data_9CS1 # _model_server_result.job_id qQ-rZKdTekl13jVk8THIOg _model_server_result.datetime_utc '2025-07-05 09:17:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cs1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 9CS1 # _exptl.entry_id 9CS1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.431 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description tetrabutylphosphonium _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CS1 _cell.length_a 58.602 _cell.length_b 82.625 _cell.length_c 127.889 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CS1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C1 R3W 1 C R3W 1 1_555 B N PHE 2 C PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 B C2 R3W 1 C R3W 1 1_555 B SG CYS 15 C CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale3 B C TRP 6 C TRP 6 1_555 B N DI8 7 C DI8 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale4 B C DI8 7 C DI8 7 1_555 B N TRP 8 C TRP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 B C GLY 16 C GLY 16 1_555 B N NH2 17 C NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 C CZ2 TRP 1 D TRP 1 1_555 C O9 UX8 3 D UX8 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale7 C C ASN 2 D ASN 2 1_555 C N UX8 3 D UX8 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale8 C C UX8 3 D UX8 3 1_555 C N SER 4 D SER 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale9 C CH2 UX8 3 D UX8 3 1_555 C CB LYS 5 D LYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C16 H36 P 1' _chem_comp.formula_weight 259.431 _chem_comp.id 4NE _chem_comp.mon_nstd_flag . _chem_comp.name tetrabutylphosphonium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 P01 4NE sing 1 n n C10 C11 4NE sing 2 n n C13 C12 4NE sing 3 n n C15 C14 4NE sing 4 n n C15 C16 4NE sing 5 n n C17 C16 4NE sing 6 n n P01 C02 4NE sing 7 n n P01 C06 4NE sing 8 n n P01 C14 4NE sing 9 n n C02 C03 4NE sing 10 n n C03 C04 4NE sing 11 n n C04 C05 4NE sing 12 n n C06 C07 4NE sing 13 n n C07 C08 4NE sing 14 n n C08 C09 4NE sing 15 n n C11 C12 4NE sing 16 n n C10 H10 4NE sing 17 n n C10 H10A 4NE sing 18 n n C13 H13 4NE sing 19 n n C13 H13A 4NE sing 20 n n C13 H13B 4NE sing 21 n n C15 H15 4NE sing 22 n n C15 H15A 4NE sing 23 n n C17 H17 4NE sing 24 n n C17 H17A 4NE sing 25 n n C17 H17B 4NE sing 26 n n C02 H02 4NE sing 27 n n C02 H02A 4NE sing 28 n n C03 H03 4NE sing 29 n n C03 H03A 4NE sing 30 n n C04 H04 4NE sing 31 n n C04 H04A 4NE sing 32 n n C05 H05 4NE sing 33 n n C05 H05A 4NE sing 34 n n C05 H05B 4NE sing 35 n n C06 H06 4NE sing 36 n n C06 H06A 4NE sing 37 n n C07 H07 4NE sing 38 n n C07 H07A 4NE sing 39 n n C08 H08 4NE sing 40 n n C08 H08A 4NE sing 41 n n C09 H09 4NE sing 42 n n C09 H09A 4NE sing 43 n n C09 H09B 4NE sing 44 n n C11 H11 4NE sing 45 n n C11 H11A 4NE sing 46 n n C12 H12 4NE sing 47 n n C12 H12A 4NE sing 48 n n C14 H14 4NE sing 49 n n C14 H14A 4NE sing 50 n n C16 H16 4NE sing 51 n n C16 H16A 4NE sing 52 n n # _atom_sites.entry_id 9CS1 _atom_sites.fract_transf_matrix[1][1] 0.017064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 4NE A 1 901 1 4NE TBP . E 4 4NE A 1 902 2 4NE TBP . F 5 HOH A 1 1001 1 HOH HOH . F 5 HOH A 2 1002 27 HOH HOH . F 5 HOH A 3 1003 42 HOH HOH . F 5 HOH A 4 1004 31 HOH HOH . F 5 HOH A 5 1005 20 HOH HOH . F 5 HOH A 6 1006 54 HOH HOH . F 5 HOH A 7 1007 28 HOH HOH . F 5 HOH A 8 1008 66 HOH HOH . F 5 HOH A 9 1009 37 HOH HOH . F 5 HOH A 10 1010 25 HOH HOH . F 5 HOH A 11 1011 43 HOH HOH . F 5 HOH A 12 1012 65 HOH HOH . F 5 HOH A 13 1013 38 HOH HOH . F 5 HOH A 14 1014 23 HOH HOH . F 5 HOH A 15 1015 13 HOH HOH . F 5 HOH A 16 1016 56 HOH HOH . F 5 HOH A 17 1017 8 HOH HOH . F 5 HOH A 18 1018 5 HOH HOH . F 5 HOH A 19 1019 69 HOH HOH . F 5 HOH A 20 1020 2 HOH HOH . F 5 HOH A 21 1021 49 HOH HOH . F 5 HOH A 22 1022 9 HOH HOH . F 5 HOH A 23 1023 22 HOH HOH . F 5 HOH A 24 1024 44 HOH HOH . F 5 HOH A 25 1025 48 HOH HOH . F 5 HOH A 26 1026 19 HOH HOH . F 5 HOH A 27 1027 26 HOH HOH . F 5 HOH A 28 1028 68 HOH HOH . F 5 HOH A 29 1029 11 HOH HOH . F 5 HOH A 30 1030 36 HOH HOH . F 5 HOH A 31 1031 60 HOH HOH . F 5 HOH A 32 1032 41 HOH HOH . F 5 HOH A 33 1033 64 HOH HOH . F 5 HOH A 34 1034 7 HOH HOH . F 5 HOH A 35 1035 34 HOH HOH . F 5 HOH A 36 1036 58 HOH HOH . F 5 HOH A 37 1037 57 HOH HOH . F 5 HOH A 38 1038 40 HOH HOH . F 5 HOH A 39 1039 32 HOH HOH . F 5 HOH A 40 1040 12 HOH HOH . F 5 HOH A 41 1041 35 HOH HOH . F 5 HOH A 42 1042 18 HOH HOH . F 5 HOH A 43 1043 55 HOH HOH . F 5 HOH A 44 1044 33 HOH HOH . F 5 HOH A 45 1045 61 HOH HOH . F 5 HOH A 46 1046 39 HOH HOH . F 5 HOH A 47 1047 50 HOH HOH . F 5 HOH A 48 1048 21 HOH HOH . F 5 HOH A 49 1049 51 HOH HOH . F 5 HOH A 50 1050 47 HOH HOH . F 5 HOH A 51 1051 3 HOH HOH . F 5 HOH A 52 1052 17 HOH HOH . F 5 HOH A 53 1053 46 HOH HOH . F 5 HOH A 54 1054 6 HOH HOH . F 5 HOH A 55 1055 30 HOH HOH . F 5 HOH A 56 1056 67 HOH HOH . F 5 HOH A 57 1057 70 HOH HOH . F 5 HOH A 58 1058 29 HOH HOH . F 5 HOH A 59 1059 45 HOH HOH . G 5 HOH C 1 101 10 HOH HOH . G 5 HOH C 2 102 59 HOH HOH . G 5 HOH C 3 103 16 HOH HOH . G 5 HOH C 4 104 24 HOH HOH . G 5 HOH C 5 105 53 HOH HOH . G 5 HOH C 6 106 52 HOH HOH . G 5 HOH C 7 107 63 HOH HOH . G 5 HOH C 8 108 15 HOH HOH . G 5 HOH C 9 109 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 4NE . . . D 4 -34.555 -24.504 -33.482 1 57.62 ? C10 4NE 901 A 1 HETATM 2 C C13 4NE . . . D 4 -36.599 -24.642 -36.013 1 56.65 ? C13 4NE 901 A 1 HETATM 3 C C15 4NE . . . D 4 -33.235 -22.441 -30.87 1 58.29 ? C15 4NE 901 A 1 HETATM 4 C C17 4NE . . . D 4 -32.3 -20.239 -30.072 1 58.59 ? C17 4NE 901 A 1 HETATM 5 P P01 4NE . . . D 4 -34.297 -24.908 -31.746 1 57.98 1 P01 4NE 901 A 1 HETATM 6 C C02 4NE . . . D 4 -35.712 -25.874 -31.174 1 57.96 ? C02 4NE 901 A 1 HETATM 7 C C03 4NE . . . D 4 -35.58 -27.401 -31.199 1 58.01 ? C03 4NE 901 A 1 HETATM 8 C C04 4NE . . . D 4 -36.842 -28.056 -30.72 1 57.92 ? C04 4NE 901 A 1 HETATM 9 C C05 4NE . . . D 4 -36.766 -29.525 -30.74 1 57.94 ? C05 4NE 901 A 1 HETATM 10 C C06 4NE . . . D 4 -32.724 -25.731 -31.494 1 57.89 ? C06 4NE 901 A 1 HETATM 11 C C07 4NE . . . D 4 -32.451 -26.224 -30.067 1 57.98 ? C07 4NE 901 A 1 HETATM 12 C C08 4NE . . . D 4 -31.085 -26.885 -29.91 1 58.12 ? C08 4NE 901 A 1 HETATM 13 C C09 4NE . . . D 4 -30.866 -28.091 -30.801 1 58.38 ? C09 4NE 901 A 1 HETATM 14 C C11 4NE . . . D 4 -35.055 -25.65 -34.354 1 57.4 ? C11 4NE 901 A 1 HETATM 15 C C12 4NE . . . D 4 -35.267 -25.224 -35.793 1 56.91 ? C12 4NE 901 A 1 HETATM 16 C C14 4NE . . . D 4 -34.437 -23.372 -30.812 1 58.07 ? C14 4NE 901 A 1 HETATM 17 C C16 4NE . . . D 4 -33.481 -21.189 -30.054 1 58.42 ? C16 4NE 901 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 971 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 17 #