data_9CTL # _model_server_result.job_id sQ17KAd7rSTBhyZJvH5t6Q _model_server_result.datetime_utc '2025-03-05 22:47:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ctl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3001}' # _entry.id 9CTL # _exptl.entry_id 9CTL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 853.58 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONYL-COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CTL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 2240 A ASP 2240 1_555 A N 4HH 2241 A 4HH 2441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A N LEU 2242 A LEU 2242 1_555 A C 4HH 2241 A 4HH 2441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ASP 2240 B ASP 2240 1_555 B N 4HH 2241 B 4HH 2241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C 4HH 2241 B 4HH 2241 1_555 B N LEU 2242 B LEU 2242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C24 H38 N7 O19 P3 S' _chem_comp.formula_weight 853.58 _chem_comp.id MLC _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 MLC sing 290 n y C8 N7 MLC doub 291 n y C8 H8 MLC sing 292 n n N9 C4 MLC sing 293 n y N9 C1' MLC sing 294 n n C4 C5 MLC sing 295 n y C4 N3 MLC doub 296 n y C5 N7 MLC sing 297 n y C5 C6 MLC doub 298 n y N3 C2 MLC sing 299 n y C2 N1 MLC doub 300 n y C2 H2 MLC sing 301 n n N1 C6 MLC sing 302 n y C6 N6 MLC sing 303 n n N6 HN61 MLC sing 304 n n N6 HN62 MLC sing 305 n n C1' C2' MLC sing 306 n n C1' O4' MLC sing 307 n n C1' H1' MLC sing 308 n n C2' O2' MLC sing 309 n n C2' C3' MLC sing 310 n n C2' H2' MLC sing 311 n n O2' HO2 MLC sing 312 n n C3' O3' MLC sing 313 n n C3' C4' MLC sing 314 n n C3' H3' MLC sing 315 n n O3' P3 MLC sing 316 n n C4' O4' MLC sing 317 n n C4' C5' MLC sing 318 n n C4' H4' MLC sing 319 n n C5' O5' MLC sing 320 n n C5' "H5'1" MLC sing 321 n n C5' "H5'2" MLC sing 322 n n O5' P1 MLC sing 323 n n P1 O11 MLC doub 324 n n P1 O12 MLC sing 325 n n P1 O6 MLC sing 326 n n O12 H12 MLC sing 327 n n O6 P2 MLC sing 328 n n P2 O21 MLC doub 329 n n P2 O22 MLC sing 330 n n P2 O7 MLC sing 331 n n O22 H22 MLC sing 332 n n O7 CPB MLC sing 333 n n CPB CPA MLC sing 334 n n CPB HPB1 MLC sing 335 n n CPB HPB2 MLC sing 336 n n CPA CP7 MLC sing 337 n n CPA CP9 MLC sing 338 n n CPA CP8 MLC sing 339 n n CP7 OP3 MLC sing 340 n n CP7 CP6 MLC sing 341 n n CP7 HP7 MLC sing 342 n n CP9 HP91 MLC sing 343 n n CP9 HP92 MLC sing 344 n n CP9 HP93 MLC sing 345 n n CP8 HP81 MLC sing 346 n n CP8 HP82 MLC sing 347 n n CP8 HP83 MLC sing 348 n n OP3 HP3 MLC sing 349 n n CP6 OP2 MLC doub 350 n n CP6 NP2 MLC sing 351 n n NP2 CP5 MLC sing 352 n n NP2 HP2 MLC sing 353 n n CP5 CP4 MLC sing 354 n n CP5 HP51 MLC sing 355 n n CP5 HP52 MLC sing 356 n n CP4 CP3 MLC sing 357 