data_9COY
#
_model_server_result.job_id            jjQljeYqA1PDfY883YPBHw 
_model_server_result.datetime_utc      '2025-01-09 21:41:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9coy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    9COY 
#
_exptl.entry_id    9COY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              593.821 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[(2S)-1-([1,1'-biphenyl]-4-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]-2,2-dimethylpropanamide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9COY 
_cell.length_a            77.89 
_cell.length_b            100.69 
_cell.length_c            130.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9COY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N24 A1A4T . A A1A4T 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
#
_chem_comp.formula           'C37 H43 N3 O2 S' 
_chem_comp.formula_weight    593.821 
_chem_comp.id                A1A4T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[(2S)-1-([1,1'-biphenyl]-4-yl)-3-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}propan-2-yl]-2,2-dimethylpropanamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C41 C42 A1A4T doub 1 n y 
C41 C40 A1A4T sing 2 n y 
C42 C43 A1A4T sing 3 n y 
C40 C39 A1A4T doub 4 n y 
C31 C22 A1A4T sing 5 n n 
C43 C38 A1A4T doub 6 n y 
C39 C38 A1A4T sing 7 n y 
C38 C19 A1A4T sing 8 n n 
C19 C18 A1A4T doub 9 n y 
C19 C20 A1A4T sing 10 n y 
C28 C27 A1A4T doub 11 n y 
C28 N24 A1A4T sing 12 n y 
C27 C26 A1A4T sing 13 n y 
C18 C17 A1A4T sing 14 n y 
C22 C29 A1A4T sing 15 n n 
C22 C30 A1A4T sing 16 n n 
C22 C11 A1A4T sing 17 n n 
C20 C16 A1A4T doub 18 n y 
C17 C15 A1A4T doub 19 n y 
C16 C15 A1A4T sing 20 n y 
C11 N10 A1A4T sing 21 n n 
C11 O21 A1A4T doub 22 n n 
C15 C14 A1A4T sing 23 n n 
N10 C09 A1A4T sing 24 n n 
N24 C25 A1A4T doub 25 n y 
C26 C23 A1A4T doub 26 n y 
C14 C09 A1A4T sing 27 n n 
C09 C08 A1A4T sing 28 n n 
C25 C23 A1A4T sing 29 n y 
C23 C01 A1A4T sing 30 n n 
C08 S07 A1A4T sing 31 n n 
N04 C03 A1A4T sing 32 n n 
N04 C05 A1A4T sing 33 n n 
C01 C02 A1A4T sing 34 n n 
C03 C02 A1A4T sing 35 n n 
S07 C06 A1A4T sing 36 n n 
C06 C05 A1A4T sing 37 n n 
C06 C13 A1A4T sing 38 n n 
C05 O12 A1A4T doub 39 n n 
C34 C35 A1A4T doub 40 n y 
C34 C32 A1A4T sing 41 n y 
C13 C32 A1A4T sing 42 n n 
C35 C36 A1A4T sing 43 n y 
C32 C33 A1A4T doub 44 n y 
C36 C37 A1A4T doub 45 n y 
C33 C37 A1A4T sing 46 n y 
C16 H1 A1A4T sing 47 n n 
C17 H2 A1A4T sing 48 n n 
C18 H3 A1A4T sing 49 n n 
C20 H4 A1A4T sing 50 n n 
C25 H5 A1A4T sing 51 n n 
C26 H6 A1A4T sing 52 n n 
C13 H7 A1A4T sing 53 n n 
C13 H8 A1A4T sing 54 n n 
C14 H9 A1A4T sing 55 n n 
C14 H10 A1A4T sing 56 n n 
C01 H11 A1A4T sing 57 n n 
C01 H12 A1A4T sing 58 n n 
C02 H13 A1A4T sing 59 n n 
C02 H14 A1A4T sing 60 n n 
C03 H15 A1A4T sing 61 n n 
C03 H16 A1A4T sing 62 n n 
C06 H17 A1A4T sing 63 n n 
C08 H18 A1A4T sing 64 n n 
C08 H19 A1A4T sing 65 n n 
C09 H20 A1A4T sing 66 n n 
C27 H21 A1A4T sing 67 n n 
C28 H22 A1A4T sing 68 n n 
C29 H23 A1A4T sing 69 n n 
C29 H24 A1A4T sing 70 n n 
C29 H25 A1A4T sing 71 n n 
C30 H26 A1A4T sing 72 n n 
C30 H27 A1A4T sing 73 n n 
C30 H28 A1A4T sing 74 n n 
C31 H29 A1A4T sing 75 n n 
C31 H30 A1A4T sing 76 n n 
C31 H31 A1A4T sing 77 n n 
C33 H32 A1A4T sing 78 n n 
C34 H33 A1A4T sing 79 n n 
C35 H34 A1A4T sing 80 n n 
C36 H35 A1A4T sing 81 n n 
C37 H36 A1A4T sing 82 n n 
C39 H37 A1A4T sing 83 n n 
C40 H38 A1A4T sing 84 n n 
C41 H39 A1A4T sing 85 n n 
C42 H40 A1A4T sing 86 n n 
C43 H41 A1A4T sing 87 n n 
N04 H42 A1A4T sing 88 n n 
N10 H43 A1A4T sing 89 n n 
#
_atom_sites.entry_id                     9COY 
_atom_sites.fract_transf_matrix[1][1]    0.012839 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 A1A4T A 1 602 700 A1A4T 564 . 
