data_9CTI # _model_server_result.job_id tbf7C3sgOuYF2uJo5cF-dw _model_server_result.datetime_utc '2025-03-05 22:44:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3001}' # _entry.id 9CTI # _exptl.entry_id 9CTI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 853.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONYL-COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CTI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 186 A ALA 186 1_555 A N MCS 187 A MCS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C MCS 187 A MCS 187 1_555 A N SER 188 A SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ASP 2240 A ASP 2240 1_555 A N 4HH 2241 A 4HH 2241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C 4HH 2241 A 4HH 2241 1_555 A N LEU 2242 A LEU 2242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C ALA 186 B ALA 186 1_555 B N MCS 187 B MCS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 B C MCS 187 B MCS 187 1_555 B N SER 188 B SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C ASP 2240 B ASP 2240 1_555 B N 4HH 2241 B 4HH 2241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C 4HH 2241 B 4HH 2241 1_555 B N LEU 2242 B LEU 2242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C24 H38 N7 O19 P3 S' _chem_comp.formula_weight 853.58 _chem_comp.id MLC _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 MLC sing 311 n y C8 N7 MLC doub 312 n y C8 H8 MLC sing 313 n n N9 C4 MLC sing 314 n y N9 C1' MLC sing 315 n n C4 C5 MLC sing 316 n y C4 N3 MLC doub 317 n y C5 N7 MLC sing 318 n y C5 C6 MLC doub 319 n y N3 C2 MLC sing 320 n y C2 N1 MLC doub 321 n y C2 H2 MLC sing 322 n n N1 C6 MLC sing 323 n y C6 N6 MLC sing 324 n n N6 HN61 MLC sing 325 n n N6 HN62 MLC sing 326 n n C1' C2' MLC sing 327 n n C1' O4' MLC sing 328 n n C1' H1' MLC sing 329 n n C2' O2' MLC sing 330 n n C2' C3' MLC sing 331 n n C2' H2' MLC sing 332 n n O2' HO2 MLC sing 333 n n C3' O3' MLC sing 334 n n C3' C4' MLC sing 335 n n C3' H3' MLC sing 336 n n O3' P3 MLC sing 337 n n C4' O4' MLC sing 338 n n C4' C5' MLC sing 339 n n C4' H4' MLC sing 340 n n C5' O5' MLC sing 341 n n C5' "H5'1" MLC sing 342 n n C5' "H5'2" MLC sing 343 n n O5' P1 MLC sing 344 n n P1 O11 MLC doub 345 n n P1 O12 MLC sing 346 n n P1 O6 MLC sing 347 n n O12 H12 MLC sing 348 n n O6 P2 MLC sing 349 n n P2 O21 MLC doub 350 n n P2 O22 MLC sing 351 n n P2 O7 MLC sing 352 n n O22 H22 MLC sing 353 n n O7 CPB MLC sing 354 n n CPB CPA MLC sing 355 n n CPB HPB1 MLC sing 356 n n CPB HPB2 MLC sing 357 n n CPA CP7 MLC sing 358 n n CPA CP9 MLC sing 359 n n CPA CP8 MLC sing 360 n n CP7 OP3 MLC sing 361 n n CP7 CP6 MLC sing 362 n n CP7 HP7 MLC sing 363 n n CP9 HP91 MLC sing 364 n n CP9 HP92 MLC sing 365 n n CP9 HP93 MLC sing 366 n n CP8 HP81 MLC sing 367 n n CP8 HP82 MLC sing 368 n n CP8 HP83 MLC sing 369 n n OP3 HP3 MLC sing 370 n n CP6 OP2 MLC doub 371 n n CP6 NP2 MLC sing 372 n n NP2 CP5 MLC sing 373 n n NP2 HP2 MLC sing 374 n n CP5 CP4 MLC sing 375 n n CP5 HP51 MLC sing 376 n n CP5 HP52 MLC sing 377 n n CP4 CP3 MLC sing 378 n n CP4 HP41 MLC sing 379 n n CP4 HP42 MLC sing 380 n n CP3 OP1 MLC doub 381 n n CP3 NP1 MLC sing 382 n n NP1 CP2 MLC sing 383 n n NP1 HP1 MLC sing 384 n n CP2 CP1 MLC sing 385 n n CP2 HP21 MLC sing 386 n n CP2 HP22 MLC sing 387 n n CP1 S MLC sing 388 n n CP1 HP11 MLC sing 389 n n CP1 HP12 MLC sing 390 n n S CM1 MLC sing 391 n n P3 O31 MLC sing 392 n n P3 O32 MLC sing 393 n n P3 O33 MLC doub 394 n n O31 H31 MLC sing 395 n n O32 H32 MLC sing 396 n n CM1 CM2 MLC sing 397 n n CM1 OM2 MLC doub 398 n n CM2 CM3 MLC sing 399 n n CM2 HM21 MLC sing 400 n n CM2 HM22 MLC sing 401 n n CM3 OM3 MLC sing 402 n n CM3 OM4 MLC doub 403 n n OM3 HO3 MLC sing 404 n n # _atom_sites.entry_id 9CTI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLC A 1 3001 3001 MLC MLC . D 2 MLC B 1 3001 3001 MLC MLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 MLC . . . C 2 230.364 198.791 225.745 1 110.62 ? C8 MLC 3001 A 1 HETATM 2 N N9 MLC . . . C 2 230.842 198.636 224.504 1 110.04 ? N9 MLC 3001 A 1 HETATM 3 C C4 MLC . . . C 2 232.159 198.94 224.52 1 114.58 ? C4 MLC 3001 A 1 HETATM 4 C C5 MLC . . . C 2 232.488 199.286 225.78 1 116.26 ? C5 MLC 3001 A 1 HETATM 5 N N7 MLC . . . C 2 231.383 199.194 226.538 1 111.91 ? N7 MLC 3001 A 1 HETATM 6 N N3 MLC . . . C 2 233.094 198.949 223.558 1 121.12 ? N3 MLC 3001 A 1 HETATM 7 C C2 MLC . . . C 2 234.371 199.306 223.858 1 121.75 ? C2 MLC 3001 A 1 HETATM 8 N N1 MLC . . . C 2 234.713 199.657 225.13 1 121.11 ? N1 MLC 3001 A 1 HETATM 9 C C6 MLC . . . C 2 233.791 199.649 226.078 1 118.16 ? C6 MLC 3001 A 1 HETATM 10 N N6 MLC . . . C 2 234.502 200.071 227.294 1 112.19 ? N6 MLC 3001 A 1 HETATM 11 C C1' MLC . . . C 2 230.074 198.233 223.465 1 110.14 ? C1' MLC 3001 A 1 HETATM 12 C C2' MLC . . . C 2 229.386 199.412 222.784 1 110.87 ? C2' MLC 3001 A 1 HETATM 13 O O2' MLC . . . C 2 228.148 199.786 223.516 1 109.42 ? O2' MLC 3001 A 1 HETATM 14 C C3' MLC . . . C 2 229.097 198.916 221.59 1 115.57 ? C3' MLC 3001 A 1 HETATM 15 O O3' MLC . . . C 2 227.901 198.095 221.666 1 117.47 ? O3' MLC 3001 A 1 HETATM 16 C C4' MLC . . . C 2 230.374 197.979 221.197 1 118.43 ? C4' MLC 3001 A 1 HETATM 17 O O4' MLC . . . C 2 230.947 197.614 222.31 1 115.08 ? O4' MLC 3001 A 1 HETATM 18 C C5' MLC . . . C 2 231.354 198.777 220.346 1 119.8 ? C5' MLC 3001 A 1 HETATM 19 O O5' MLC . . . C 2 232.635 198.22 220.431 1 122.76 ? O5' MLC 3001 A 1 HETATM 20 P P1 MLC . . . C 2 232.946 196.789 219.655 1 137.46 ? P1 MLC 3001 A 1 HETATM 21 O O11 MLC . . . C 2 233.709 197.073 218.379 1 126.44 ? O11 MLC 3001 A 1 HETATM 22 O O12 MLC . . . C 2 231.659 196.083 219.32 1 123.62 ? O12 MLC 3001 A 1 HETATM 23 O O6 MLC . . . C 2 233.874 195.814 220.645 1 137.62 ? O6 MLC 3001 A 1 HETATM 24 P P2 MLC . . . C 2 235.548 195.856 220.644 1 145.72 ? P2 MLC 3001 A 1 HETATM 25 O O21 MLC . . . C 2 235.999 197.266 220.333 1 135.06 ? O21 MLC 3001 A 1 HETATM 26 O O22 MLC . . . C 2 236.068 194.92 219.582 1 135.1 ? O22 MLC 3001 A 1 HETATM 27 O O7 MLC . . . C 2 236.141 195.392 222.132 1 130 ? O7 MLC 3001 A 1 HETATM 28 C CPB MLC . . . C 2 235.345 194.536 222.954 1 121.57 ? CPB MLC 3001 A 1 HETATM 29 C CPA MLC . . . C 2 236.253 193.515 223.685 1 125.17 ? CPA MLC 3001 A 1 HETATM 30 C CP7 MLC . . . C 2 235.489 192.155 223.807 1 122.47 ? CP7 MLC 3001 A 1 HETATM 31 C CP9 MLC . . . C 2 236.643 194.07 225.067 1 123.81 ? CP9 MLC 3001 A 1 HETATM 32 C CP8 MLC . . . C 2 237.544 193.296 222.853 1 127.14 ? CP8 MLC 3001 A 1 HETATM 33 O OP3 MLC . . . C 2 235.967 191.292 222.841 1 118.26 ? OP3 MLC 3001 A 1 HETATM 34 C CP6 MLC . . . C 2 235.665 191.49 225.193 1 126.38 ? CP6 MLC 3001 A 1 HETATM 35 O OP2 MLC . . . C 2 234.773 191.504 225.971 1 122.15 ? OP2 MLC 3001 A 1 HETATM 36 N NP2 MLC . . . C 2 236.929 190.829 225.548 1 125.1 ? NP2 MLC 3001 A 1 HETATM 37 C CP5 MLC . . . C 2 237.08 190.185 226.861 1 120.95 ? CP5 MLC 3001 A 1 HETATM 38 C CP4 MLC . . . C 2 237.238 191.215 227.994 1 122.75 ? CP4 MLC 3001 A 1 HETATM 39 C CP3 MLC . . . C 2 237.021 190.468 229.33 1 123.34 ? CP3 MLC 3001 A 1 HETATM 40 O OP1 MLC . . . C 2 235.951 190.463 229.825 1 126.15 ? OP1 MLC 3001 A 1 HETATM 41 N NP1 MLC . . . C 2 238.124 189.759 229.973 1 118.68 ? NP1 MLC 3001 A 1 HETATM 42 C CP2 MLC . . . C 2 237.894 189.024 231.247 1 121.25 ? CP2 MLC 3001 A 1 HETATM 43 C CP1 MLC . . . C 2 238.637 189.649 232.429 1 122.36 ? CP1 MLC 3001 A 1 HETATM 44 S S MLC . . . C 2 237.734 191.127 232.968 1 127 ? S MLC 3001 A 1 HETATM 45 P P3 MLC . . . C 2 226.391 198.808 221.384 1 122.75 ? P3 MLC 3001 A 1 HETATM 46 O O31 MLC . . . C 2 225.546 197.888 220.521 1 112.64 ? O31 MLC 3001 A 1 HETATM 47 O O32 MLC . . . C 2 226.58 200.139 220.686 1 115.79 ? O32 MLC 3001 A 1 HETATM 48 O O33 MLC . . . C 2 225.693 199.031 222.706 1 108.53 ? O33 MLC 3001 A 1 HETATM 49 C CM1 MLC . . . C 2 236.293 190.522 233.935 1 117.63 ? CM1 MLC 3001 A 1 HETATM 50 C CM2 MLC . . . C 2 236.237 190.793 235.452 1 118.43 ? CM2 MLC 3001 A 1 HETATM 51 C CM3 MLC . . . C 2 236.968 189.656 236.183 1 123.94 ? CM3 MLC 3001 A 1 HETATM 52 O OM2 MLC . . . C 2 235.416 189.924 233.394 1 107.12 ? OM2 MLC 3001 A 1 HETATM 53 O OM3 MLC . . . C 2 237.506 188.722 235.522 1 123.64 ? OM3 MLC 3001 A 1 HETATM 54 O OM4 MLC . . . C 2 237.015 189.645 237.445 1 124.38 ? OM4 MLC 3001 A 1 HETATM 55 H H8 MLC . . . C 2 229.487 198.646 226.015 1 107.1 ? H8 MLC 3001 