data_9COT
#
_model_server_result.job_id            mIjQ5Utlf0_XnsLE3U4jVA 
_model_server_result.datetime_utc      '2025-06-18 20:14:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cot 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    9COT 
#
_exptl.entry_id    9COT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              529.617 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-3-phenyl-2-{[(2S)-3-phenyl-2-(2,2,2-trifluoroacetamido)propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9COT 
_cell.length_a            76.76 
_cell.length_b            100.76 
_cell.length_c            126.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9COT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C 1 1 
A,B,C 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.76 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N27 A1A08 . A A1A08 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
#
_chem_comp.formula           'C28 H30 F3 N3 O2 S' 
_chem_comp.formula_weight    529.617 
_chem_comp.id                A1A08 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-3-phenyl-2-{[(2S)-3-phenyl-2-(2,2,2-trifluoroacetamido)propyl]sulfanyl}-N-[3-(pyridin-3-yl)propyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F01 C02 A1A08 sing 1 n n 
C36 C35 A1A08 doub 2 n y 
C36 C37 A1A08 sing 3 n y 
C28 C29 A1A08 doub 4 n y 
C28 N27 A1A08 sing 5 n y 
C35 C34 A1A08 sing 6 n y 
C29 C30 A1A08 sing 7 n y 
C02 F04 A1A08 sing 8 n n 
C02 F03 A1A08 sing 9 n n 
C02 C05 A1A08 sing 10 n n 
C37 C32 A1A08 doub 11 n y 
C34 C33 A1A08 doub 12 n y 
N27 C26 A1A08 doub 13 n y 
O06 C05 A1A08 doub 14 n n 
C05 N07 A1A08 sing 15 n n 
C30 C25 A1A08 doub 16 n y 
C32 C33 A1A08 sing 17 n y 
C32 C31 A1A08 sing 18 n n 
N07 C08 A1A08 sing 19 n n 
C26 C25 A1A08 sing 20 n y 
C31 C08 A1A08 sing 21 n n 
C25 C24 A1A08 sing 22 n n 
C08 C09 A1A08 sing 23 n n 
N21 C22 A1A08 sing 24 n n 
N21 C19 A1A08 sing 25 n n 
C22 C23 A1A08 sing 26 n n 
C24 C23 A1A08 sing 27 n n 
C09 S10 A1A08 sing 28 n n 
C11 C19 A1A08 sing 29 n n 
C11 C12 A1A08 sing 30 n n 
C11 S10 A1A08 sing 31 n n 
C19 O20 A1A08 doub 32 n n 
C12 C13 A1A08 sing 33 n n 
C18 C13 A1A08 doub 34 n y 
C18 C17 A1A08 sing 35 n y 
C13 C14 A1A08 sing 36 n y 
C17 C16 A1A08 doub 37 n y 
C14 C15 A1A08 doub 38 n y 
C16 C15 A1A08 sing 39 n y 
C11 H1 A1A08 sing 40 n n 
C12 H2 A1A08 sing 41 n n 
C12 H3 A1A08 sing 42 n n 
C16 H4 A1A08 sing 43 n n 
C17 H5 A1A08 sing 44 n n 
C18 H6 A1A08 sing 45 n n 
C22 H7 A1A08 sing 46 n n 
C22 H8 A1A08 sing 47 n n 
C23 H9 A1A08 sing 48 n n 
C24 H10 A1A08 sing 49 n n 
C26 H11 A1A08 sing 50 n n 
C29 H12 A1A08 sing 51 n n 
C30 H13 A1A08 sing 52 n n 
C31 H14 A1A08 sing 53 n n 
C31 H15 A1A08 sing 54 n n 
C33 H16 A1A08 sing 55 n n 
C34 H17 A1A08 sing 56 n n 
C35 H18 A1A08 sing 57 n n 
C36 H19 A1A08 sing 58 n n 
C08 H20 A1A08 sing 59 n n 
C09 H21 A1A08 sing 60 n n 
C09 H22 A1A08 sing 61 n n 
C14 H23 A1A08 sing 62 n n 
C15 H24 A1A08 sing 63 n n 
C28 H25 A1A08 sing 64 n n 
C37 H26 A1A08 sing 65 n n 
N07 H27 A1A08 sing 66 n n 
N21 H28 A1A08 sing 67 n n 
C23 H29 A1A08 sing 68 n n 
C24 H30 A1A08 sing 69 n n 
#
_atom_sites.entry_id                     9COT 
_atom_sites.fract_transf_matrix[1][1]    0.013028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009925 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007906 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 A1A08 A 1 602 700 A1A08 154 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 A1A08 . . . C 3 -14.832 -32.749 -6.498 1 130.18 ? C11 A1A08 602 A 1 
HETATM 2 C C12 A1A08 . . . C 3 -13.495 -32.199 -5.882 1 135.71 ? C12 A1A08 602 A 1 
HETATM 3 C C13 A1A08 . . . C 3 -13.564 -30.889 -5.077 1 133.52 ? C13 A1A08 602 A 1 
HETATM 4 C C16 A1A08 . . . C 3 -13.652 -28.477 -3.557 1 125.49 ? C16 A1A08 602 A 1 
HETATM 5 C C17 A1A08 . . . C 3 -13.173 -28.48 -4.864 1 126.51 ? C17 A1A08 602 A 1 
HETATM 6 C C18 A1A08 . . . C 3 -13.128 -29.666 -5.604 1 124.64 ? C18 A1A08 602 A 1 
HETATM 7 C C19 A1A08 . . . C 3 -16.098 -31.845 -6.272 1 123.84 ? C19 A1A08 602 A 1 
HETATM 8 C C22 A1A08 . . . C 3 -18.081 -30.482 -7.307 1 106.97 ? C22 A1A08 602 A 1 
HETATM 9 C C23 A1A08 . . . C 3 -17.913 -29.205 -6.391 1 107.57 ? C23 A1A08 602 A 1 
HETATM 10 C C24 A1A08 . . . C 3 -18.161 -27.813 -7.042 1 106.98 ? C24 A1A08 602 A 1 
HETATM 11 C C25 A1A08 . . . C 3 -18.728 -27.839 -8.456 1 87.5 ? C25 A1A08 602 A 1 
HETATM 12 C C26 A1A08 . . . C 3 -20.114 -27.822 -8.707 1 85.06 ? C26 A1A08 602 A 1 
HETATM 13 C C29 A1A08 . . . C 3 -18.48 -27.915 -10.889 1 99.51 ? C29 A1A08 602 A 1 
HETATM 14 C C30 A1A08 . . . C 3 -17.926 -27.886 -9.605 1 98.81 ? C30 A1A08 602 A 1 
HETATM 15 C C31 A1A08 . . . C 3 -18.23 -34.975 -8.582 1 118.13 ? C31 A1A08 602 A 1 
HETATM 16 C C32 A1A08 . . . C 3 -18.521 -33.707 -9.406 1 111.26 ? C32 A1A08 602 A 1 
HETATM 17 C C33 A1A08 . . . C 3 -19.72 -32.991 -9.27 1 103.06 ? C33 A1A08 602 A 1 
HETATM 18 C C34 A1A08 . . . C 3 -19.989 -31.84 -10.021 1 100.92 ? C34 A1A08 602 A 1 
HETATM 19 C C35 A1A08 . . . C 3 -19.06 -31.361 -10.939 1 103.12 ? C35 A1A08 602 A 1 
HETATM 20 C C36 A1A08 . . . C 3 -17.862 -32.052 -11.093 1 115.93 ? C36 A1A08 602 A 1 
HETATM 21 C C02 A1A08 . . . C 3 -14.4 -37.427 -10.35 1 159.78 ? C02 A1A08 602 A 1 
HETATM 22 C C05 A1A08 . . . C 3 -15.038 -36.198 -9.65 1 148.01 ? C05 A1A08 602 A 1 
HETATM 23 C C08 A1A08 . . . C 3 -16.732 -35.188 -8.088 1 129.66 ? C08 A1A08 602 A 1 
HETATM 24 C C09 A1A08 . . . C 3 -16.64 -35.372 -6.529 1 126.91 ? C09 A1A08 602 A 1 
HETATM 25 C C14 A1A08 . . . C 3 -14.027 -30.865 -3.752 1 135.1 ? C14 A1A08 602 A 1 
HETATM 26 C C15 A1A08 . . . C 3 -14.079 -29.682 -3.006 1 131.61 ? C15 A1A08 602 A 1 
HETATM 27 C C28 A1A08 . . . C 3 -19.873 -27.891 -11.017 1 97.57 ? C28 A1A08 602 A 1 
HETATM 28 C C37 A1A08 . . . C 3 -17.601 -33.204 -10.338 1 123.96 ? C37 A1A08 602 A 1 
HETATM 29 F F01 A1A08 . . . C 3 -14.419 -37.325 -11.729 1 172.95 ? F01 A1A08 602 A 1 
HETATM 30 F F03 A1A08 . . . C 3 -13.079 -37.6 -10.091 1 162.74 ? F03 A1A08 602 A 1 
HETATM 31 F F04 A1A08 . . . C 3 -14.961 -38.633 -10.114 1 153.98 ? F04 A1A08 602 A 1 
HETATM 32 N N07 A1A08 . . . C 3 -16.104 -36.358 -8.792 1 146.05 ? N07 A1A08 602 A 1 
HETATM 33 N N21 A1A08 . . . C 3 -16.838 -31.334 -7.388 1 117.45 ? N21 A1A08 602 A 1 
HETATM 34 N N27 A1A08 . . . C 3 -20.685 -27.846 -9.934 1 89.47 ? N27 A1A08 602 A 1 
HETATM 35 O O06 A1A08 . . . C 3 -14.519 -35.131 -9.931 1 144.5 ? O06 A1A08 602 A 1 
HETATM 36 O O20 A1A08 . . . C 3 -16.5 -31.615 -5.139 1 118.87 ? O20 A1A08 602 A 1 
HETATM 37 S S10 A1A08 . . . C 3 -15.135 -34.508 -5.799 1 147.08 ? S10 A1A08 602 A 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           37 
#