data_9CSI # _model_server_result.job_id bTrNNF-t0x519RvQkLPCvw _model_server_result.datetime_utc '2024-11-15 15:36:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9csi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9CSI # _exptl.entry_id 9CSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MONOVACCENIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CSI _cell.length_a 70.277 _cell.length_b 83.157 _cell.length_c 338.094 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 -83.157 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 398 A THR 375 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc2 B O3G ANP . A ANP 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc3 B O2B ANP . A ANP 601 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc4 D MG MG . A MG 603 1_555 F O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc5 D MG MG . A MG 603 1_555 F O HOH . A HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MVC _chem_comp.mon_nstd_flag . _chem_comp.name MONOVACCENIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '11.7 MAG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 MVC sing 386 n n C10 C11 MVC sing 387 n n C9 C8 MVC sing 388 n n C17 C16 MVC sing 389 n n C11 C12 MVC sing 390 n n C8 C7 MVC sing 391 n n C24 C22 MVC sing 392 n n C24 O25 MVC sing 393 n n C16 C15 MVC sing 394 n n C12 C13 MVC doub 395 z n C7 C6 MVC sing 396 n n C15 C14 MVC sing 397 n n C13 C14 MVC sing 398 n n C6 C5 MVC sing 399 n n C5 C4 MVC sing 400 n n C4 C3 MVC sing 401 n n C3 C1 MVC sing 402 n n C21 C22 MVC sing 403 n n C21 O20 MVC sing 404 n n C22 O23 MVC sing 405 n n O19 C1 MVC doub 406 n n O25 C1 MVC sing 407 n n C17 C18 MVC sing 408 n n C18 C19 MVC sing 409 n n C10 H101 MVC sing 410 n n C10 H102 MVC sing 411 n n C9 H91C MVC sing 412 n n C9 H92C MVC sing 413 n n C11 H111 MVC sing 414 n n C11 H112 MVC sing 415 n n C8 H81C MVC sing 416 n n C8 H82C MVC sing 417 n n C17 H171 MVC sing 418 n n C17 H172 MVC sing 419 n n C16 H161 MVC sing 420 n n C16 H162 MVC sing 421 n n C12 H12 MVC sing 422 n n C7 H71C MVC sing 423 n n C7 H72C MVC sing 424 n n C24 H241 MVC sing 425 n n C24 H242 MVC sing 426 n n C22 H22 MVC sing 427 n n C15 H151 MVC sing 428 n n C15 H152 MVC sing 429 n n C13 H13 MVC sing 430 n n C6 H61C MVC sing 431 n n C6 H62C MVC sing 432 n n C14 H141 MVC sing 433 n n C14 H142 MVC sing 434 n n C5 H51C MVC sing 435 n n C5 H52C MVC sing 436 n n C4 H41C MVC sing 437 n n C4 H42C MVC sing 438 n n C3 H31C MVC sing 439 n n C3 H32C MVC sing 440 n n C21 H211 MVC sing 441 n n C21 H212 MVC sing 442 n n O20 H20 MVC sing 443 n n O23 H23 MVC sing 444 n n C18 H181 MVC sing 445 n n C18 H182 MVC sing 446 n n C19 H191 MVC sing 447 n n C19 H192 MVC sing 448 n n C19 H193 MVC sing 449 n n # _atom_sites.entry_id 9CSI _atom_sites.fract_transf_matrix[1][1] 0.014229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 601 601 ANP ANP . C 3 MVC A 1 602 701 MVC MVC . D 4 MG A 1 603 1 MG MG . E 5 A1AZS A 1 604 1 A1AZS 871 . F 6 HOH A 1 701 43 HOH HOH . F 6 HOH A 2 702 50 HOH HOH . F 6 HOH A 3 703 3 HOH HOH . F 6 HOH A 4 704 25 HOH HOH . F 6 HOH A 5 705 12 HOH HOH . F 6 HOH A 6 706 28 HOH HOH . F 6 HOH A 7 707 34 HOH HOH . F 6 HOH A 8 708 56 HOH HOH . F 6 HOH A 9 709 36 HOH HOH . F 6 HOH A 10 710 6 HOH HOH . F 6 HOH A 11 711 55 HOH HOH . F 6 HOH A 12 712 20 HOH HOH . F 6 HOH A 13 713 18 HOH HOH . F 6 HOH A 14 714 31 HOH HOH . F 6 HOH A 15 715 26 HOH HOH . F 6 HOH A 16 716 58 HOH HOH . F 6 HOH A 17 717 14 HOH HOH . F 6 HOH A 18 718 54 HOH HOH . F 6 HOH A 19 719 65 HOH HOH . F 6 HOH A 20 720 53 HOH HOH . F 6 HOH A 21 721 24 HOH HOH . F 6 HOH A 22 722 51 HOH HOH . F 6 HOH A 23 723 2 HOH HOH . F 6 HOH A 24 724 57 HOH HOH . F 6 HOH A 25 725 5 HOH HOH . F 6 HOH A 26 726 10 HOH HOH . F 6 HOH A 27 727 32 HOH HOH . F 6 HOH A 28 728 42 HOH HOH . F 6 HOH A 29 729 45 HOH HOH . F 6 HOH A 30 730 21 HOH HOH . F 6 HOH A 31 731 46 HOH HOH . F 6 HOH A 32 732 9 HOH HOH . F 6 HOH A 33 733 22 HOH HOH . F 6 HOH A 34 734 39 HOH HOH . F 6 HOH A 35 735 44 HOH HOH . F 6 HOH A 36 736 11 HOH HOH . F 6 HOH A 37 737 33 HOH HOH . F 6 HOH A 38 738 15 HOH HOH . F 6 HOH A 39 739 59 HOH HOH . F 6 HOH A 40 740 35 HOH HOH . F 6 HOH A 41 741 64 HOH HOH . F 6 HOH A 42 742 62 HOH HOH . F 6 HOH A 43 743 63 HOH HOH . F 6 HOH A 44 744 27 HOH HOH . F 6 HOH A 45 745 61 HOH HOH . F 6 HOH A 46 746 30 HOH HOH . F 6 HOH A 47 747 7 HOH HOH . F 6 HOH A 48 748 19 HOH HOH . F 6 HOH A 49 749 1 HOH HOH . F 6 HOH A 50 750 29 HOH HOH . F 6 HOH A 51 751 52 HOH HOH . F 6 HOH A 52 752 23 HOH HOH . F 6 HOH A 53 753 8 HOH HOH . F 6 HOH A 54 754 4 HOH HOH . F 6 HOH A 55 755 49 HOH HOH . F 6 HOH A 56 756 38 HOH HOH . F 6 HOH A 57 757 13 HOH HOH . F 6 HOH A 58 758 40 HOH HOH . F 6 HOH A 59 759 47 HOH HOH . F 6 HOH A 60 760 17 HOH HOH . F 6 HOH A 61 761 41 HOH HOH . F 6 HOH A 62 762 37 HOH HOH . F 6 HOH A 63 763 16 HOH HOH . F 6 HOH A 64 764 60 HOH HOH . F 6 HOH A 65 765 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 MVC . . . C 3 -2.85 -40.279 -84.945 1 70.43 ? C9 MVC 602 A 1 HETATM 2 C C8 MVC . . . C 3 -2.804 -39.844 -83.697 1 67.67 ? C8 MVC 602 A 1 HETATM 3 C C10 MVC . . . C 3 -1.676 -40.726 -85.774 1 72.39 ? C10 MVC 602 A 1 HETATM 4 C C7 MVC . . . C 3 -3.969 -39.384 -82.872 1 64.4 ? C7 MVC 602 A 1 HETATM 5 C C24 MVC . . . C 3 -7.795 -35.534 -85.011 1 95.42 ? C24 MVC 602 A 1 HETATM 6 C C11 MVC . . . C 3 -1.768 -42.145 -86.332 1 72.17 ? C11 MVC 602 A 1 HETATM 7 C C6 MVC . . . C 3 -3.536 -38.568 -81.641 1 62.62 ? C6 MVC 602 A 1 HETATM 8 C C5 MVC . . . C 3 -4.646 -37.765 -80.968 1 60.41 ? C5 MVC 602 A 1 HETATM 9 C C4 MVC . . . C 3 -4.761 -36.339 -81.479 1 59.18 ? C4 MVC 602 A 1 HETATM 10 C C3 MVC . . . C 3 -6.166 -35.762 -81.534 1 57.96 ? C3 MVC 602 A 1 HETATM 11 C C21 MVC . . . C 3 -8.509 -34.787 -87.31 1 89.79 ? C21 MVC 602 A 1 HETATM 12 C C22 MVC . . . C 3 -8.847 -35.637 -86.096 1 93.2 ? C22 MVC 602 A 1 HETATM 13 O O19 MVC . . . C 3 -9.019 -34.962 -81.952 1 94.23 ? O19 MVC 602 A 1 HETATM 14 O O25 MVC . . . C 3 -8.042 -36.444 -83.943 1 95.21 ? O25 MVC 602 A 1 HETATM 15 O O23 MVC . . . C 3 -10.129 -35.277 -85.556 1 92.61 ? O23 MVC 602 A 1 HETATM 16 O O20 MVC . . . C 3 -8.906 -35.49 -88.514 1 86.79 ? O20 MVC 602 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #