data_9COW # _model_server_result.job_id 27JN4QrL1lKQ0wuslRrTwQ _model_server_result.datetime_utc '2025-01-09 21:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 9COW # _exptl.entry_id 9COW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.762 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9COW _cell.length_a 76.19 _cell.length_b 100.09 _cell.length_c 121.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9COW _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -100.09 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 D N11 A1A4V . A A1A4V 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? # _chem_comp.formula 'C36 H36 N4 O2 S' _chem_comp.formula_weight 588.762 _chem_comp.id A1A4V _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-(naphthalen-1-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 A1A4V doub 1 n y C29 C30 A1A4V sing 2 n y C28 C27 A1A4V sing 3 n y C30 C31 A1A4V doub 4 n y C27 C26 A1A4V doub 5 n y C42 C43 A1A4V doub 6 n y C42 C41 A1A4V sing 7 n y C31 C26 A1A4V sing 8 n y C31 C32 A1A4V sing 9 n y C43 C38 A1A4V sing 10 n y C26 C25 A1A4V sing 11 n y C10 C09 A1A4V doub 12 n y C10 N11 A1A4V sing 13 n y C09 C08 A1A4V sing 14 n y C41 N40 A1A4V doub 15 n y C32 C33 A1A4V doub 16 n y O37 C36 A1A4V doub 17 n n C38 C36 A1A4V sing 18 n n C38 C39 A1A4V doub 19 n y N40 C39 A1A4V sing 20 n y C36 N35 A1A4V sing 21 n n C25 C24 A1A4V sing 22 n n C25 C34 A1A4V doub 23 n y N11 C12 A1A4V doub 24 n y C08 C07 A1A4V doub 25 n y C24 C23 A1A4V sing 26 n n C33 C34 A1A4V sing 27 n y N35 C23 A1A4V sing 28 n n C23 C22 A1A4V sing 29 n n C12 C07 A1A4V sing 30 n y C07 C06 A1A4V sing 31 n n N03 C04 A1A4V sing 32 n n N03 C02 A1A4V sing 33 n n C04 C05 A1A4V sing 34 n n C22 S21 A1A4V sing 35 n n C06 C05 A1A4V sing 36 n n C19 C20 A1A4V doub 37 n y C19 C18 A1A4V sing 38 n y C20 C15 A1A4V sing 39 n y C13 C02 A1A4V sing 40 n n C13 S21 A1A4V sing 41 n n C13 C14 A1A4V sing 42 n n C02 O01 A1A4V doub 43 n n C14 C15 A1A4V sing 44 n n C15 C16 A1A4V doub 45 n y C18 C17 A1A4V doub 46 n y C16 C17 A1A4V sing 47 n y C12 H1 A1A4V sing 48 n n C14 H2 A1A4V sing 49 n n C14 H3 A1A4V sing 50 n n C16 H4 A1A4V sing 51 n n C19 H5 A1A4V sing 52 n n C20 H6 A1A4V sing 53 n n C22 H7 A1A4V sing 54 n n C22 H8 A1A4V sing 55 n n C23 H9 A1A4V sing 56 n n C10 H10 A1A4V sing 57 n n C13 H11 A1A4V sing 58 n n C17 H12 A1A4V sing 59 n n C18 H13 A1A4V sing 60 n n C04 H14 A1A4V sing 61 n n C04 H15 A1A4V sing 62 n n C05 H16 A1A4V sing 63 n n C05 H17 A1A4V sing 64 n n C06 H18 A1A4V sing 65 n n C06 H19 A1A4V sing 66 n n C08 H20 A1A4V sing 67 n n C09 H21 A1A4V sing 68 n n C24 H22 A1A4V sing 69 n n C24 H23 A1A4V sing 70 n n C27 H24 A1A4V sing 71 n n C28 H25 