n n CP4 HP41 MLC sing 358 n n CP4 HP42 MLC sing 359 n n CP3 OP1 MLC doub 360 n n CP3 NP1 MLC sing 361 n n NP1 CP2 MLC sing 362 n n NP1 HP1 MLC sing 363 n n CP2 CP1 MLC sing 364 n n CP2 HP21 MLC sing 365 n n CP2 HP22 MLC sing 366 n n CP1 S MLC sing 367 n n CP1 HP11 MLC sing 368 n n CP1 HP12 MLC sing 369 n n S CM1 MLC sing 370 n n P3 O31 MLC sing 371 n n P3 O32 MLC sing 372 n n P3 O33 MLC doub 373 n n O31 H31 MLC sing 374 n n O32 H32 MLC sing 375 n n CM1 CM2 MLC sing 376 n n CM1 OM2 MLC doub 377 n n CM2 CM3 MLC sing 378 n n CM2 HM21 MLC sing 379 n n CM2 HM22 MLC sing 380 n n CM3 OM3 MLC sing 381 n n CM3 OM4 MLC doub 382 n n OM3 HO3 MLC sing 383 n n # _atom_sites.entry_id 9CTL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLC A 1 3001 3001 MLC MLC . D 3 NAP A 1 5001 5001 NAP NAP . E 2 MLC B 1 3001 3001 MLC MLC . F 3 NAP B 1 5001 5001 NAP NAP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 MLC . . . E 2 143.726 236.559 122.622 1 443.89 ? C8 MLC 3001 B 1 HETATM 2 N N9 MLC . . . E 2 143.351 236.886 123.869 1 443.89 ? N9 MLC 3001 B 1 HETATM 3 C C4 MLC . . . E 2 142.802 238.123 123.826 1 443.89 ? C4 MLC 3001 B 1 HETATM 4 C C5 MLC . . . E 2 142.837 238.551 122.548 1 443.89 ? C5 MLC 3001 B 1 HETATM 5 N N7 MLC . . . E 2 143.406 237.587 121.802 1 443.89 ? N7 MLC 3001 B 1 HETATM 6 N N3 MLC . . . E 2 142.278 238.908 124.78 1 443.89 ? N3 MLC 3001 B 1 HETATM 7 C C2 MLC . . . E 2 141.78 240.132 124.454 1 443.89 ? C2 MLC 3001 B 1 HETATM 8 N N1 MLC . . . E 2 141.812 240.573 123.164 1 443.89 ? N1 MLC 3001 B 1 HETATM 9 C C6 MLC . . . E 2 142.33 239.799 122.224 1 443.89 ? C6 MLC 3001 B 1 HETATM 10 N N6 MLC . . . E 2 142.198 240.579 120.986 1 443.89 ? N6 MLC 3001 B 1 HETATM 11 C C1' MLC . . . E 2 143.526 236.084 124.949 1 443.89 ? C1' MLC 3001 B 1 HETATM 12 C C2' MLC . . . E 2 142.668 234.813 124.864 1 443.89 ? C2' MLC 3001 B 1 HETATM 13 O O2' MLC . . . E 2 141.435 234.964 125.684 1 443.89 ? O2' MLC 3001 B 1 HETATM 14 C C3' MLC . . . E 2 143.44 233.861 125.374 1 443.89 ? C3' MLC 3001 B 1 HETATM 15 O O3' MLC . . . E 2 143.3 233.833 126.82 1 443.89 ? O3' MLC 3001 B 1 HETATM 16 C C4' MLC . . . E 2 144.961 234.272 124.958 1 443.89 ? C4' MLC 3001 B 1 HETATM 17 O O4' MLC . . . E 2 145.016 235.57 125.013 1 443.89 ? O4' MLC 3001 B 1 HETATM 18 C C5' MLC . . . E 2 145.262 233.803 123.539 1 443.89 ? C5' MLC 3001 B 1 HETATM 19 O O5' MLC . . . E 2 145.799 232.511 123.565 1 443.89 ? O5' MLC 3001 B 1 HETATM 20 P P1 MLC . . . E 2 146.61 231.978 122.221 1 443.89 ? P1 MLC 3001 B 1 HETATM 21 O O11 MLC . . . E 2 145.632 231.303 121.281 1 443.89 ? O11 MLC 3001 B 1 HETATM 22 O O12 MLC . . . E 2 147.67 230.99 122.632 1 443.89 ? O12 MLC 3001 B 1 HETATM 23 O O6 MLC . . . E 2 147.328 233.276 121.448 1 443.89 ? O6 MLC 3001 B 1 HETATM 24 P P2 MLC . . . E 2 146.768 233.923 120.005 1 443.89 ? P2 MLC 3001 B 1 HETATM 25 O O21 MLC . . . E 2 145.288 233.634 119.866 1 443.89 ? O21 MLC 3001 B 1 HETATM 26 O O22 MLC . . . E 2 147.51 233.289 118.854 1 443.89 ? O22 MLC 3001 B 1 HETATM 27 O O7 MLC . . . E 2 147.019 235.573 119.983 1 443.89 ? O7 MLC 3001 B 1 HETATM 28 C CPB MLC . . . E 2 147.915 236.151 120.936 1 443.89 ? CPB MLC 3001 B 1 HETATM 29 C CPA MLC . . . E 2 148.747 237.268 120.257 1 443.89 ? CPA MLC 3001 B 1 HETATM 30 C CP7 MLC . . . E 2 150.173 237.275 120.904 1 443.89 ? CP7 MLC 3001 B 1 HETATM 31 C CP9 MLC . . . E 2 148.021 238.612 120.454 1 443.89 ? CP9 MLC 3001 B 1 HETATM 32 C CP8 MLC . . . E 2 148.863 236.946 118.742 1 443.89 ? CP8 MLC 3001 B 1 HETATM 33 O OP3 MLC . . . E 2 150.938 236.307 120.284 1 443.89 ? OP3 MLC 3001 B 1 HETATM 34 C CP6 MLC . . . E 2 150.908 238.633 120.779 1 443.89 ? CP6 MLC 3001 B 1 HETATM 35 O OP2 MLC . . . E 2 151.63 238.977 121.651 1 443.89 ? OP2 MLC 3001 B 1 HETATM 36 N NP2 MLC . . . E 2 150.743 239.496 119.601 1 443.89 ? NP2 MLC 3001 B 1 HETATM 37 C CP5 MLC . . . E 2 151.463 240.774 119.496 1 443.89 ? CP5 MLC 3001 B 1 HETATM 38 C CP4 MLC . . . E 2 151.101 241.759 120.624 1 443.89 ? CP4 MLC 3001 B 1 HETATM 39 C CP3 MLC . . . E 2 152.351 242.631 120.884 1 443.89 ? CP3 MLC 3001 B 1 HETATM 40 O OP1 MLC . . . E 2 153.338 242.116 121.276 1 443.89 ? OP1 MLC 3001 B 1 HETATM 41 N NP1 MLC . . . E 2 152.344 244.071 120.64 1 443.89 ? NP1 MLC 3001 B 1 HETATM 42 C CP2 MLC . . . E 2 153.588 244.845 120.895 1 443.89 ? CP2 MLC 3001 B 1 HETATM 43 C CP1 MLC . . . E 2 153.31 246.281 121.344 1 443.89 ? CP1 MLC 3001 B 1 HETATM 44 S S MLC . . . E 2 151.731 246.376 122.234 1 443.89 ? S MLC 3001 B 1 HETATM 45 P P3 MLC . . . E 2 143.583 232.372 127.631 1 443.89 ? P3 MLC 3001 B 1 HETATM 46 O O31 MLC . . . E 2 142.293 231.571 127.692 1 443.89 ? O31 MLC 3001 B 1 HETATM 47 O O32 MLC . . . E 2 144.065 232.663 129.039 1 443.89 ? O32 MLC 3001 B 1 HETATM 48 O O33 MLC . . . E 2 144.636 231.575 126.89 1 443.89 ? O33 MLC 3001 B 1 HETATM 49 C CM1 MLC . . . E 2 152.067 247.119 123.883 1 443.89 ? CM1 MLC 3001 B 1 HETATM 50 C CM2 MLC . . . E 2 151.633 248.572 124.176 1 443.89 ? CM2 MLC 3001 B 1 HETATM 51 C CM3 MLC . . . E 2 152.773 249.521 123.766 1 443.89 ? CM3 MLC 3001 B 1 HETATM 52 O OM2 MLC . . . E 2 152.616 246.48 124.724 1 443.89 ? OM2 MLC 3001 B 1 HETATM 53 O OM3 MLC . . . E 2 153.64 249.141 122.925 1 443.89 ? OM3 MLC 3001 B 1 HETATM 54 O OM4 MLC . . . E 2 152.845 250.678 124.27 1 443.89 ? OM4 MLC 3001 B 1 HETATM 55 H H8 MLC . . . E 2 144.131 235.763 122.364 1 443.89 ? H8 MLC 3001 B 1 HETATM 56 H H2 MLC . . . E 2 141.404 240.725 125.063 1 443.89 ? H2 MLC 3001 B 1 HETATM 57 H HN61 MLC . . . E 2 141.889 241.382 121.014 1 443.89 ? HN61 MLC 3001 B 1 HETATM 58 H HN62 MLC . . . E 2 142.429 240.234 120.233 1 443.89 ? HN62 MLC 3001 B 1 HETATM 59 H H1' MLC . . . E 2 143.31 236.568 125.761 1 443.89 ? H1' MLC 3001 B 1 HETATM 60 H H2' MLC . . . E 2 142.444 234.606 123.944 1 443.89 ? H2' MLC 3001 B 1 HETATM 61 H HO2 MLC . . . E 2 141.49 234.468 126.373 1 443.89 ? HO2 MLC 3001 B 1 HETATM 62 H H3' MLC . . . E 2 143.21 233 124.991 1 443.89 ? H3' MLC 3001 B 1 HETATM 63 H H4' MLC . . . E 2 145.592 233.886 125.584 1 443.89 ? H4' MLC 3001 B 1 HETATM 64 H "H5'1" MLC . . . E 2 145.898 234.408 123.127 1 443.89 ? "H5'1" MLC 3001 B 1 HETATM 65 H "H5'2" MLC . . . E 2 144.443 233.795 123.022 1 443.89 ? "H5'2" MLC 3001 B 1 HETATM 66 H HPB1 MLC . . . E 2 148.513 235.466 121.273 1 443.89 ? HPB1 MLC 3001 B 1 HETATM 67 H HPB2 MLC . . . E 2 147.407 236.527 121.672 1 443.89 ? HPB2 MLC 3001 B 1 HETATM 68 H HP7 MLC . . . E 2 150.091 237.05 121.843 1 443.89 ? HP7 MLC 3001 B 1 HETATM 69 H HP91 MLC . . . E 2 148.271 238.997 121.307 1 443.89 ? HP91 MLC 3001 B 1 HETATM 70 H HP92 MLC . . . E 2 147.063 238.462 120.439 1 443.89 ? HP92 MLC 3001 B 1 HETATM 71 H HP93 MLC . . . E 2 148.259 239.222 119.739 1 443.89 ? HP93 MLC 3001 B 1 HETATM 72 H HP81 MLC . . . E 2 149.566 237.48 118.342 1 443.89 ? HP81 MLC 3001 B 1 HETATM 73 H HP82 MLC . . . E 2 148.02 237.145 118.305 1 443.89 ? HP82 MLC 3001 B 1 HETATM 74 H HP83 MLC . . . E 2 149.071 236.005 118.628 1 443.89 ? HP83 MLC 3001 B 1 HETATM 75 H HP3 MLC . . . E 2 151.643 236.663 119.97 1 443.89 ? HP3 MLC 3001 B 1 HETATM 76 H HP2 MLC . . . E 2 150.226 239.25 118.961 1 443.89 ? HP2 MLC 3001 B 1 HETATM 77 H HP51 MLC . . . E 2 151.256 241.184 118.642 1 443.89 ? HP51 MLC 3001 B 1 HETATM 78 H HP52 MLC . . . E 2 152.415 240.596 119.535 1 443.89 ? HP52 MLC 3001 B 1 HETATM 79 H HP41 MLC . . . E 2 150.862 241.274 121.43 1 443.89 ? HP41 MLC 3001 B 1 HETATM 80 H HP42 MLC . . . E 2 150.361 242.32 120.345 1 443.89 ? HP42 MLC 3001 B 1 HETATM 81 H HP1 MLC . . . E 2 151.636 244.462 120.347 1 443.89 ? HP1 MLC 3001 B 1 HETATM 82 H HP21 MLC . . . E 2 154.109 244.872 120.079 1 443.89 ? HP21 MLC 3001 B 1 HETATM 83 H HP22 MLC . . . E 2 154.099 244.398 121.587 1 443.89 ? HP22 MLC 3001 B 1 HETATM 84 H HP11 MLC . . . E 2 153.284 246.865 120.571 1 443.89 ? HP11 MLC 3001 B 1 HETATM 85 H HP12 MLC . . . E 2 154.023 246.571 121.934 1 443.89 ? HP12 MLC 3001 B 1 HETATM 86 H HM21 MLC . . . E 2 151.448 248.674 125.122 1 443.89 ? HM21 MLC 3001 B 1 HETATM 87 H HM22 MLC . . . E 2 150.836 248.782 123.665 1 443.89 ? HM22 MLC 3001 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 65 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 87 #