data_9CTG # _model_server_result.job_id u4k1-tPmGwvVByF0m0KT2g _model_server_result.datetime_utc '2025-04-28 07:10:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ctg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1303}' # _entry.id 9CTG # _exptl.entry_id 9CTG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 478.92 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CTG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 434 A SER 434 1_555 L MG MG . A MG 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 A OE1 GLN 475 A GLN 475 1_555 L MG MG . A MG 1311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc3 K MG MG . A MG 1310 1_555 M O1B AGS . A AGS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc4 K MG MG . A MG 1310 1_555 M O3B AGS . A AGS 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 L MG MG . A MG 1311 1_555 N O2B AGS . A AGS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc6 L MG MG . A MG 1311 1_555 N O2G AGS . A AGS 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? # _chem_comp.formula 'C34 H70' _chem_comp.formula_weight 478.92 _chem_comp.id UPL _chem_comp.mon_nstd_flag . _chem_comp.name 'UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'UNKNOWN PHOSPHOLIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 UPL sing 405 n n C1 H11 UPL sing 406 n n C1 H12 UPL sing 407 n n C1 H13 UPL sing 408 n n C2 C3 UPL sing 409 n n C2 H21 UPL sing 410 n n C2 H22 UPL sing 411 n n C3 C4 UPL sing 412 n n C3 H31 UPL sing 413 n n C3 H32 UPL sing 414 n n C4 C5 UPL sing 415 n n C4 H41 UPL sing 416 n n C4 H42 UPL sing 417 n n C5 C6 UPL sing 418 n n C5 H51 UPL sing 419 n n C5 H52 UPL sing 420 n n C6 C7 UPL sing 421 n n C6 H61 UPL sing 422 n n C6 H62 UPL sing 423 n n C7 C8 UPL sing 424 n n C7 H71 UPL sing 425 n n C7 H72 UPL sing 426 n n C8 C9 UPL sing 427 n n C8 H81 UPL sing 428 n n C8 H82 UPL sing 429 n n C9 C10 UPL sing 430 n n C9 H91 UPL sing 431 n n C9 H92 UPL sing 432 n n C10 C11 UPL sing 433 n n C10 H101 UPL sing 434 n n C10 H102 UPL sing 435 n n C11 C12 UPL sing 436 n n C11 H111 UPL sing 437 n n C11 H112 UPL sing 438 n n C12 C13 UPL sing 439 n n C12 C26 UPL sing 440 n n C12 H121 UPL sing 441 n n C13 C14 UPL sing 442 n n C13 H131 UPL sing 443 n n C13 H132 UPL sing 444 n n C14 C15 UPL sing 445 n n C14 H141 UPL sing 446 n n C14 H142 UPL sing 447 n n C15 C16 UPL sing 448 n n C15 H151 UPL sing 449 n n C15 H152 UPL sing 450 n n C16 C17 UPL sing 451 n n C16 H161 UPL sing 452 n n C16 H162 UPL sing 453 n n C17 C18 UPL sing 454 n n C17 H171 UPL sing 455 n n C17 H172 UPL sing 456 n n C18 C19 UPL sing 457 n n C18 H181 UPL sing 458 n n C18 H182 UPL sing 459 n n C19 C20 UPL sing 460 n n C19 H191 UPL sing 461 n n C19 H192 UPL sing 462 n n C20 C21 UPL sing 463 n n C20 H201 UPL sing 464 n n C20 H202 UPL sing 465 n n C21 C22 UPL sing 466 n n C21 H211 UPL sing 467 n n C21 H212 UPL sing 468 n n C22 C23 UPL sing 469 n n C22 H221 UPL sing 470 n n C22 H222 UPL sing 471 n n C23 C24 UPL sing 472 n n C23 H231 UPL sing 473 n n C23 H232 UPL sing 474 n n C24 C25 UPL sing 475 n n C24 H241 UPL sing 476 n n C24 H242 UPL sing 477 n n C25 H251 UPL sing 478 n n C25 H252 UPL sing 479 n n C25 H253 UPL sing 480 n n C26 C27 UPL sing 481 n n C26 H261 UPL sing 482 n n C26 H262 UPL sing 483 n n C27 C28 UPL sing 484 n n C27 H271 UPL sing 485 n n C27 H272 UPL sing 486 n n C28 C29 UPL sing 487 n n C28 H281 UPL sing 488 n n C28 H282 UPL sing 489 n n C29 C30 UPL sing 490 n n C29 H291 UPL sing 491 n n C29 H292 UPL sing 492 n n C30 C31 UPL sing 493 n n C30 H301 UPL sing 494 n n C30 H302 UPL sing 495 n n C31 C32 UPL sing 496 n n C31 H311 UPL sing 497 n n C31 H312 UPL sing 498 n n C32 C33 UPL sing 499 n n C32 H321 UPL sing 500 n n C32 H322 UPL sing 501 n n C33 C34 UPL sing 502 n n C33 H331 UPL sing 503 n n C33 H332 UPL sing 504 n n C34 H341 UPL sing 505 n n C34 H342 UPL sing 506 n n C34 H343 UPL sing 507 n n # _atom_sites.entry_id 9CTG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UPL A 1 1301 1305 UPL UPL . C 2 UPL A 1 1302 1306 UPL UPL . D 2 UPL A 1 1303 1307 UPL UPL . E 2 UPL A 1 1304 1308 UPL UPL . F 2 UPL A 1 1305 1309 UPL UPL . G 2 UPL A 1 1306 1310 UPL UPL . H 2 UPL A 1 1307 1311 UPL UPL . I 2 UPL A 1 1308 1312 UPL UPL . J 2 UPL A 1 1309 1313 UPL UPL . K 3 MG A 1 1310 1301 MG MG . L 3 MG A 1 1311 1302 MG MG . M 4 AGS A 1 1312 1303 AGS AGS . N 4 AGS A 1 1313 1304 AGS AGS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 UPL . . . D 2 100.518 122.557 126.302 1 55.86 ? C13 UPL 1303 A 1 HETATM 2 C C14 UPL . . . D 2 99.814 122.925 125.003 1 56.42 ? C14 UPL 1303 A 1 HETATM 3 C C15 UPL . . . D 2 100.649 122.654 123.765 1 53.12 ? C15 UPL 1303 A 1 HETATM 4 C C16 UPL . . . D 2 99.895 122.847 122.461 1 55.52 ? C16 UPL 1303 A 1 HETATM 5 C C17 UPL . . . D 2 100.768 122.739 121.222 1 56.58 ? C17 UPL 1303 A 1 HETATM 6 C C18 UPL . . . D 2 100.986 121.314 120.74 1 53.11 ? C18 UPL 1303 A 1 HETATM 7 C C19 UPL . . . D 2 102.245 120.663 121.287 1 52.85 ? C19 UPL 1303 A 1 HETATM 8 C C20 UPL . . . D 2 102.591 119.344 120.619 1 50.75 ? C20 UPL 1303 A 1 HETATM 9 C C21 UPL . . . D 2 102.595 119.411 119.102 1 53.16 ? C21 UPL 1303 A 1 HETATM 10 C C22 UPL . . . D 2 102.962 118.1 118.428 1 59.36 ? C22 UPL 1303 A 1 HETATM 11 C C23 UPL . . . D 2 104.383 117.639 118.709 1 56.23 ? C23 UPL 1303 A 1 HETATM 12 C C24 UPL . . . D 2 104.772 116.366 117.981 1 57.48 ? C24 UPL 1303 A 1 HETATM 13 C C25 UPL . . . D 2 104.552 116.447 116.489 1 55.68 ? C25 UPL 1303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #