data_9COV # _model_server_result.job_id rkjFLHqYBsdxm7RvcX1bbw _model_server_result.datetime_utc '2025-01-09 21:23:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9COV # _exptl.entry_id 9COV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 577.739 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9COV _cell.length_a 75.399 _cell.length_b 99.77 _cell.length_c 122.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9COV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N28 A1A4S . A A1A4S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? # _chem_comp.formula 'C34 H35 N5 O2 S' _chem_comp.formula_weight 577.739 _chem_comp.id A1A4S _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-(1H-indol-3-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N37 C36 A1A4S sing 1 n y N37 C38 A1A4S sing 2 n y C42 C36 A1A4S doub 3 n y C42 C41 A1A4S sing 4 n y C36 C35 A1A4S sing 5 n y C38 C21 A1A4S doub 6 n y C41 C40 A1A4S doub 7 n y C32 C33 A1A4S doub 8 n y C32 N31 A1A4S sing 9 n y C26 C27 A1A4S doub 10 n y C26 C25 A1A4S sing 11 n y C33 C34 A1A4S sing 12 n y C35 C21 A1A4S sing 13 n y C35 C39 A1A4S doub 14 n y C21 C20 A1A4S sing 15 n n C27 N28 A1A4S sing 16 n y N31 C30 A1A4S doub 17 n y C34 C23 A1A4S doub 18 n y C40 C39 A1A4S sing 19 n y C30 C23 A1A4S sing 20 n y C23 C11 A1A4S sing 21 n n C25 C24 A1A4S doub 22 n y O22 C11 A1A4S doub 23 n n C20 C09 A1A4S sing 24 n n N28 C29 A1A4S doub 25 n y C11 N10 A1A4S sing 26 n n N10 C09 A1A4S sing 27 n n C24 C29 A1A4S sing 28 n y C24 C01 A1A4S sing 29 n n C09 C08 A1A4S sing 30 n n C08 S07 A1A4S sing 31 n n C01 C02 A1A4S sing 32 n n N04 C03 A1A4S sing 33 n n N04 C05 A1A4S sing 34 n n C03 C02 A1A4S sing 35 n n C15 C19 A1A4S doub 36 n y C15 C16 A1A4S sing 37 n y C19 C14 A1A4S sing 38 n y C06 C05 A1A4S sing 39 n n C06 S07 A1A4S sing 40 n n C06 C13 A1A4S sing 41 n n C05 O12 A1A4S doub 42 n n C16 C17 A1A4S doub 43 n y C14 C13 A1A4S sing 44 n n C14 C18 A1A4S doub 45 n y C17 C18 A1A4S sing 46 n y C13 H1 A1A4S sing 47 n n C13 H2 A1A4S sing 48 n n C15 H3 A1A4S sing 49 n n C16 H4 A1A4S sing 50 n n C17 H5 A1A4S sing 51 n n C18 H6 A1A4S sing 52 n n C19 H7 A1A4S sing 53 n n C20 H8 A1A4S sing 54 n n C20 H9 A1A4S sing 55 n n C01 H10 A1A4S sing 56 n n C01 H11 A1A4S sing 57 n n C02 H12 A1A4S sing 58 n n C02 H13 A1A4S sing 59 n n C03 H14 A1A4S sing 60 n n C03 H15 A1A4S sing 61 n n C06 H16 A1A4S sing 62 n n C08 H17 A1A4S sing 63 n n C08 H18 A1A4S sing 64 n n C09 H19 A1A4S sing 65 n n C25 H20 A1A4S sing 66 n n C26 H21 A1A4S sing 67 n n C27 H22 A1A4S sing 68 n n C29 H23 A1A4S sing 69 n n C30 H24 A1A4S sing 70 n n C32 H25 A1A4S sing 71 n n C33 H26 A1A4S sing 72 n n C34 H27 A1A4S sing 73 n n C38 H28 A1A4S sing 74 n n C39 H29 A1A4S sing 75 n n C40 H30 A1A4S sing 76 n n C41 H31 A1A4S sing 77 n n C42 H32 A1A4S sing 78 n n N04 H33 A1A4S sing 79 n n N10 H34 A1A4S sing 80 n n N37 H35 A1A4S sing 81 n n # _atom_sites.entry_id 9COV _atom_sites.fract_transf_matrix[1][1] 0.013263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 A1A4S A 1 602 700 A1A4S 420 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1A4S . . . C 3 -23.253 -16.67 -8.749 1 130.84 ? C11 A1A4S 602 A 1 HETATM 2 C C13 A1A4S . . . C 3 -23.358 -17.743 -4.036 1 126.13 ? C13 A1A4S 602 A 1 HETATM 3 C C14 A1A4S . . . C 3 -24.011 -19.127 -4.228 1 121.16 ? C14 A1A4S 602 A 1 HETATM 4 C C15 A1A4S . . . C 3 -25.572 -20.569 -5.396 1 128.32 ? C15 A1A4S 602 A 1 HETATM 5 C C16 A1A4S . . . C 3 -25.198 -21.641 -4.577 1 120.53 ? C16 A1A4S 602 A 1 HETATM 6 C C17 A1A4S . . . C 3 -24.23 -21.457 -3.583 1 119.54 ? C17 A1A4S 602 A 1 HETATM 7 C C18 A1A4S . . . C 3 -23.64 -20.2 -3.409 1 123.23 ? C18 A1A4S 602 A 1 HETATM 8 C C19 A1A4S . . . C 3 -24.979 -19.313 -5.222 1 125.76 ? C19 A1A4S 602 A 1 HETATM 9 C C20 A1A4S . . . C 3 -20.688 -14.485 -8.858 1 114.66 ? C20 A1A4S 602 A 1 HETATM 10 C C23 A1A4S . . . C 3 -24.263 -15.599 -9.254 1 144.01 ? C23 A1A4S 602 A 1 HETATM 11 C C01 A1A4S . . . C 3 -20.27 -22.59 -6.446 1 111.78 ? C01 A1A4S 602 A 1 HETATM 12 C C02 A1A4S . . . C 3 -20.044 -21.368 -5.535 1 112.37 ? C02 A1A4S 602 A 1 HETATM 13 C C03 A1A4S . . . C 3 -19.731 -20.074 -6.308 1 107.94 ? C03 A1A4S 602 A 1 HETATM 14 C C05 A1A4S . . . C 3 -21.235 -18.335 -5.196 1 122.28 ? C05 A1A4S 602 A 1 HETATM 15 C C06 A1A4S . . . C 3 -22.428 -17.355 -5.202 1 126.64 ? C06 A1A4S 602 A 1 HETATM 16 C C08 A1A4S . . . C 3 -21.622 -14.624 -6.496 1 133.75 ? C08 A1A4S 602 A 1 HETATM 17 C C09 A1A4S . . . C 3 -21.043 -15.423 -7.688 1 124.69 ? C09 A1A4S 602 A 1 HETATM 18 C C21 A1A4S . . . C 3 -19.947 -15.14 -10.04 1 116.5 ? C21 A1A4S 602 A 1 HETATM 19 C C24 A1A4S . . . C 3 -19.422 -22.585 -7.73 1 95.39 ? C24 A1A4S 602 A 1 HETATM 20 C C25 A1A4S . . . C 3 -20.034 -22.336 -8.965 1 89.91 ? C25 A1A4S 602 A 1 HETATM 21 C C26 A1A4S . . . C 3 -19.229 -22.34 -10.11 1 104.15 ? C26 A1A4S 602 A 1 HETATM 22 C C27 A1A4S . . . C 3 -17.859 -22.592 -9.987 1 109.88 ? C27 A1A4S 602 A 1 HETATM 23 C C29 A1A4S . . . C 3 -18.049 -22.834 -7.663 1 105.92 ? C29 A1A4S 602 A 1 HETATM 24 C C30 A1A4S . . . C 3 -23.992 -14.231 -9.399 1 142.33 ? C30 A1A4S 602 A 1 HETATM 25 C C32 A1A4S . . . C 3 -26.161 -13.824 -10.212 1 141.48 ? C32 A1A4S 602 A 1 HETATM 26 C C33 A1A4S . . . C 3 -26.509 -15.175 -10.104 1 145.16 ? C33 A1A4S 602 A 1 HETATM 27 C C34 A1A4S . . . C 3 -25.541 -16.065 -9.623 1 146.68 ? C34 A1A4S 602 A 1 HETATM 28 C C35 A1A4S . . . C 3 -19.281 -16.38 -10.102 1 109.46 ? C35 A1A4S 602 A 1 HETATM 29 C C36 A1A4S . . . C 3 -18.779 -16.498 -11.399 1 113.51 ? C36 A1A4S 602 A 1 HETATM 30 C C38 A1A4S . . . C 3 -19.816 -14.558 -11.305 1 106.94 ? C38 A1A4S 602 A 1 HETATM 31 C C39 A1A4S . . . C 3 -19.052 -17.419 -9.185 1 106.98 ? C39 A1A4S 602 A 1 HETATM 32 C C40 A1A4S . . . C 3 -18.342 -18.566 -9.535 1 108.14 ? C40 A1A4S 602 A 1 HETATM 33 C C41 A1A4S . . . C 3 -17.849 -18.678 -10.834 1 113.42 ? C41 A1A4S 602 A 1 HETATM 34 C C42 A1A4S . . . C 3 -18.062 -17.646 -11.755 1 119.02 ? C42 A1A4S 602 A 1 HETATM 35 N N04 A1A4S . . . C 3 -20.886 -19.159 -6.367 1 119.08 ? N04 A1A4S 602 A 1 HETATM 36 N N10 A1A4S . . . C 3 -21.907 -16.554 -8.112 1 129.21 ? N10 A1A4S 602 A 1 HETATM 37 N N28 A1A4S . . . C 3 -17.321 -22.827 -8.784 1 102.92 ? N28 A1A4S 602 A 1 HETATM 38 N N31 A1A4S . . . C 3 -24.936 -13.398 -9.863 1 140.73 ? N31 A1A4S 602 A 1 HETATM 39 N N37 A1A4S . . . C 3 -19.119 -15.393 -12.08 1 115.99 ? N37 A1A4S 602 A 1 HETATM 40 O O12 A1A4S . . . C 3 -20.575 -18.442 -4.204 1 119.98 ? O12 A1A4S 602 A 1 HETATM 41 O O22 A1A4S . . . C 3 -23.635 -17.79 -8.931 1 128.09 ? O22 A1A4S 602 A 1 HETATM 42 S S07 A1A4S . . . C 3 -21.859 -15.631 -4.98 1 144.91 ? S07 A1A4S 602 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #