data_9CTI # _model_server_result.job_id nwiosJfuJhVygjeoz0sq6g _model_server_result.datetime_utc '2025-03-05 22:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cti # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3001}' # _entry.id 9CTI # _exptl.entry_id 9CTI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 853.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONYL-COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CTI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CTI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 186 A ALA 186 1_555 A N MCS 187 A MCS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale2 A C MCS 187 A MCS 187 1_555 A N SER 188 A SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ASP 2240 A ASP 2240 1_555 A N 4HH 2241 A 4HH 2241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C 4HH 2241 A 4HH 2241 1_555 A N LEU 2242 A LEU 2242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 B C ALA 186 B ALA 186 1_555 B N MCS 187 B MCS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 B C MCS 187 B MCS 187 1_555 B N SER 188 B SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C ASP 2240 B ASP 2240 1_555 B N 4HH 2241 B 4HH 2241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C 4HH 2241 B 4HH 2241 1_555 B N LEU 2242 B LEU 2242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C24 H38 N7 O19 P3 S' _chem_comp.formula_weight 853.58 _chem_comp.id MLC _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 MLC sing 311 n y C8 N7 MLC doub 312 n y C8 H8 MLC sing 313 n n N9 C4 MLC sing 314 n y N9 C1' MLC sing 315 n n C4 C5 MLC sing 316 n y C4 N3 MLC doub 317 n y C5 N7 MLC sing 318 n y C5 C6 MLC doub 319 n y N3 C2 MLC sing 320 n y C2 N1 MLC doub 321 n y C2 H2 MLC sing 322 n n N1 C6 MLC sing 323 n y C6 N6 MLC sing 324 n n N6 HN61 MLC sing 325 n n N6 HN62 MLC sing 326 n n C1' C2' MLC sing 327 n n C1' O4' MLC sing 328 n n C1' H1' MLC sing 329 n n C2' O2' MLC sing 330 n n C2' C3' MLC sing 331 n n C2' H2' MLC sing 332 n n O2' HO2 MLC sing 333 n n C3' O3' MLC sing 334 n n C3' C4' MLC sing 335 n n C3' H3' MLC sing 336 n n O3' P3 MLC sing 337 n n C4' O4' MLC sing 338 n n C4' C5' MLC sing 339 n n C4' H4' MLC sing 340 n n C5' O5' MLC sing 341 n n C5' "H5'1" MLC sing 342 n n C5' "H5'2" MLC sing 343 n n O5' P1 MLC sing 344 n n P1 O11 MLC doub 345 n n P1 O12 MLC sing 346 n n P1 O6 MLC sing 347 n n O12 H12 MLC sing 348 n n O6 P2 MLC sing 349 n n P2 O21 MLC doub 350 n n P2 O22 MLC sing 351 n n P2 O7 MLC sing 352 n n O22 H22 MLC sing 353 n n O7 CPB MLC sing 354 n n CPB CPA MLC sing 355 n n CPB HPB1 MLC sing 356 n n CPB HPB2 MLC sing 357 n n CPA CP7 MLC sing 358 n n CPA CP9 MLC sing 359 n n CPA CP8 MLC sing 360 n n CP7 OP3 MLC sing 361 n n CP7 CP6 MLC sing 362 n n CP7 HP7 MLC sing 363 n n CP9 HP91 MLC sing 364 n n CP9 HP92 MLC sing 365 n n CP9 HP93 MLC sing 366 n n CP8 HP81 MLC sing 367 n n CP8 HP82 MLC sing 368 n n CP8 HP83 MLC sing 369 n n OP3 HP3 MLC sing 370 n n CP6 OP2 MLC doub 371 n n CP6 NP2 MLC sing 372 n n NP2 CP5 MLC sing 373 n n NP2 HP2 MLC sing 374 n n CP5 CP4 MLC sing 375 n n CP5 HP51 MLC sing 376 n n CP5 HP52 MLC sing 377 n n CP4 CP3 MLC sing 378 n n CP4 HP41 MLC sing 379 n n CP4 HP42 MLC sing 380 n n CP3 OP1 MLC doub 381 n n CP3 NP1 MLC sing 382 n n NP1 CP2 MLC sing 383 n n NP1 HP1 MLC sing 384 n n CP2 CP1 MLC sing 385 n n CP2 HP21 MLC sing 386 n n CP2 HP22 MLC sing 387 n n CP1 S MLC sing 388 n n CP1 HP11 MLC sing 389 n n CP1 HP12 MLC sing 390 n n S CM1 MLC sing 391 n n P3 O31 MLC sing 392 n n P3 O32 MLC sing 393 n n P3 O33 MLC doub 394 n n O31 H31 MLC sing 395 n n O32 H32 MLC sing 396 n n CM1 CM2 MLC sing 397 n n CM1 OM2 MLC doub 398 n n CM2 CM3 MLC sing 399 n n CM2 HM21 MLC sing 400 n n CM2 HM22 MLC sing 401 n n CM3 OM3 MLC sing 402 n n CM3 OM4 MLC doub 403 n n OM3 HO3 MLC sing 404 n n # _atom_sites.entry_id 9CTI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLC A 1 3001 3001 MLC MLC . D 2 MLC B 1 3001 3001 MLC MLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 MLC . . . D 2 105.886 140.096 223.728 1 125.03 ? C8 MLC 3001 B 1 HETATM 2 N N9 MLC . . . D 2 106.956 139.811 224.486 1 120.52 ? N9 MLC 3001 B 1 HETATM 3 C C4 MLC . . . D 2 106.509 139.307 225.66 1 121.59 ? C4 MLC 3001 B 1 HETATM 4 C C5 MLC . . . D 2 105.162 139.279 225.617 1 125.49 ? C5 MLC 3001 B 1 HETATM 5 N N7 MLC . . . D 2 104.775 139.765 224.426 1 123.99 ? N7 MLC 3001 B 1 HETATM 6 N N3 MLC . . . D 2 107.152 138.871 226.754 1 117.55 ? N3 MLC 3001 B 1 HETATM 7 C C2 MLC . . . D 2 106.441 138.402 227.815 1 114.94 ? C2 MLC 3001 B 1 HETATM 8 N N1 MLC . . . D 2 105.079 138.372 227.781 1 119.15 ? N1 MLC 3001 B 1 HETATM 9 C C6 MLC . . . D 2 104.446 138.801 226.703 1 124.25 ? C6 MLC 3001 B 1 HETATM 10 N N6 MLC . . . D 2 103.02 138.622 227.016 1 124.81 ? N6 MLC 3001 B 1 HETATM 11 C C1' MLC . . . D 2 108.238 140.021 224.098 1 116.65 ? C1' MLC 3001 B 1 HETATM 12 C C2' MLC . . . D 2 108.635 139.132 222.913 1 119.44 ? C2' MLC 3001 B 1 HETATM 13 O O2' MLC . . . D 2 109.408 137.954 223.386 1 120.4 ? O2' MLC 3001 B 1 HETATM 14 C C3' MLC . . . D 2 109.408 139.905 222.163 1 117.85 ? C3' MLC 3001 B 1 HETATM 15 O O3' MLC . . . D 2 110.775 139.846 222.648 1 113.76 ? O3' MLC 3001 B 1 HETATM 16 C C4' MLC . . . D 2 108.809 141.407 222.339 1 115.36 ? C4' MLC 3001 B 1 HETATM 17 O O4' MLC . . . D 2 108.409 141.497 223.574 1 111.95 ? O4' MLC 3001 B 1 HETATM 18 C C5' MLC . . . D 2 107.629 141.617 221.397 1 121.17 ? C5' MLC 3001 B 1 HETATM 19 O O5' MLC . . . D 2 108.076 142.111 220.167 1 126.04 ? O5' MLC 3001 B 1 HETATM 20 P P1 MLC . . . D 2 106.96 142.809 219.161 1 137.2 ? P1 MLC 3001 B 1 HETATM 21 O O11 MLC . . . D 2 106.354 141.743 218.272 1 124.76 ? O11 MLC 3001 B 1 HETATM 22 O O12 MLC . . . D 2 107.631 143.854 218.308 1 120.18 ? O12 MLC 3001 B 1 HETATM 23 O O6 MLC . . . D 2 105.757 143.529 220.072 1 133.19 ? O6 MLC 3001 B 1 HETATM 24 P P2 MLC . . . D 2 104.204 142.915 220.202 1 139.73 ? P2 MLC 3001 B 1 HETATM 25 O O21 MLC . . . D 2 104.241 141.42 219.969 1 129.31 ? O21 MLC 3001 B 1 HETATM 26 O O22 MLC . . . D 2 103.326 143.561 219.16 1 135.49 ? O22 MLC 3001 B 1 HETATM 27 O O7 MLC . . . D 2 103.588 143.232 221.719 1 127.74 ? O7 MLC 3001 B 1 HETATM 28 C CPB MLC . . . D 2 104.251 144.188 222.551 1 123.84 ? CPB MLC 3001 B 1 HETATM 29 C CPA MLC . . . D 2 103.2 145.012 223.332 1 125.09 ? CPA MLC 3001 B 1 HETATM 30 C CP7 MLC . . . D 2 103.752 146.465 223.505 1 122.98 ? CP7 MLC 3001 B 1 HETATM 31 C CP9 MLC . . . D 2 102.945 144.334 224.69 1 121.83 ? CP9 MLC 3001 B 1 HETATM 32 C CP8 MLC . . . D 2 101.889 145.048 222.503 1 128.24 ? CP8 MLC 3001 B 1 HETATM 33 O OP3 MLC . . . D 2 103.476 147.169 222.351 1 120.88 ? OP3 MLC 3001 B 1 HETATM 34 C CP6 MLC . . . D 2 103.136 147.229 224.703 1 128.36 ? CP6 MLC 3001 B 1 HETATM 35 O OP2 MLC . . . D 2 103.806 148.002 225.297 1 124.87 ? OP2 MLC 3001 B 1 HETATM 36 N NP2 MLC . . . D 2 101.739 147.033 225.113 1 129.84 ? NP2 MLC 3001 B 1 HETATM 37 C CP5 MLC . . . D 2 101.174 147.784 226.246 1 126.13 ? CP5 MLC 3001 B 1 HETATM 38 C CP4 MLC . . . D 2 101.899 147.501 227.575 1 123.48 ? CP4 MLC 3001 B 1 HETATM 39 C CP3 MLC . . . D 2 101.79 148.784 228.429 1 122.49 ? CP3 MLC 3001 B 1 HETATM 40 O OP1 MLC . . . D 2 102.311 149.77 228.046 1 122.91 ? OP1 MLC 3001 B 1 HETATM 41 N NP1 MLC . . . D 2 101.045 148.809 229.686 1 116.99 ? NP1 MLC 3001 B 1 HETATM 42 C CP2 MLC . . . D 2 100.969 150.087 230.439 1 118.22 ? CP2 MLC 3001 B 1 HETATM 43 C CP1 MLC . . . D 2 100.907 149.883 231.953 1 118.12 ? CP1 MLC 3001 B 1 HETATM 44 S S MLC . . . D 2 101.773 148.36 232.42 1 117.94 ? S MLC 3001 B 1 HETATM 45 P P3 MLC . . . D 2 112.031 140.112 221.546 1 123.6 ? P3 MLC 3001 B 1 HETATM 46 O O31 MLC . . . D 2 112.409 138.796 220.89 1 117.32 ? O31 MLC 3001 B 1 HETATM 47 O O32 MLC . . . D 2 113.236 140.675 222.275 1 104.98 ? O32 MLC 3001 B 1 HETATM 48 O O33 MLC . . . D 2 111.576 141.098 220.491 1 123.38 ? O33 MLC 3001 B 1 HETATM 49 C CM1 MLC . . . D 2 103.059 148.812 233.656 1 113.72 ? CM1 MLC 3001 B 1 HETATM 50 C CM2 MLC . . . D 2 102.858 148.444 235.143 1 117.81 ? CM2 MLC 3001 B 1 HETATM 51 C CM3 MLC . . . D 2 102.081 149.577 235.83 1 123.81 ? CM3 MLC 3001 B 1 HETATM 52 O OM2 MLC . . . D 2 104.046 149.377 233.308 1 105.08 ? OM2 MLC 3001 B 1 HETATM 53 O OM3 MLC . . . D 2 101.356 150.351 235.14 1 124.78 ? OM3 MLC 3001 B 1 HETATM 54 O OM4 MLC . . . D 2 102.17 149.737 237.081 1 123.35 ? OM4 MLC 3001 B 1 HETATM 55 H H8 MLC . . . D 2 105.902 140.453 222.871 1 123.82 ? H8 MLC 3001 B 1 HETATM 56 H H2 MLC . . . D 2 106.82 138.087 228.603 1 111.64 ? H2 MLC 3001 B 1 HETATM 57 H HN61 MLC . . . D 2 102.783 138.339 227.792 1 125.99 ? HN61 MLC 3001 B 1 HETATM 58 H HN62 MLC . . . D 2 102.424 138.801 226.422 1 126.1 ? HN62 MLC 3001 B 1 HETATM 59 H H1' MLC . . . D 2 108.841 139.863 224.841 1 115.38 ? H1' MLC 3001 B 1 HETATM 60 H H2' MLC . . . D 2 107.855 138.851 222.411 1 119.44 ? H2' MLC 3001 B 1 HETATM 61 H HO2 MLC . . . D 2 110.223 138.039 223.163 1 116.05 ? HO2 MLC 3001 B 1 HETATM 62 H H3' MLC . . . D 2 109.36 139.632 221.234 1 118.51 ? H3' MLC 3001 B 1 HETATM 63 H H4' MLC . . . D 2 109.502 142.063 222.167 1 113.33 ? H4' MLC 3001 B 1 HETATM 64 H "H5'1" MLC . . . D 2 107.01 142.25 221.792 1 121.23 ? "H5'1" MLC 3001 B 1 HETATM 65 H "H5'2" MLC . . . D 2 107.177 140.772 221.252 1 121.67 ? "H5'2" MLC 3001 B 1 HETATM 66 H HPB1 MLC . . . D 2 104.78 144.784 221.998 1 122.89 ? HPB1 MLC 3001 B 1 HETATM 67 H HPB2 MLC . . . D 2 104.831 143.727 223.176 1 121.87 ? HPB2 MLC 3001 B 1 HETATM 68 H HP7 MLC . . . D 2 104.714 146.424 223.622 1 118.55 ? HP7 MLC 3001 B 1 HETATM 69 H HP91 MLC . . . D 2 103.601 144.636 225.336 1 121.28 ? HP91 MLC 3001 B 1 HETATM 70 H HP92 MLC . . . D 2 103.02 143.372 224.585 1 122.61 ? HP92 MLC 3001 B 1 HETATM 71 H HP93 MLC . . . D 2 102.055 144.551 225.004 1 125.11 ? HP93 MLC 3001 B 1 HETATM 72 H HP81 MLC . . . D 2 101.304 145.744 222.838 1 127.38 ? HP81 MLC 3001 B 1 HETATM 73 H HP82 MLC . . . D 2 101.441 144.191 222.573 1 128.97 ? HP82 MLC 3001 B 1 HETATM 74 H HP83 MLC . . . D 2 102.1 145.226 221.573 1 128.54 ? HP83 MLC 3001 B 1 HETATM 75 H HP3 MLC . . . D 2 103.028 147.865 222.545 1 120.51 ? HP3 MLC 3001 B 1 HETATM 76 H HP2 MLC . . . D 2 101.242 146.48 224.684 1 128.34 ? HP2 MLC 3001 B 1 HETATM 77 H HP51 MLC . . . D 2 100.238 147.549 226.342 1 127.31 ? HP51 MLC 3001 B 1 HETATM 78 H HP52 MLC . . . D 2 101.24 148.731 226.052 1 123.73 ? HP52 MLC 3001 B 1 HETATM 79 H HP41 MLC . . . D 2 102.831 147.289 227.413 1 122.85 ? HP41 MLC 3001 B 1 HETATM 80 H HP42 MLC . . . D 2 101.467 146.764 228.035 1 124.24 ? HP42 MLC 3001 B 1 HETATM 81 H HP1 MLC . . . D 2 100.651 148.103 229.977 1 119.09 ? HP1 MLC 3001 B 1 HETATM 82 H HP21 MLC . . . D 2 100.172 150.563 230.161 1 120.66 ? HP21 MLC 3001 B 1 HETATM 83 H HP22 MLC . . . D 2 101.75 150.623 230.231 1 117.61 ? HP22 MLC 3001 B 1 HETATM 84 H HP11 MLC . . . D 2 99.984 149.838 232.242 1 121.02 ? HP11 MLC 3001 B 1 HETATM 85 H HP12 MLC . . . D 2 101.337 150.635 232.388 1 118.23 ? HP12 MLC 3001 B 1 HETATM 86 H HM21 MLC . . . D 2 103.72 148.333 235.572 1 114.14 ? HM21 MLC 3001 B 1 HETATM 87 H HM22 MLC . . . D 2 102.353 147.618 235.207 1 117.36 ? HM22 MLC 3001 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 87 #