A1A4V sing 72 n n C29 H26 A1A4V sing 73 n n C30 H27 A1A4V sing 74 n n C32 H28 A1A4V sing 75 n n C33 H29 A1A4V sing 76 n n C34 H30 A1A4V sing 77 n n C39 H31 A1A4V sing 78 n n C41 H32 A1A4V sing 79 n n C42 H33 A1A4V sing 80 n n C43 H34 A1A4V sing 81 n n N03 H35 A1A4V sing 82 n n N35 H36 A1A4V sing 83 n n # _atom_sites.entry_id 9COW _atom_sites.fract_transf_matrix[1][1] 0.013125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 600 GOL GOL . D 4 A1A4V A 1 603 700 A1A4V 422 . E 5 HOH A 1 701 1 HOH HOH . E 5 HOH A 2 702 33 HOH HOH . E 5 HOH A 3 703 13 HOH HOH . E 5 HOH A 4 704 27 HOH HOH . E 5 HOH A 5 705 6 HOH HOH . E 5 HOH A 6 706 16 HOH HOH . E 5 HOH A 7 707 39 HOH HOH . E 5 HOH A 8 708 40 HOH HOH . E 5 HOH A 9 709 11 HOH HOH . E 5 HOH A 10 710 24 HOH HOH . E 5 HOH A 11 711 2 HOH HOH . E 5 HOH A 12 712 20 HOH HOH . E 5 HOH A 13 713 29 HOH HOH . E 5 HOH A 14 714 3 HOH HOH . E 5 HOH A 15 715 41 HOH HOH . E 5 HOH A 16 716 31 HOH HOH . E 5 HOH A 17 717 38 HOH HOH . E 5 HOH A 18 718 17 HOH HOH . E 5 HOH A 19 719 21 HOH HOH . E 5 HOH A 20 720 25 HOH HOH . E 5 HOH A 21 721 37 HOH HOH . E 5 HOH A 22 722 5 HOH HOH . E 5 HOH A 23 723 18 HOH HOH . E 5 HOH A 24 724 8 HOH HOH . E 5 HOH A 25 725 22 HOH HOH . E 5 HOH A 26 726 14 HOH HOH . E 5 HOH A 27 727 7 HOH HOH . E 5 HOH A 28 728 30 HOH HOH . E 5 HOH A 29 729 12 HOH HOH . E 5 HOH A 30 730 19 HOH HOH . E 5 HOH A 31 731 10 HOH HOH . E 5 HOH A 32 732 28 HOH HOH . E 5 HOH A 33 733 4 HOH HOH . E 5 HOH A 34 734 32 HOH HOH . E 5 HOH A 35 735 23 HOH HOH . E 5 HOH A 36 736 35 HOH HOH . E 5 HOH A 37 737 36 HOH HOH . E 5 HOH A 38 738 26 HOH HOH . E 5 HOH A 39 739 15 HOH HOH . E 5 HOH A 40 740 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 A1A4V . . . D 4 -19.578 -27.025 -6.822 1 83.19 ? C12 A1A4V 603 A 1 HETATM 2 C C14 A1A4V . . . D 4 -13.33 -32.08 -3.911 1 91.7 ? C14 A1A4V 603 A 1 HETATM 3 C C15 A1A4V . . . D 4 -12.911 -30.602 -3.86 1 86.65 ? C15 A1A4V 603 A 1 HETATM 4 C C16 A1A4V . . . D 4 -13.085 -29.801 -2.706 1 88.7 ? C16 A1A4V 603 A 1 HETATM 5 C C19 A1A4V . . . D 4 -12.031 -28.629 -5 1 95.79 ? C19 A1A4V 603 A 1 HETATM 6 C C20 A1A4V . . . D 4 -12.388 -29.976 -4.998 1 91.34 ? C20 A1A4V 603 A 1 HETATM 7 C C22 A1A4V . . . D 4 -16.798 -34.629 -5.443 1 93.28 ? C22 A1A4V 603 A 1 HETATM 8 C C23 A1A4V . . . D 4 -16.509 -34.545 -7.005 1 85.12 ? C23 A1A4V 603 A 1 HETATM 9 C C10 A1A4V . . . D 4 -19.468 -27.015 -9.127 1 76.72 ? C10 A1A4V 603 A 1 HETATM 10 C C13 A1A4V . . . D 4 -14.628 -32.395 -4.782 1 88.06 ? C13 A1A4V 603 A 1 HETATM 11 C C17 A1A4V . . . D 4 -12.727 -28.443 -2.7 1 94.02 ? C17 A1A4V 603 A 1 HETATM 12 C C18 A1A4V . . . D 4 -12.196 -27.849 -3.853 1 92.97 ? C18 A1A4V 603 A 1 HETATM 13 C C02 A1A4V . . . D 4 -15.817 -31.428 -4.558 1 78.15 ? C02 A1A4V 603 A 1 HETATM 14 C C04 A1A4V . . . D 4 -17.498 -29.746 -5.563 1 78.52 ? C04 A1A4V 603 A 1 HETATM 15 C C05 A1A4V . . . D 4 -17.178 -28.53 -4.667 1 87.07 ? C05 A1A4V 603 A 1 HETATM 16 C C06 A1A4V . . . D 4 -17.502 -27.164 -5.301 1 80.05 ? C06 A1A4V 603 A 1 HETATM 17 C C07 A1A4V . . . D 4 -18.173 -27.133 -6.674 1 78.99 ? C07 A1A4V 603 A 1 HETATM 18 C C08 A1A4V . . . D 4 -17.435 -27.166 -7.867 1 79.89 ? C08 A1A4V 603 A 1 HETATM 19 C C09 A1A4V . . . D 4 -18.073 -27.117 -9.102 1 76.57 ? C09 A1A4V 603 A 1 HETATM 20 C C24 A1A4V . . . D 4 -17.856 -34.517 -7.841 1 78.57 ? C24 A1A4V 603 A 1 HETATM 21 C C25 A1A4V . . . D 4 -18.45 -33.128 -8.129 1 76.04 ? C25 A1A4V 603 A 1 HETATM 22 C C26 A1A4V . . . D 4 -17.989 -32.36 -9.262 1 76.57 ? C26 A1A4V 603 A 1 HETATM 23 C C27 A1A4V . . . D 4 -16.99 -32.822 -10.156 1 74.59 ? C27 A1A4V 603 A 1 HETATM 24 C C28 A1A4V . . . D 4 -16.546 -32.106 -11.235 1 79.32 ? C28 A1A4V 603 A 1 HETATM 25 C C29 A1A4V . . . D 4 -17.096 -30.815 -11.51 1 79.13 ? C29 A1A4V 603 A 1 HETATM 26 C C30 A1A4V . . . D 4 -18.061 -30.332 -10.673 1 80.17 ? C30 A1A4V 603 A 1 HETATM 27 C C31 A1A4V . . . D 4 -18.53 -31.071 -9.548 1 79.29 ? C31 A1A4V 603 A 1 HETATM 28 C C32 A1A4V . . . D 4 -19.533 -30.56 -8.685 1 79.83 ? C32 A1A4V 603 A 1 HETATM 29 C C33 A1A4V . . . D 4 -19.974 -31.274 -7.61 1 80.87 ? C33 A1A4V 603 A 1 HETATM 30 C C34 A1A4V . . . D 4 -19.426 -32.577 -7.325 1 80.23 ? C34 A1A4V 603 A 1 HETATM 31 C C36 A1A4V . . . D 4 -14.438 -35.568 -8.171 1 93.58 ? C36 A1A4V 603 A 1 HETATM 32 C C38 A1A4V . . . D 4 -13.566 -36.779 -8.494 1 94.59 ? C38 A1A4V 603 A 1 HETATM 33 C C39 A1A4V . . . D 4 -13.791 -38.047 -7.939 1 91.32 ? C39 A1A4V 603 A 1 HETATM 34 C C41 A1A4V . . . D 4 -12.004 -39.048 -9.039 1 93.24 ? C41 A1A4V 603 A 1 HETATM 35 C C42 A1A4V . . . D 4 -11.682 -37.832 -9.656 1 96.48 ? C42 A1A4V 603 A 1 HETATM 36 C C43 A1A4V . . . D 4 -12.466 -36.702 -9.38 1 95.71 ? C43 A1A4V 603 A 1 HETATM 37 N N03 A1A4V . . . D 4 -16.373 -30.673 -5.661 1 83.09 ? N03 A1A4V 603 A 1 HETATM 38 N N11 A1A4V . . . D 4 -20.213 -26.97 -8 1 79.71 ? N11 A1A4V 603 A 1 HETATM 39 N N35 A1A4V . . . D 4 -15.609 -35.672 -7.379 1 89.97 ? N35 A1A4V 603 A 1 HETATM 40 N N40 A1A4V . . . D 4 -13.052 -39.154 -8.185 1 93.38 ? N40 A1A4V 603 A 1 HETATM 41 O O01 A1A4V . . . D 4 -16.26 -31.319 -3.429 1 79.02 ? O01 A1A4V 603 A 1 HETATM 42 O O37 A1A4V . . . D 4 -14.139 -34.469 -8.595 1 90.12 ? O37 A1A4V 603 A 1 HETATM 43 S S21 A1A4V . . . D 4 -15.335 -34.114 -4.406 1 83.77 ? S21 A1A4V 603 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 54 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #