27 A1A06 602 A 1 
HETATM 18 C C28 A1A06 . . . C 3 -17.909 -27.492 -6.543 1 88.04 ? C28 A1A06 602 A 1 
HETATM 19 C C29 A1A06 . . . C 3 -18.579 -27.48 -7.929 1 90.14 ? C29 A1A06 602 A 1 
HETATM 20 C C30 A1A06 . . . C 3 -17.871 -27.507 -9.145 1 87.7 ? C30 A1A06 602 A 1 
HETATM 21 C C31 A1A06 . . . C 3 -18.527 -27.492 -10.391 1 81.52 ? C31 A1A06 602 A 1 
HETATM 22 C C32 A1A06 . . . C 3 -19.931 -27.448 -10.404 1 87.19 ? C32 A1A06 602 A 1 
HETATM 23 C C34 A1A06 . . . C 3 -19.984 -27.436 -8.064 1 85.99 ? C34 A1A06 602 A 1 
HETATM 24 C C35 A1A06 . . . C 3 -18.277 -34.227 -8.531 1 101.57 ? C35 A1A06 602 A 1 
HETATM 25 C C36 A1A06 . . . C 3 -18.673 -33.015 -9.396 1 99.88 ? C36 A1A06 602 A 1 
HETATM 26 C C37 A1A06 . . . C 3 -19.599 -32.036 -8.964 1 95.95 ? C37 A1A06 602 A 1 
HETATM 27 C C38 A1A06 . . . C 3 -19.952 -30.934 -9.76 1 95.2 ? C38 A1A06 602 A 1 
HETATM 28 C C39 A1A06 . . . C 3 -19.392 -30.778 -11.031 1 94.38 ? C39 A1A06 602 A 1 
HETATM 29 C C40 A1A06 . . . C 3 -18.477 -31.726 -11.489 1 111.32 ? C40 A1A06 602 A 1 
HETATM 30 C C41 A1A06 . . . C 3 -18.132 -32.821 -10.68 1 103.9 ? C41 A1A06 602 A 1 
HETATM 31 F F01 A1A06 . . . C 3 -10.076 -37.802 -10.65 1 163.49 ? F01 A1A06 602 A 1 
HETATM 32 F F03 A1A06 . . . C 3 -11.091 -36.067 -9.926 1 154.31 ? F03 A1A06 602 A 1 
HETATM 33 F F04 A1A06 . . . C 3 -11.099 -36.54 -12.026 1 147.12 ? F04 A1A06 602 A 1 
HETATM 34 N N07 A1A06 . . . C 3 -13.805 -37.355 -10.64 1 143.48 ? N07 A1A06 602 A 1 
HETATM 35 N N11 A1A06 . . . C 3 -16.023 -35.276 -9.191 1 118.22 ? N11 A1A06 602 A 1 
HETATM 36 N N25 A1A06 . . . C 3 -16.605 -30.998 -6.775 1 103.83 ? N25 A1A06 602 A 1 
HETATM 37 N N33 A1A06 . . . C 3 -20.643 -27.421 -9.249 1 80.78 ? N33 A1A06 602 A 1 
HETATM 38 O O06 A1A06 . . . C 3 -12.316 -39.131 -10.435 1 156.74 ? O06 A1A06 602 A 1 
HETATM 39 O O10 A1A06 . . . C 3 -14.182 -33.972 -9.467 1 123.41 ? O10 A1A06 602 A 1 
HETATM 40 O O24 A1A06 . . . C 3 -16.58 -31.632 -4.592 1 107.49 ? O24 A1A06 602 A 1 
HETATM 41 S S14 A1A06 . . . C 3 -15.034 -34.444 -5.784 1 125.39 ? S14 A1A06 602 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           68 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           1396 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           41 
#