A 1 HETATM 56 H H2 MLC . . . C 2 235.067 199.334 223.242 1 121.31 ? H2 MLC 3001 A 1 HETATM 57 H HN61 MLC . . . C 2 235.318 200.337 227.245 1 114.79 ? HN61 MLC 3001 A 1 HETATM 58 H HN62 MLC . . . C 2 234.102 200.05 228.055 1 111.72 ? HN62 MLC 3001 A 1 HETATM 59 H H1' MLC . . . C 2 229.41 197.593 223.763 1 108.55 ? H1' MLC 3001 A 1 HETATM 60 H H2' MLC . . . C 2 229.992 200.165 222.705 1 111.95 ? H2' MLC 3001 A 1 HETATM 61 H HO2 MLC . . . C 2 228.068 199.297 224.206 1 107.73 ? HO2 MLC 3001 A 1 HETATM 62 H H3' MLC . . . C 2 228.988 199.628 220.942 1 115.28 ? H3' MLC 3001 A 1 HETATM 63 H H4' MLC . . . C 2 230.066 197.197 220.714 1 116.73 ? H4' MLC 3001 A 1 HETATM 64 H "H5'1" MLC . . . C 2 231.38 199.69 220.671 1 119.04 ? "H5'1" MLC 3001 A 1 HETATM 65 H "H5'2" MLC . . . C 2 231.059 198.77 219.422 1 120.32 ? "H5'2" MLC 3001 A 1 HETATM 66 H HPB1 MLC . . . C 2 234.709 194.064 222.395 1 122.55 ? HPB1 MLC 3001 A 1 HETATM 67 H HPB2 MLC . . . C 2 234.868 195.071 223.607 1 121.03 ? HPB2 MLC 3001 A 1 HETATM 68 H HP7 MLC . . . C 2 234.543 192.304 223.654 1 117.84 ? HP7 MLC 3001 A 1 HETATM 69 H HP91 MLC . . . C 2 235.873 194.074 225.655 1 121.85 ? HP91 MLC 3001 A 1 HETATM 70 H HP92 MLC . . . C 2 236.971 194.977 224.964 1 124.95 ? HP92 MLC 3001 A 1 HETATM 71 H HP93 MLC . . . C 2 237.343 193.521 225.453 1 125.43 ? HP93 MLC 3001 A 1 HETATM 72 H HP81 MLC . . . C 2 238.049 192.557 223.227 1 125.92 ? HP81 MLC 3001 A 1 HETATM 73 H HP82 MLC . . . C 2 238.085 194.1 222.881 1 129.14 ? HP82 MLC 3001 A 1 HETATM 74 H HP83 MLC . . . C 2 237.309 193.096 221.933 1 127.22 ? HP83 MLC 3001 A 1 HETATM 75 H HP3 MLC . . . C 2 235.931 190.495 223.133 1 117.64 ? HP3 MLC 3001 A 1 HETATM 76 H HP2 MLC . . . C 2 237.576 190.809 224.983 1 124.03 ? HP2 MLC 3001 A 1 HETATM 77 H HP51 MLC . . . C 2 237.86 189.61 226.844 1 120.73 ? HP51 MLC 3001 A 1 HETATM 78 H HP52 MLC . . . C 2 236.295 189.642 227.037 1 119.12 ? HP52 MLC 3001 A 1 HETATM 79 H HP41 MLC . . . C 2 236.573 191.915 227.896 1 122.28 ? HP41 MLC 3001 A 1 HETATM 80 H HP42 MLC . . . C 2 238.128 191.597 227.97 1 124.23 ? HP42 MLC 3001 A 1 HETATM 81 H HP1 MLC . . . C 2 238.902 189.753 229.606 1 121.47 ? HP1 MLC 3001 A 1 HETATM 82 H HP21 MLC . . . C 2 238.204 188.114 231.138 1 121.23 ? HP21 MLC 3001 A 1 HETATM 83 H HP22 MLC . . . C 2 236.944 189.012 231.442 1 118.53 ? HP22 MLC 3001 A 1 HETATM 84 H HP11 MLC . . . C 2 239.539 189.872 232.179 1 124.18 ? HP11 MLC 3001 A 1 HETATM 85 H HP12 MLC . . . C 2 238.664 189.014 233.161 1 122.71 ? HP12 MLC 3001 A 1 HETATM 86 H HM21 MLC . . . C 2 235.313 190.832 235.745 1 114.7 ? HM21 MLC 3001 A 1 HETATM 87 H HM22 MLC . . . C 2 236.677 191.634 235.645 1 118.17 ? HM22 MLC 3001 A 1 # _model_server_stats.io_time_ms 107 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 87 #