data_9COT
#
_model_server_result.job_id            G4wxSBWxEADisVN6-l58tw 
_model_server_result.datetime_utc      '2025-06-18 20:29:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cot 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    9COT 
#
_exptl.entry_id    9COT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9COT 
_cell.length_a            76.76 
_cell.length_b            100.76 
_cell.length_c            126.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9COT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C 1 1 
A,B,C 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.76 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N27 A1A08 . A A1A08 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 198 n n 
CHA C4D HEM doub 199 n n 
CHA HHA HEM sing 200 n n 
CHB C4A HEM sing 201 n n 
CHB C1B HEM doub 202 n n 
CHB HHB HEM sing 203 n n 
CHC C4B HEM sing 204 n n 
CHC C1C HEM doub 205 n n 
CHC HHC HEM sing 206 n n 
CHD C4C HEM doub 207 n n 
CHD C1D HEM sing 208 n n 
CHD HHD HEM sing 209 n n 
C1A C2A HEM doub 210 n y 
C1A NA HEM sing 211 n y 
C2A C3A HEM sing 212 n y 
C2A CAA HEM sing 213 n n 
C3A C4A HEM doub 214 n y 
C3A CMA HEM sing 215 n n 
C4A NA HEM sing 216 n y 
CMA HMA HEM sing 217 n n 
CMA HMAA HEM sing 218 n n 
CMA HMAB HEM sing 219 n n 
CAA CBA HEM sing 220 n n 
CAA HAA HEM sing 221 n n 
CAA HAAA HEM sing 222 n n 
CBA CGA HEM sing 223 n n 
CBA HBA HEM sing 224 n n 
CBA HBAA HEM sing 225 n n 
CGA O1A HEM doub 226 n n 
CGA O2A HEM sing 227 n n 
C1B C2B HEM sing 228 n n 
C1B NB HEM sing 229 n n 
C2B C3B HEM doub 230 n n 
C2B CMB HEM sing 231 n n 
C3B C4B HEM sing 232 n n 
C3B CAB HEM sing 233 n n 
C4B NB HEM doub 234 n n 
CMB HMB HEM sing 235 n n 
CMB HMBA HEM sing 236 n n 
CMB HMBB HEM sing 237 n n 
CAB CBB HEM doub 238 n n 
CAB HAB HEM sing 239 n n 
CBB HBB HEM sing 240 n n 
CBB HBBA HEM sing 241 n n 
C1C C2C HEM sing 242 n y 
C1C NC HEM sing 243 n y 
C2C C3C HEM doub 244 n y 
C2C CMC HEM sing 245 n n 
C3C C4C HEM sing 246 n y 
C3C CAC HEM sing 247 n n 
C4C NC HEM sing 248 n y 
CMC HMC HEM sing 249 n n 
CMC HMCA HEM sing 250 n n 
CMC HMCB HEM sing 251 n n 
CAC CBC HEM doub 252 n n 
CAC HAC HEM sing 253 n n 
CBC HBC HEM sing 254 n n 
CBC HBCA HEM sing 255 n n 
C1D C2D HEM sing 256 n n 
C1D ND HEM doub 257 n n 
C2D C3D HEM doub 258 n n 
C2D CMD HEM sing 259 n n 
C3D C4D HEM sing 260 n n 
C3D CAD HEM sing 261 n n 
C4D ND HEM sing 262 n n 
CMD HMD HEM sing 263 n n 
CMD HMDA HEM sing 264 n n 
CMD HMDB HEM sing 265 n n 
CAD CBD HEM sing 266 n n 
CAD HAD HEM sing 267 n n 
CAD HADA HEM sing 268 n n 
CBD CGD HEM sing 269 n n 
CBD HBD HEM sing 270 n n 
CBD HBDA HEM sing 271 n n 
CGD O1D HEM doub 272 n n 
CGD O2D HEM sing 273 n n 
O2A H2A HEM sing 274 n n 
O2D H2D HEM sing 275 n n 
FE NA HEM sing 276 n n 
FE NB HEM sing 277 n n 
FE NC HEM sing 278 n n 
FE ND HEM sing 279 n n 
#
_atom_sites.entry_id                     9COT 
_atom_sites.fract_transf_matrix[1][1]    0.013028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009925 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007906 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 A1A08 A 1 602 700 A1A08 154 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -23.227 -30.583 -9.292 1 88.54 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -22.665 -27.851 -13.273 1 86.94 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -22.178 -23.876 -10.549 1 90.97 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -22.921 -26.571 -6.563 1 96.91 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -23.116 -30.194 -10.611 1 88.81 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -23.219 -31.055 -11.774 1 84.25 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -23.062 -30.299 -12.862 1 79.39 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -22.858 -28.931 -12.44 1 75.14 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -23.092 -30.785 -14.326 1 84.75 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -23.457 -32.581 -11.763 1 81.65 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -24.926 -32.897 -12.027 1 85.04 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -25.114 -34.392 -12.063 1 84.34 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -26.197 -34.852 -12.507 1 81.47 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -24.177 -35.125 -11.655 1 90.89 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -22.488 -26.539 -12.888 1 83.98 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -22.291 -25.417 -13.786 1 87.67 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -22.152 -24.306 -13.036 1 95.57 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -22.258 -24.709 -11.644 1 90.38 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -22.263 -25.565 -15.326 1 93.34 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -21.917 -22.831 -13.46 1 96.84 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -21.779 -22.402 -14.721 1 85.64 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -22.387 -24.242 -9.234 1 95.64 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -22.468 -23.346 -8.101 1 108.99 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -22.669 -24.07 -6.998 1 106.59 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -22.729 -25.474 -7.385 1 95.35 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -22.336 -21.808 -8.156 1 106.75 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -22.805 -23.452 -5.584 1 99.3 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -22.838 -24.191 -4.468 1 105.42 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -23.026 -27.895 -6.944 1 92.71 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -23.128 -29.037 -6.058 1 91.34 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -23.214 -30.141 -6.807 1 83.19 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -23.171 -29.743 -8.2 1 85.62 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -23.134 -28.982 -4.516 1 100 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -23.346 -31.588 -6.284 1 84.39 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -24.814 -31.995 -6.381 1 95.88 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -25.125 -33.107 -5.413 1 95.64 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -26.271 -33.131 -4.893 1 81.48 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -24.233 -33.955 -5.151 1 103.3 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -22.898 -28.901 -11.058 1 85.93 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -22.462 -26.073 -11.59 1 84.01 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -22.552 -25.53 -8.756 1 89.29 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -23.055 -28.366 -8.242 1 83 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -22.773 -27.202 -9.898 1 91.48 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#