data_9CSN
#
_model_server_result.job_id            CmH15VyiUSmaHKa893PDxA 
_model_server_result.datetime_utc      '2025-09-01 03:13:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9csn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    9CSN 
#
_exptl.entry_id    9CSN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.28 
_cell.angle_gamma         90 
_cell.entry_id            9CSN 
_cell.length_a            43.11 
_cell.length_b            48.17 
_cell.length_c            62.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CSN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,Q 1 1 
B,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 23 1_555 A SG CYS 82 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 38 A CYS 37 1_555 A SG CYS 92 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf3 A SG CYS 56 A CYS 55 1_555 A SG CYS 107 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
disulf ? disulf4 A SG CYS 63 A CYS 62 1_555 A SG CYS 70 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
disulf ? disulf5 B SG CYS 24 B CYS 23 1_555 B SG CYS 82 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf6 B SG CYS 38 B CYS 37 1_555 B SG CYS 92 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
disulf ? disulf7 B SG CYS 56 B CYS 55 1_555 B SG CYS 107 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf8 B SG CYS 63 B CYS 62 1_555 B SG CYS 70 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     9CSN 
_atom_sites.fract_transf_matrix[1][1]    0.023196 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002962 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02076 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BO3 A 1 401 401 BO3 BO3 . 
D 2 BO3 A 1 402 501 BO3 BO3 . 
E 2 BO3 A 1 403 601 BO3 BO3 . 
F 3 AMP A 1 404 701 AMP AMP . 
G 4 GOL A 1 405 801 GOL GOL . 
H 5 EDO A 1 406 901 EDO EDO . 
I 2 BO3 A 1 407 1201 BO3 BO3 . 
J 2 BO3 A 1 408 1301 BO3 BO3 . 
K 5 EDO A 1 409 1401 EDO EDO . 
L 5 EDO B 1 401 401 EDO EDO . 
M 5 EDO B 1 402 501 EDO EDO . 
N 5 EDO B 1 403 601 EDO EDO . 
O 2 BO3 B 1 404 901 BO3 BO3 . 
P 4 GOL B 1 405 1001 GOL GOL . 
Q 6 HOH A 1 501 20 HOH HOH . 
Q 6 HOH A 2 502 27 HOH HOH . 
Q 6 HOH A 3 503 9 HOH HOH . 
Q 6 HOH A 4 504 3 HOH HOH . 
Q 6 HOH A 5 505 128 HOH HOH . 
Q 6 HOH A 6 506 10 HOH HOH . 
Q 6 HOH A 7 507 7 HOH HOH . 
Q 6 HOH A 8 508 22 HOH HOH . 
Q 6 HOH A 9 509 131 HOH HOH . 
Q 6 HOH A 10 510 17 HOH HOH . 
Q 6 HOH A 11 511 13 HOH HOH . 
Q 6 HOH A 12 512 1 HOH HOH . 
Q 6 HOH A 13 513 8 HOH HOH . 
Q 6 HOH A 14 514 12 HOH HOH . 
Q 6 HOH A 15 515 69 HOH HOH . 
Q 6 HOH A 16 516 50 HOH HOH . 
Q 6 HOH A 17 517 129 HOH HOH . 
Q 6 HOH A 18 518 42 HOH HOH . 
Q 6 HOH A 19 519 24 HOH HOH . 
Q 6 HOH A 20 520 30 HOH HOH . 
Q 6 HOH A 21 521 49 HOH HOH . 
Q 6 HOH A 22 522 87 HOH HOH . 
Q 6 HOH A 23 523 118 HOH HOH . 
Q 6 HOH A 24 524 21 HOH HOH . 
Q 6 HOH A 25 525 122 HOH HOH . 
Q 6 HOH A 26 526 79 HOH HOH . 
Q 6 HOH A 27 527 32 HOH HOH . 
Q 6 HOH A 28 528 123 HOH HOH . 
Q 6 HOH A 29 529 91 HOH HOH . 
Q 6 HOH A 30 530 29 HOH HOH . 
Q 6 HOH A 31 531 107 HOH HOH . 
Q 6 HOH A 32 532 93 HOH HOH . 
Q 6 HOH A 33 533 18 HOH HOH . 
Q 6 HOH A 34 534 96 HOH HOH . 
Q 6 HOH A 35 535 71 HOH HOH . 
Q 6 HOH A 36 536 85 HOH HOH . 
Q 6 HOH A 37 537 58 HOH HOH . 
Q 6 HOH A 38 538 108 HOH HOH . 
Q 6 HOH A 39 539 48 HOH HOH . 
Q 6 HOH A 40 540 92 HOH HOH . 
Q 6 HOH A 41 541 117 HOH HOH . 
Q 6 HOH A 42 542 115 HOH HOH . 
Q 6 HOH A 43 543 126 HOH HOH . 
Q 6 HOH A 44 544 67 HOH HOH . 
Q 6 HOH A 45 545 101 HOH HOH . 
Q 6 HOH A 46 546 127 HOH HOH . 
Q 6 HOH A 47 547 121 HOH HOH . 
R 6 HOH B 1 501 41 HOH HOH . 
R 6 HOH B 2 502 6 HOH HOH . 
R 6 HOH B 3 503 5 HOH HOH . 
R 6 HOH B 4 504 36 HOH HOH . 
R 6 HOH B 5 505 25 HOH HOH . 
R 6 HOH B 6 506 11 HOH HOH . 
R 6 HOH B 7 507 82 HOH HOH . 
R 6 HOH B 8 508 4 HOH HOH . 
R 6 HOH B 9 509 60 HOH HOH . 
R 6 HOH B 10 510 33 HOH HOH . 
R 6 HOH B 11 511 130 HOH HOH . 
R 6 HOH B 12 512 59 HOH HOH . 
R 6 HOH B 13 513 16 HOH HOH . 
R 6 HOH B 14 514 88 HOH HOH . 
R 6 HOH B 15 515 81 HOH HOH . 
R 6 HOH B 16 516 95 HOH HOH . 
R 6 HOH B 17 517 74 HOH HOH . 
R 6 HOH B 18 518 31 HOH HOH . 
R 6 HOH B 19 519 2 HOH HOH . 
R 6 HOH B 20 520 23 HOH HOH . 
R 6 HOH B 21 521 55 HOH HOH . 
R 6 HOH B 22 522 110 HOH HOH . 
R 6 HOH B 23 523 98 HOH HOH . 
R 6 HOH B 24 524 56 HOH HOH . 
R 6 HOH B 25 525 57 HOH HOH . 
R 6 HOH B 26 526 94 HOH HOH . 
R 6 HOH B 27 527 34 HOH HOH . 
R 6 HOH B 28 528 104 HOH HOH . 
R 6 HOH B 29 529 14 HOH HOH . 
R 6 HOH B 30 530 89 HOH HOH . 
R 6 HOH B 31 531 52 HOH HOH . 
R 6 HOH B 32 532 109 HOH HOH . 
R 6 HOH B 33 533 75 HOH HOH . 
R 6 HOH B 34 534 39 HOH HOH . 
R 6 HOH B 35 535 105 HOH HOH . 
R 6 HOH B 36 536 54 HOH HOH . 
R 6 HOH B 37 537 112 HOH HOH . 
R 6 HOH B 38 538 73 HOH HOH . 
R 6 HOH B 39 539 66 HOH HOH . 
R 6 HOH B 40 540 124 HOH HOH . 
R 6 HOH B 41 541 125 HOH HOH . 
R 6 HOH B 42 542 68 HOH HOH . 
R 6 HOH B 43 543 64 HOH HOH . 
R 6 HOH B 44 544 120 HOH HOH . 
R 6 HOH B 45 545 72 HOH HOH . 
R 6 HOH B 46 546 99 HOH HOH . 
R 6 HOH B 47 547 83 HOH HOH . 
R 6 HOH B 48 548 61 HOH HOH . 
R 6 HOH B 49 549 86 HOH HOH . 
R 6 HOH B 50 550 119 HOH HOH . 
R 6 HOH B 51 551 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . F 3 9.706 -11.713 0.904 1 83.09 ? P AMP 404 A 1 
HETATM 2 O O1P AMP . . . F 3 8.553 -11.664 -0.081 1 68.45 ? O1P AMP 404 A 1 
HETATM 3 O O2P AMP . . . F 3 10.471 -13.022 0.853 1 82.93 ? O2P AMP 404 A 1 
HETATM 4 O O3P AMP . . . F 3 9.295 -11.324 2.312 1 72.67 ? O3P AMP 404 A 1 
HETATM 5 O O5' AMP . . . F 3 10.745 -10.576 0.422 1 75.68 ? O5' AMP 404 A 1 
HETATM 6 C C5' AMP . . . F 3 11.288 -10.651 -0.921 1 71.32 ? C5' AMP 404 A 1 
HETATM 7 C C4' AMP . . . F 3 12.618 -9.939 -0.963 1 69.2 ? C4' AMP 404 A 1 
HETATM 8 O O4' AMP . . . F 3 13.355 -10.401 -2.121 1 91.04 ? O4' AMP 404 A 1 
HETATM 9 C C3' AMP . . . F 3 12.547 -8.409 -1.049 1 71.33 ? C3' AMP 404 A 1 
HETATM 10 O O3' AMP . . . F 3 13.155 -7.832 0.101 1 72.65 ? O3' AMP 404 A 1 
HETATM 11 C C2' AMP . . . F 3 13.269 -8.021 -2.347 1 70.93 ? C2' AMP 404 A 1 
HETATM 12 O O2' AMP . . . F 3 14.365 -7.156 -2.14 1 66.36 ? O2' AMP 404 A 1 
HETATM 13 C C1' AMP . . . F 3 13.768 -9.336 -2.943 1 90.5 ? C1' AMP 404 A 1 
HETATM 14 N N9 AMP . . . F 3 13.255 -9.581 -4.285 1 98.14 ? N9 AMP 404 A 1 
HETATM 15 C C8 AMP . . . F 3 12.277 -10.476 -4.639 1 88.93 ? C8 AMP 404 A 1 
HETATM 16 N N7 AMP . . . F 3 12.013 -10.478 -5.921 1 92.06 ? N7 AMP 404 A 1 
HETATM 17 C C5 AMP . . . F 3 12.87 -9.523 -6.45 1 98.89 ? C5 AMP 404 A 1 
HETATM 18 C C6 AMP . . . F 3 13.072 -9.056 -7.763 1 95.01 ? C6 AMP 404 A 1 
HETATM 19 N N6 AMP . . . F 3 12.4 -9.504 -8.819 1 87.59 ? N6 AMP 404 A 1 
HETATM 20 N N1 AMP . . . F 3 14.005 -8.092 -7.945 1 97.45 ? N1 AMP 404 A 1 
HETATM 21 C C2 AMP . . . F 3 14.677 -7.643 -6.878 1 100.78 ? C2 AMP 404 A 1 
HETATM 22 N N3 AMP . . . F 3 14.572 -8.006 -5.603 1 98.89 ? N3 AMP 404 A 1 
HETATM 23 C C4 AMP . . . F 3 13.64 -8.961 -5.45 1 100.96 ? C4 AMP 404 A 1 
HETATM 24 H "H5'1" AMP . . . F 3 10.597 -10.193 -1.63 1 85.63 ? "H5'1" AMP 404 A 1 
HETATM 25 H "H5'2" AMP . . . F 3 11.422 -11.697 -1.205 1 85.63 ? "H5'2" AMP 404 A 1 
HETATM 26 H H4' AMP . . . F 3 13.174 -10.203 -0.052 1 83.09 ? H4' AMP 404 A 1 
HETATM 27 H H3' AMP . . . F 3 11.5 -8.14 -1.196 1 85.64 ? H3' AMP 404 A 1 
HETATM 28 H HO3' AMP . . . F 3 13.108 -6.873 0.01 1 87.22 ? HO3' AMP 404 A 1 
HETATM 29 H H2' AMP . . . F 3 12.547 -7.564 -3.038 1 85.17 ? H2' AMP 404 A 1 
HETATM 30 H HO2' AMP . . . F 3 14.206 -6.333 -2.617 1 79.68 ? HO2' AMP 404 A 1 
HETATM 31 H H1' AMP . . . F 3 14.866 -9.304 -2.973 1 108.65 ? H1' AMP 404 A 1 
HETATM 32 H H8 AMP . . . F 3 11.773 -11.118 -3.928 1 106.76 ? H8 AMP 404 A 1 
HETATM 33 H HN61 AMP . . . F 3 12.595 -9.129 -9.736 1 105.15 ? HN61 AMP 404 A 1 
HETATM 34 H HN62 AMP . . . F 3 11.704 -10.225 -8.708 1 105.15 ? HN62 AMP 404 A 1 
HETATM 35 H H2 AMP . . . F 3 15.414 -6.879 -7.082 1 120.98 ? H2 AMP 404 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           532 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#