data_9COX # _model_server_result.job_id 0kTLv7MDbHYU71Ri362P1A _model_server_result.datetime_utc '2025-02-05 09:40:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9COX # _exptl.entry_id 9COX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.762 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9COX _cell.length_a 75.599 _cell.length_b 100.95 _cell.length_c 123.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9COX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N33 A1A4K . A A1A4K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? # _chem_comp.formula 'C36 H36 N4 O2 S' _chem_comp.formula_weight 588.762 _chem_comp.id A1A4K _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2S)-1-(naphthalen-1-yl)-3-{[(2S)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 A1A4K doub 1 n y C26 C22 A1A4K sing 2 n y C25 C24 A1A4K sing 3 n y C22 C21 A1A4K doub 4 n y C38 C39 A1A4K doub 5 n y C38 C37 A1A4K sing 6 n y C24 C43 A1A4K doub 7 n y C24 C23 A1A4K sing 8 n y C39 C28 A1A4K sing 9 n y C32 C31 A1A4K doub 10 n y C32 N33 A1A4K sing 11 n y C31 C30 A1A4K sing 12 n y C43 C42 A1A4K sing 13 n y C37 N36 A1A4K doub 14 n y C21 C23 A1A4K sing 15 n y C21 C20 A1A4K sing 16 n n C23 C40 A1A4K doub 17 n y N33 C34 A1A4K doub 18 n y C42 C41 A1A4K doub 19 n y C28 C11 A1A4K sing 20 n n C28 C35 A1A4K doub 21 n y C30 C29 A1A4K doub 22 n y C20 C09 A1A4K sing 23 n n N36 C35 A1A4K sing 24 n y N10 C11 A1A4K sing 25 n n N10 C09 A1A4K sing 26 n n C40 C41 A1A4K sing 27 n y C11 O27 A1A4K doub 28 n n C34 C29 A1A4K sing 29 n y C09 C08 A1A4K sing 30 n n C29 C01 A1A4K sing 31 n n C08 S07 A1A4K sing 32 n n C01 C02 A1A4K sing 33 n n C03 N04 A1A4K sing 34 n n C03 C02 A1A4K sing 35 n n N04 C05 A1A4K sing 36 n n S07 C06 A1A4K sing 37 n n C05 C06 A1A4K sing 38 n n C05 O12 A1A4K doub 39 n n C06 C13 A1A4K sing 40 n n C13 C14 A1A4K sing 41 n n C18 C14 A1A4K doub 42 n y C18 C17 A1A4K sing 43 n y C14 C19 A1A4K sing 44 n y C17 C16 A1A4K doub 45 n y C19 C15 A1A4K doub 46 n y C16 C15 A1A4K sing 47 n y C01 H1 A1A4K sing 48 n n C01 H2 A1A4K sing 49 n n C02 H3 A1A4K sing 50 n n C02 H4 A1A4K sing 51 n n C03 H5 A1A4K sing 52 n n C03 H6 A1A4K sing 53 n n C06 H7 A1A4K sing 54 n n C08 H8 A1A4K sing 55 n n C08 H9 A1A4K sing 56 n n C09 H10 A1A4K sing 57 n n C13 H11 A1A4K sing 58 n n C13 H12 A1A4K sing 59 n n C15 H13 A1A4K sing 60 n n C16 H14 A1A4K sing 61 n n C17 H15 A1A4K sing 62 n n C18 H16 A1A4K sing 63 n n C19 H17 A1A4K sing 64 n n C20 H18 A1A4K sing 65 n n C20 H19 A1A4K sing 66 n n C22 H20 A1A4K sing 67 n n C25 H21 A1A4K sing 68 n n C26 H22 A1A4K sing 69 n n C30 H23 A1A4K sing 70 n n C31 H24 A1A4K sing 71 n n C32 H25 A1A4K sing 72 n n C34 H26 A1A4K sing 73 n n C35 H27 A1A4K sing 74 n n C37 H28 A1A4K sing 75 n n C38 H29 A1A4K sing 76 n n C39 H30 A1A4K sing 77 n n C40 H31 A1A4K sing 78 n n C41 H32 A1A4K sing 79 n n C42 H33 A1A4K sing 80 n n C43 H34 A1A4K sing 81 n n N04 H35 A1A4K sing 82 n n N10 H36 A1A4K sing 83 n n # _atom_sites.entry_id 9COX _atom_sites.fract_transf_matrix[1][1] 0.013228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 A1A4K A 1 602 700 A1A4K 132 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A1A4K . . . C 3 -20.337 -22.649 -6.339 1 108.6 ? C01 A1A4K 602 A 1 HETATM 2 C C02 A1A4K . . . C 3 -20.218 -21.359 -5.502 1 99.03 ? C02 A1A4K 602 A 1 HETATM 3 C C03 A1A4K . . . C 3 -20.263 -20.06 -6.334 1 95.8 ? C03 A1A4K 602 A 1 HETATM 4 C C05 A1A4K . . . C 3 -21.625 -18.651 -4.672 1 111.27 ? C05 A1A4K 602 A 1 HETATM 5 C C06 A1A4K . . . C 3 -22.85 -17.786 -4.308 1 119.76 ? C06 A1A4K 602 A 1 HETATM 6 C C08 A1A4K . . . C 3 -24.43 -16.688 -6.601 1 125.85 ? C08 A1A4K 602 A 1 HETATM 7 C C09 A1A4K . . . C 3 -23.823 -17.449 -7.789 1 117.5 ? C09 A1A4K 602 A 1 HETATM 8 C C11 A1A4K . . . C 3 -24.469 -19.776 -8.301 1 121.96 ? C11 A1A4K 602 A 1 HETATM 9 C C13 A1A4K . . . C 3 -24.123 -18.658 -4.23 1 119.6 ? C13 A1A4K 602 A 1 HETATM 10 C C14 A1A4K . . . C 3 -24.927 -18.246 -2.986 1 136.57 ? C14 A1A4K 602 A 1 HETATM 11 C C15 A1A4K . . . C 3 -25.017 -17.793 -0.609 1 142.55 ? C15 A1A4K 602 A 1 HETATM 12 C C16 A1A4K . . . C 3 -26.373 -17.466 -0.718 1 143.56 ? C16 A1A4K 602 A 1 HETATM 13 C C17 A1A4K . . . C 3 -27 -17.528 -1.967 1 136 ? C17 A1A4K 602 A 1 HETATM 14 C C18 A1A4K . . . C 3 -26.28 -17.914 -3.102 1 141.01 ? C18 A1A4K 602 A 1 HETATM 15 C C19 A1A4K . . . C 3 -24.292 -18.181 -1.741 1 133.86 ? C19 A1A4K 602 A 1 HETATM 16 C C20 A1A4K . . . C 3 -23.218 -16.501 -8.849 1 106.14 ? C20 A1A4K 602 A 1 HETATM 17 C C21 A1A4K . . . C 3 -22.238 -17.301 -9.729 1 102.22 ? C21 A1A4K 602 A 1 HETATM 18 C C22 A1A4K . . . C 3 -22.763 -18.019 -10.809 1 119.02 ? C22 A1A4K 602 A 1 HETATM 19 C C23 A1A4K . . . C 3 -20.857 -17.347 -9.456 1 98.77 ? C23 A1A4K 602 A 1 HETATM 20 C C24 A1A4K . . . C 3 -20.019 -18.103 -10.282 1 87.11 ? C24 A1A4K 602 A 1 HETATM 21 C C25 A1A4K . . . C 3 -20.548 -18.812 -11.363 1 97.96 ? C25 A1A4K 602 A 1 HETATM 22 C C26 A1A4K . . . C 3 -21.918 -18.772 -11.627 1 111.48 ? C26 A1A4K 602 A 1 HETATM 23 C C28 A1A4K . . . C 3 -25.286 -20.926 -8.88 1 124.05 ? C28 A1A4K 602 A 1 HETATM 24 C C29 A1A4K . . . C 3 -19.672 -22.576 -7.728 1 102.04 ? C29 A1A4K 602 A 1 HETATM 25 C C30 A1A4K . . . C 3 -20.481 -22.447 -8.864 1 107.85 ? C30 A1A4K 602 A 1 HETATM 26 C C31 A1A4K . . . C 3 -19.857 -22.385 -10.115 1 106.08 ? C31 A1A4K 602 A 1 HETATM 27 C C32 A1A4K . . . C 3 -18.462 -22.459 -10.193 1 97.8 ? C32 A1A4K 602 A 1 HETATM 28 C C34 A1A4K . . . C 3 -18.278 -22.649 -7.863 1 92.54 ? C34 A1A4K 602 A 1 HETATM 29 C C35 A1A4K . . . C 3 -26.043 -21.713 -8.018 1 127.02 ? C35 A1A4K 602 A 1 HETATM 30 C C37 A1A4K . . . C 3 -26.725 -23.066 -9.797 1 136.33 ? C37 A1A4K 602 A 1 HETATM 31 C C38 A1A4K . . . C 3 -25.965 -22.319 -10.701 1 135.96 ? C38 A1A4K 602 A 1 HETATM 32 C C39 A1A4K . . . C 3 -25.22 -21.231 -10.24 1 131.46 ? C39 A1A4K 602 A 1 HETATM 33 C C40 A1A4K . . . C 3 -20.294 -16.644 -8.376 1 104.83 ? C40 A1A4K 602 A 1 HETATM 34 C C41 A1A4K . . . C 3 -18.913 -16.7 -8.129 1 96.22 ? C41 A1A4K 602 A 1 HETATM 35 C C42 A1A4K . . . C 3 -18.083 -17.459 -8.961 1 85.1 ? C42 A1A4K 602 A 1 HETATM 36 C C43 A1A4K . . . C 3 -18.642 -18.158 -10.036 1 91.4 ? C43 A1A4K 602 A 1 HETATM 37 N N04 A1A4K . . . C 3 -21.445 -19.236 -6.014 1 100.06 ? N04 A1A4K 602 A 1 HETATM 38 N N10 A1A4K . . . C 3 -24.793 -18.358 -8.427 1 120.21 ? N10 A1A4K 602 A 1 HETATM 39 N N33 A1A4K . . . C 3 -17.723 -22.588 -9.083 1 93.99 ? N33 A1A4K 602 A 1 HETATM 40 N N36 A1A4K . . . C 3 -26.74 -22.742 -8.499 1 134.62 ? N36 A1A4K 602 A 1 HETATM 41 O O12 A1A4K . . . C 3 -20.814 -18.839 -3.812 1 117.93 ? O12 A1A4K 602 A 1 HETATM 42 O O27 A1A4K . . . C 3 -23.482 -20.07 -7.709 1 116.79 ? O27 A1A4K 602 A 1 HETATM 43 S S07 A1A4K . . . C 3 -23.034 -16.394 -5.478 1 144.88 ? S07 A1A4K 602 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #