data_9COV # _model_server_result.job_id CmcQDurlj7p_I1L50gIJdg _model_server_result.datetime_utc '2025-01-09 21:00:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9COV # _exptl.entry_id 9COV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9COV _cell.length_a 75.399 _cell.length_b 99.77 _cell.length_c 122.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9COV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N28 A1A4S . A A1A4S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 210 n n CHA C4D HEM doub 211 n n CHA HHA HEM sing 212 n n CHB C4A HEM sing 213 n n CHB C1B HEM doub 214 n n CHB HHB HEM sing 215 n n CHC C4B HEM sing 216 n n CHC C1C HEM doub 217 n n CHC HHC HEM sing 218 n n CHD C4C HEM doub 219 n n CHD C1D HEM sing 220 n n CHD HHD HEM sing 221 n n C1A C2A HEM doub 222 n y C1A NA HEM sing 223 n y C2A C3A HEM sing 224 n y C2A CAA HEM sing 225 n n C3A C4A HEM doub 226 n y C3A CMA HEM sing 227 n n C4A NA HEM sing 228 n y CMA HMA HEM sing 229 n n CMA HMAA HEM sing 230 n n CMA HMAB HEM sing 231 n n CAA CBA HEM sing 232 n n CAA HAA HEM sing 233 n n CAA HAAA HEM sing 234 n n CBA CGA HEM sing 235 n n CBA HBA HEM sing 236 n n CBA HBAA HEM sing 237 n n CGA O1A HEM doub 238 n n CGA O2A HEM sing 239 n n C1B C2B HEM sing 240 n n C1B NB HEM sing 241 n n C2B C3B HEM doub 242 n n C2B CMB HEM sing 243 n n C3B C4B HEM sing 244 n n C3B CAB HEM sing 245 n n C4B NB HEM doub 246 n n CMB HMB HEM sing 247 n n CMB HMBA HEM sing 248 n n CMB HMBB HEM sing 249 n n CAB CBB HEM doub 250 n n CAB HAB HEM sing 251 n n CBB HBB HEM sing 252 n n CBB HBBA HEM sing 253 n n C1C C2C HEM sing 254 n y C1C NC HEM sing 255 n y C2C C3C HEM doub 256 n y C2C CMC HEM sing 257 n n C3C C4C HEM sing 258 n y C3C CAC HEM sing 259 n n C4C NC HEM sing 260 n y CMC HMC HEM sing 261 n n CMC HMCA HEM sing 262 n n CMC HMCB HEM sing 263 n n CAC CBC HEM doub 264 n n CAC HAC HEM sing 265 n n CBC HBC HEM sing 266 n n CBC HBCA HEM sing 267 n n C1D C2D HEM sing 268 n n C1D ND HEM doub 269 n n C2D C3D HEM doub 270 n n C2D CMD HEM sing 271 n n C3D C4D HEM sing 272 n n C3D CAD HEM sing 273 n n C4D ND HEM sing 274 n n CMD HMD HEM sing 275 n n CMD HMDA HEM sing 276 n n CMD HMDB HEM sing 277 n n CAD CBD HEM sing 278 n n CAD HAD HEM sing 279 n n CAD HADA HEM sing 280 n n CBD CGD HEM sing 281 n n CBD HBD HEM sing 282 n n CBD HBDA HEM sing 283 n n CGD O1D HEM doub 284 n n CGD O2D HEM sing 285 n n O2A H2A HEM sing 286 n n O2D H2D HEM sing 287 n n FE NA HEM sing 288 n n FE NB HEM sing 289 n n FE NC HEM sing 290 n n FE ND HEM sing 291 n n # _atom_sites.entry_id 9COV _atom_sites.fract_transf_matrix[1][1] 0.013263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 A1A4S A 1 602 700 A1A4S 420 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -14.89 -19.897 -8.494 1 98.46 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -15.398 -22.692 -12.442 1 100.55 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -16.045 -26.558 -9.58 1 104.69 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -15.299 -23.817 -5.642 1 109.26 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -14.976 -20.301 -9.812 1 95.47 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -14.853 -19.456 -10.983 1 100.06 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -14.993 -20.228 -12.069 1 91.45 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -15.208 -21.591 -11.632 1 97.67 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -14.937 -19.767 -13.54 1 85.01 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -14.603 -17.931 -10.968 1 90.11 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -13.111 -17.657 -11.144 1 71.57 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -12.875 -16.189 -11.398 1 89.9 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -11.745 -15.815 -11.809 1 100.93 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -13.821 -15.387 -11.193 1 79.42 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -15.633 -23.982 -12.013 1 103.8 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -15.893 -25.129 -12.864 1 104.98 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -16.078 -26.197 -12.066 1 98.44 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -15.931 -25.753 -10.694 1 97.1 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -15.943 -25.051 -14.41 1 107.7 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -16.376 -27.674 -12.435 1 110.05 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -16.368 -28.148 -13.685 1 106.12 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -15.831 -26.178 -8.273 1 112.34 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -15.724 -27.066 -7.134 1 113.18 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -15.511 -26.327 -6.042 1 107.55 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -15.485 -24.925 -6.449 1 107.09 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -15.829 -28.606 -7.182 1 116.46 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -15.348 -26.929 -4.622 1 109.27 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -15.021 -26.199 -3.55 1 122.38 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -15.17 -22.505 -6.052 1 104.41 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -15.074 -21.334 -5.203 1 103.55 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -14.969 -20.26 -5.999 1 103.71 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -14.982 -20.703 -7.376 1 94.79 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -15.104 -21.343 -3.658 1 102.98 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -14.824 -18.789 -5.569 1 90.89 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -13.335 -18.575 -5.332 1 93.9 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -13.069 -17.215 -4.75 1 100.58 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -11.959 -17.036 -4.188 1 92.14 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -13.953 -16.323 -4.842 1 85.39 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -15.19 -21.594 -10.25 1 100.19 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -15.663 -24.397 -10.695 1 100.64 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -15.681 -24.881 -7.819 1 104.98 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -15.109 -22.077 -7.365 1 101.02 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -15.316 -23.224 -9.026 1 108.23 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 43 #