D 4 HOH A 1 701 7 HOH HOH . 
D 4 HOH A 2 702 16 HOH HOH . 
D 4 HOH A 3 703 11 HOH HOH . 
D 4 HOH A 4 704 1 HOH HOH . 
D 4 HOH A 5 705 5 HOH HOH . 
D 4 HOH A 6 706 6 HOH HOH . 
D 4 HOH A 7 707 4 HOH HOH . 
D 4 HOH A 8 708 14 HOH HOH . 
D 4 HOH A 9 709 2 HOH HOH . 
D 4 HOH A 10 710 15 HOH HOH . 
D 4 HOH A 11 711 13 HOH HOH . 
D 4 HOH A 12 712 12 HOH HOH . 
D 4 HOH A 13 713 3 HOH HOH . 
D 4 HOH A 14 714 10 HOH HOH . 
D 4 HOH A 15 715 8 HOH HOH . 
D 4 HOH A 16 716 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 A1A4T . . . C 3 -20.408 -17.03 -10.828 1 121.46 ? C11 A1A4T 602 A 1 
HETATM 2 C C15 A1A4T . . . C 3 -24.456 -14.836 -10.769 1 149.46 ? C15 A1A4T 602 A 1 
HETATM 3 C C16 A1A4T . . . C 3 -25.42 -13.843 -11.012 1 145.34 ? C16 A1A4T 602 A 1 
HETATM 4 C C17 A1A4T . . . C 3 -24.777 -16.17 -11.095 1 150.77 ? C17 A1A4T 602 A 1 
HETATM 5 C C18 A1A4T . . . C 3 -26.036 -16.481 -11.654 1 155.13 ? C18 A1A4T 602 A 1 
HETATM 6 C C19 A1A4T . . . C 3 -26.985 -15.472 -11.893 1 150.67 ? C19 A1A4T 602 A 1 
HETATM 7 C C20 A1A4T . . . C 3 -26.673 -14.147 -11.566 1 145.73 ? C20 A1A4T 602 A 1 
HETATM 8 C C23 A1A4T . . . C 3 -19.782 -22.689 -9.381 1 94.35 ? C23 A1A4T 602 A 1 
HETATM 9 C C25 A1A4T . . . C 3 -18.398 -22.888 -9.485 1 88.19 ? C25 A1A4T 602 A 1 
HETATM 10 C C26 A1A4T . . . C 3 -20.532 -22.467 -10.544 1 98.54 ? C26 A1A4T 602 A 1 
HETATM 11 C C13 A1A4T . . . C 3 -24.254 -18.347 -6.34 1 130.86 ? C13 A1A4T 602 A 1 
HETATM 12 C C14 A1A4T . . . C 3 -23.119 -14.339 -10.145 1 143.43 ? C14 A1A4T 602 A 1 
HETATM 13 C C22 A1A4T . . . C 3 -20.16 -18.318 -11.636 1 116.57 ? C22 A1A4T 602 A 1 
HETATM 14 C C01 A1A4T . . . C 3 -20.479 -22.72 -8.006 1 103.9 ? C01 A1A4T 602 A 1 
HETATM 15 C C02 A1A4T . . . C 3 -20.177 -21.487 -7.128 1 105.81 ? C02 A1A4T 602 A 1 
HETATM 16 C C03 A1A4T . . . C 3 -19.984 -20.183 -7.923 1 106.5 ? C03 A1A4T 602 A 1 
HETATM 17 C C05 A1A4T . . . C 3 -21.916 -18.676 -7.215 1 120.26 ? C05 A1A4T 602 A 1 
HETATM 18 C C06 A1A4T . . . C 3 -23.298 -18.059 -7.51 1 131.08 ? C06 A1A4T 602 A 1 
HETATM 19 C C08 A1A4T . . . C 3 -21.718 -15.603 -8.377 1 129.15 ? C08 A1A4T 602 A 1 
