data_9COY
#
_model_server_result.job_id            dbS7f04RYDUp8Wbycq-HRQ 
_model_server_result.datetime_utc      '2025-01-09 22:15:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9coy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    9COY 
#
_exptl.entry_id    9COY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9COY 
_cell.length_a            77.89 
_cell.length_b            100.69 
_cell.length_c            130.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9COY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N24 A1A4T . A A1A4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 218 n n 
CHA C4D HEM doub 219 n n 
CHA HHA HEM sing 220 n n 
CHB C4A HEM sing 221 n n 
CHB C1B HEM doub 222 n n 
CHB HHB HEM sing 223 n n 
CHC C4B HEM sing 224 n n 
CHC C1C HEM doub 225 n n 
CHC HHC HEM sing 226 n n 
CHD C4C HEM doub 227 n n 
CHD C1D HEM sing 228 n n 
CHD HHD HEM sing 229 n n 
C1A C2A HEM doub 230 n y 
C1A NA HEM sing 231 n y 
C2A C3A HEM sing 232 n y 
C2A CAA HEM sing 233 n n 
C3A C4A HEM doub 234 n y 
C3A CMA HEM sing 235 n n 
C4A NA HEM sing 236 n y 
CMA HMA HEM sing 237 n n 
CMA HMAA HEM sing 238 n n 
CMA HMAB HEM sing 239 n n 
CAA CBA HEM sing 240 n n 
CAA HAA HEM sing 241 n n 
CAA HAAA HEM sing 242 n n 
CBA CGA HEM sing 243 n n 
CBA HBA HEM sing 244 n n 
CBA HBAA HEM sing 245 n n 
CGA O1A HEM doub 246 n n 
CGA O2A HEM sing 247 n n 
C1B C2B HEM sing 248 n n 
C1B NB HEM sing 249 n n 
C2B C3B HEM doub 250 n n 
C2B CMB HEM sing 251 n n 
C3B C4B HEM sing 252 n n 
C3B CAB HEM sing 253 n n 
C4B NB HEM doub 254 n n 
CMB HMB HEM sing 255 n n 
CMB HMBA HEM sing 256 n n 
CMB HMBB HEM sing 257 n n 
CAB CBB HEM doub 258 n n 
CAB HAB HEM sing 259 n n 
CBB HBB HEM sing 260 n n 
CBB HBBA HEM sing 261 n n 
C1C C2C HEM sing 262 n y 
C1C NC HEM sing 263 n y 
C2C C3C HEM doub 264 n y 
C2C CMC HEM sing 265 n n 
C3C C4C HEM sing 266 n y 
C3C CAC HEM sing 267 n n 
C4C NC HEM sing 268 n y 
CMC HMC HEM sing 269 n n 
CMC HMCA HEM sing 270 n n 
CMC HMCB HEM sing 271 n n 
CAC CBC HEM doub 272 n n 
CAC HAC HEM sing 273 n n 
CBC HBC HEM sing 274 n n 
CBC HBCA HEM sing 275 n n 
C1D C2D HEM sing 276 n n 
C1D ND HEM doub 277 n n 
C2D C3D HEM doub 278 n n 
C2D CMD HEM sing 279 n n 
C3D C4D HEM sing 280 n n 
C3D CAD HEM sing 281 n n 
C4D ND HEM sing 282 n n 
CMD HMD HEM sing 283 n n 
CMD HMDA HEM sing 284 n n 
CMD HMDB HEM sing 285 n n 
CAD CBD HEM sing 286 n n 
CAD HAD HEM sing 287 n n 
CAD HADA HEM sing 288 n n 
CBD CGD HEM sing 289 n n 
CBD HBD HEM sing 290 n n 
CBD HBDA HEM sing 291 n n 
CGD O1D HEM doub 292 n n 
CGD O2D HEM sing 293 n n 
O2A H2A HEM sing 294 n n 
O2D H2D HEM sing 295 n n 
FE NA HEM sing 296 n n 
FE NB HEM sing 297 n n 
FE NC HEM sing 298 n n 
FE ND HEM sing 299 n n 
#
_atom_sites.entry_id                     9COY 
_atom_sites.fract_transf_matrix[1][1]    0.012839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 A1A4T A 1 602 700 A1A4T 564 . 
D 4 HOH A 1 701 7 HOH HOH . 
D 4 HOH A 2 702 16 HOH HOH . 
D 4 HOH A 3 703 11 HOH HOH . 
D 4 HOH A 4 704 1 HOH HOH . 
D 4 HOH A 5 705 5 HOH HOH . 
D 4 HOH A 6 706 6 HOH HOH . 
D 4 HOH A 7 707 4 HOH HOH . 
D 4 HOH A 8 708 14 HOH HOH . 
D 4 HOH A 9 709 2 HOH HOH . 
D 4 HOH A 10 710 15 HOH HOH . 
D 4 HOH A 11 711 13 HOH HOH . 
D 4 HOH A 12 712 12 HOH HOH . 
D 4 HOH A 13 713 3 HOH HOH . 
D 4 HOH A 14 714 10 HOH HOH . 
D 4 HOH A 15 715 8 HOH HOH . 
D 4 HOH A 16 716 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.242 -19.952 -10.232 1 81.81 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -15.941 -22.619 -14.225 1 83.45 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.422 -26.611 -11.519 1 85.21 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.407 -24.006 -7.563 1 81.5 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.389 -20.32 -11.551 1 81.32 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.304 -19.442 -12.7 1 82.11 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.5 -20.182 -13.793 1 80.02 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.71 -21.555 -13.383 1 77.16 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.495 -19.674 -15.25 1 78.17 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.044 -17.918 -12.667 1 75.65 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.59 -17.636 -13.031 1 78.18 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.335 -16.151 -13.124 1 77.05 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -12.25 -15.766 -13.626 1 69.86 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -14.203 -15.344 -12.703 1 79.01 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.121 -23.931 -13.847 1 81.41 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.332 -25.05 -14.744 1 81.76 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.463 -26.16 -13.994 1 83.41 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.344 -25.766 -12.605 1 81.1 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.374 -24.908 -16.284 1 77.24 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -16.705 -27.632 -14.421 1 85.26 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.886 -28.047 -15.68 1 83.91 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.118 -26.276 -10.218 1 84.07 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -15.933 -27.195 -9.114 1 86.69 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.648 -26.49 -8.017 1 88.07 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.647 -25.083 -8.386 1 84.05 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.038 -28.733 -9.185 1 92.15 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.386 -27.13 -6.631 1 88.45 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.055 -26.423 -5.546 1 94.33 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.342 -22.683 -7.935 1 81.65 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.258 -21.557 -7.032 1 84.47 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -15.221 -20.442 -7.763 1 84.37 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.264 -20.816 -9.159 1 80.78 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -15.236 -21.648 -5.492 1 84.96 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -15.11 -19.001 -7.231 1 84.11 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.649 -18.828 -6.826 1 84.22 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -13.293 -17.386 -6.599 1 85.43 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -12.237 -17.148 -5.957 1 82.68 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -14.054 -16.49 -7.051 1 84.6 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.632 -21.603 -12.006 1 77.11 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.135 -24.402 -12.552 1 80.31 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -15.937 -24.995 -9.735 1 85.23 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.341 -22.194 -9.226 1 81.71 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.688 -23.289 -10.878 1 70.07 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#