HETATM 20 C C09 A1A4T . . . C 3 -21.874 -15.232 -9.876 1 134.67 ? C09 A1A4T 602 A 1 
HETATM 21 C C27 A1A4T . . . C 3 -19.862 -22.445 -11.775 1 92.48 ? C27 A1A4T 602 A 1 
HETATM 22 C C28 A1A4T . . . C 3 -18.477 -22.648 -11.8 1 89.18 ? C28 A1A4T 602 A 1 
HETATM 23 C C29 A1A4T . . . C 3 -21.394 -19.23 -11.521 1 117.48 ? C29 A1A4T 602 A 1 
HETATM 24 C C30 A1A4T . . . C 3 -18.911 -19.049 -11.104 1 100.41 ? C30 A1A4T 602 A 1 
HETATM 25 C C31 A1A4T . . . C 3 -19.914 -17.944 -13.103 1 110.69 ? C31 A1A4T 602 A 1 
HETATM 26 C C32 A1A4T . . . C 3 -24.587 -19.822 -6.072 1 130.43 ? C32 A1A4T 602 A 1 
HETATM 27 C C33 A1A4T . . . C 3 -23.717 -20.606 -5.308 1 124.07 ? C33 A1A4T 602 A 1 
HETATM 28 C C34 A1A4T . . . C 3 -25.778 -20.354 -6.574 1 138.21 ? C34 A1A4T 602 A 1 
HETATM 29 C C35 A1A4T . . . C 3 -26.095 -21.69 -6.322 1 137.14 ? C35 A1A4T 602 A 1 
HETATM 30 C C36 A1A4T . . . C 3 -25.223 -22.473 -5.56 1 129.76 ? C36 A1A4T 602 A 1 
HETATM 31 C C37 A1A4T . . . C 3 -24.031 -21.943 -5.056 1 125.29 ? C37 A1A4T 602 A 1 
HETATM 32 C C38 A1A4T . . . C 3 -28.371 -15.799 -12.498 1 149.12 ? C38 A1A4T 602 A 1 
HETATM 33 C C39 A1A4T . . . C 3 -29.291 -14.763 -12.714 1 143.6 ? C39 A1A4T 602 A 1 
HETATM 34 C C40 A1A4T . . . C 3 -30.554 -15.036 -13.258 1 141.13 ? C40 A1A4T 602 A 1 
HETATM 35 C C41 A1A4T . . . C 3 -30.902 -16.352 -13.588 1 141.66 ? C41 A1A4T 602 A 1 
HETATM 36 C C42 A1A4T . . . C 3 -29.988 -17.392 -13.373 1 144.85 ? C42 A1A4T 602 A 1 
HETATM 37 C C43 A1A4T . . . C 3 -28.725 -17.117 -12.829 1 146.24 ? C43 A1A4T 602 A 1 
HETATM 38 N N04 A1A4T . . . C 3 -21.296 -19.581 -8.197 1 114.67 ? N04 A1A4T 602 A 1 
HETATM 39 N N10 A1A4T . . . C 3 -21.761 -16.455 -10.689 1 127.69 ? N10 A1A4T 602 A 1 
HETATM 40 N N24 A1A4T . . . C 3 -17.783 -22.862 -10.675 1 88.46 ? N24 A1A4T 602 A 1 
HETATM 41 O O12 A1A4T . . . C 3 -21.35 -18.431 -6.183 1 115.06 ? O12 A1A4T 602 A 1 
HETATM 42 O O21 A1A4T . . . C 3 -19.471 -16.486 -10.311 1 112.28 ? O21 A1A4T 602 A 1 
HETATM 43 S S07 A1A4T . . . C 3 -23.251 -16.241 -7.646 1 136.37 ? S07 A1A4T 602 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#