data_9CTL
#
_model_server_result.job_id            rq2vf48KEGj1YHMUPPUWdA 
_model_server_result.datetime_utc      '2025-03-05 22:39:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ctl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":5001}' 
#
_entry.id    9CTL 
#
_exptl.entry_id    9CTL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CTL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CTL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASP 2240 A ASP 2240 1_555 A N 4HH 2241 A 4HH 2441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A N LEU 2242 A LEU 2242 1_555 A C 4HH 2241 A 4HH 2441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C ASP 2240 B ASP 2240 1_555 B N 4HH 2241 B 4HH 2241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C 4HH 2241 B 4HH 2241 1_555 B N LEU 2242 B LEU 2242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 384 n n 
PA O2A NAP sing 385 n n 
PA O5B NAP sing 386 n n 
PA O3 NAP sing 387 n n 
O2A HOA2 NAP sing 388 n n 
O5B C5B NAP sing 389 n n 
C5B C4B NAP sing 390 n n 
C5B H51A NAP sing 391 n n 
C5B H52A NAP sing 392 n n 
C4B O4B NAP sing 393 n n 
C4B C3B NAP sing 394 n n 
C4B H4B NAP sing 395 n n 
O4B C1B NAP sing 396 n n 
C3B O3B NAP sing 397 n n 
C3B C2B NAP sing 398 n n 
C3B H3B NAP sing 399 n n 
O3B HO3A NAP sing 400 n n 
C2B O2B NAP sing 401 n n 
C2B C1B NAP sing 402 n n 
C2B H2B NAP sing 403 n n 
O2B P2B NAP sing 404 n n 
C1B N9A NAP sing 405 n n 
C1B H1B NAP sing 406 n n 
N9A C8A NAP sing 407 n y 
N9A C4A NAP sing 408 n y 
C8A N7A NAP doub 409 n y 
C8A H8A NAP sing 410 n n 
N7A C5A NAP sing 411 n y 
C5A C6A NAP sing 412 n y 
C5A C4A NAP doub 413 n y 
C6A N6A NAP sing 414 n n 
C6A N1A NAP doub 415 n y 
N6A H61A NAP sing 416 n n 
N6A H62A NAP sing 417 n n 
N1A C2A NAP sing 418 n y 
C2A N3A NAP doub 419 n y 
C2A H2A NAP sing 420 n n 
N3A C4A NAP sing 421 n y 
O3 PN NAP sing 422 n n 
PN O1N NAP doub 423 n n 
PN O2N NAP sing 424 n n 
PN O5D NAP sing 425 n n 
O5D C5D NAP sing 426 n n 
C5D C4D NAP sing 427 n n 
C5D H51N NAP sing 428 n n 
C5D H52N NAP sing 429 n n 
C4D O4D NAP sing 430 n n 
C4D C3D NAP sing 431 n n 
C4D H4D NAP sing 432 n n 
O4D C1D NAP sing 433 n n 
C3D O3D NAP sing 434 n n 
C3D C2D NAP sing 435 n n 
C3D H3D NAP sing 436 n n 
O3D HO3N NAP sing 437 n n 
C2D O2D NAP sing 438 n n 
C2D C1D NAP sing 439 n n 
C2D H2D NAP sing 440 n n 
O2D HO2N NAP sing 441 n n 
C1D N1N NAP sing 442 n n 
C1D H1D NAP sing 443 n n 
N1N C2N NAP sing 444 n y 
N1N C6N NAP doub 445 n y 
C2N C3N NAP doub 446 n y 
C2N H2N NAP sing 447 n n 
C3N C7N NAP sing 448 n n 
C3N C4N NAP sing 449 n y 
C7N O7N NAP doub 450 n n 
C7N N7N NAP sing 451 n n 
N7N H71N NAP sing 452 n n 
N7N H72N NAP sing 453 n n 
C4N C5N NAP doub 454 n y 
C4N H4N NAP sing 455 n n 
C5N C6N NAP sing 456 n y 
C5N H5N NAP sing 457 n n 
C6N H6N NAP sing 458 n n 
P2B O1X NAP doub 459 n n 
P2B O2X NAP sing 460 n n 
P2B O3X NAP sing 461 n n 
O2X HOP2 NAP sing 462 n n 
O3X HOP3 NAP sing 463 n n 
#
_atom_sites.entry_id                     9CTL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MLC A 1 3001 3001 MLC MLC . 
D 3 NAP A 1 5001 5001 NAP NAP . 
E 2 MLC B 1 3001 3001 MLC MLC . 
F 3 NAP B 1 5001 5001 NAP NAP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 144.151 134.96 205.65 1 69.06 ? PA NAP 5001 A 1 
HETATM 2 O O1A NAP . . . D 3 143.993 134.001 204.516 1 69.06 ? O1A NAP 5001 A 1 
HETATM 3 O O2A NAP . . . D 3 144.9 134.584 206.889 1 69.06 ? O2A NAP 5001 A 1 
HETATM 4 O O5B NAP . . . D 3 142.646 135.479 206.034 1 69.06 ? O5B NAP 5001 A 1 
HETATM 5 C C5B NAP . . . D 3 141.943 134.853 207.083 1 69.06 ? C5B NAP 5001 A 1 
HETATM 6 C C4B NAP . . . D 3 141.107 133.745 206.459 1 69.06 ? C4B NAP 5001 A 1 
HETATM 7 O O4B NAP . . . D 3 140.746 132.774 207.436 1 69.06 ? O4B NAP 5001 A 1 
HETATM 8 C C3B NAP . . . D 3 139.8 134.261 205.834 1 69.06 ? C3B NAP 5001 A 1 
HETATM 9 O O3B NAP . . . D 3 139.843 134.334 204.438 1 69.06 ? O3B NAP 5001 A 1 
HETATM 10 C C2B NAP . . . D 3 138.73 133.255 206.305 1 69.06 ? C2B NAP 5001 A 1 
HETATM 11 O O2B NAP . . . D 3 138.233 132.663 205.151 1 69.06 ? O2B NAP 5001 A 1 
HETATM 12 C C1B NAP . . . D 3 139.501 132.216 207.122 1 69.06 ? C1B NAP 5001 A 1 
HETATM 13 N N9A NAP . . . D 3 138.778 131.736 208.293 1 69.06 ? N9A NAP 5001 A 1 
HETATM 14 C C8A NAP . . . D 3 138.223 132.388 209.364 1 69.06 ? C8A NAP 5001 A 1 
HETATM 15 N N7A NAP . . . D 3 137.642 131.588 210.212 1 69.06 ? N7A NAP 5001 A 1 
HETATM 16 C C5A NAP . . . D 3 137.812 130.339 209.675 1 69.06 ? C5A NAP 5001 A 1 
HETATM 17 C C6A NAP . . . D 3 137.428 129.051 210.086 1 69.06 ? C6A NAP 5001 A 1 
HETATM 18 N N6A NAP . . . D 3 136.748 128.823 211.211 1 69.06 ? N6A NAP 5001 A 1 
HETATM 19 N N1A NAP . . . D 3 137.763 128.017 209.308 1 69.06 ? N1A NAP 5001 A 1 
HETATM 20 C C2A NAP . . . D 3 138.44 128.243 208.186 1 69.06 ? C2A NAP 5001 A 1 
HETATM 21 N N3A NAP . . . D 3 138.853 129.396 207.699 1 69.06 ? N3A NAP 5001 A 1 
HETATM 22 C C4A NAP . . . D 3 138.513 130.414 208.486 1 69.06 ? C4A NAP 5001 A 1 
HETATM 23 O O3 NAP . . . D 3 144.852 136.371 205.184 1 69.06 ? O3 NAP 5001 A 1 
HETATM 24 P PN NAP . . . D 3 145.22 137.615 206.187 1 69.06 ? PN NAP 5001 A 1 
HETATM 25 O O1N NAP . . . D 3 144.05 137.953 207.046 1 69.06 ? O1N NAP 5001 A 1 
HETATM 26 O O2N NAP . . . D 3 145.927 138.631 205.348 1 69.06 ? O2N NAP 5001 A 1 
HETATM 27 O O5D NAP . . . D 3 146.296 136.856 207.181 1 69.06 ? O5D NAP 5001 A 1 
HETATM 28 C C5D NAP . . . D 3 146.084 136.777 208.564 1 69.06 ? C5D NAP 5001 A 1 
HETATM 29 C C4D NAP . . . D 3 147.021 135.799 209.27 1 69.06 ? C4D NAP 5001 A 1 
HETATM 30 O O4D NAP . . . D 3 148.35 136.356 209.195 1 69.06 ? O4D NAP 5001 A 1 
HETATM 31 C C3D NAP . . . D 3 146.786 135.582 210.754 1 69.06 ? C3D NAP 5001 A 1 
HETATM 32 O O3D NAP . . . D 3 147.384 134.365 211.105 1 69.06 ? O3D NAP 5001 A 1 
HETATM 33 C C2D NAP . . . D 3 147.561 136.748 211.382 1 69.06 ? C2D NAP 5001 A 1 
HETATM 34 O O2D NAP . . . D 3 148.089 136.512 212.649 1 69.06 ? O2D NAP 5001 A 1 
HETATM 35 C C1D NAP . . . D 3 148.705 136.947 210.383 1 69.06 ? C1D NAP 5001 A 1 
HETATM 36 N N1N NAP . . . D 3 148.945 138.407 210.174 1 69.06 ? N1N NAP 5001 A 1 
HETATM 37 C C2N NAP . . . D 3 148.49 139.043 209.088 1 69.06 ? C2N NAP 5001 A 1 
HETATM 38 C C3N NAP . . . D 3 148.721 140.39 208.911 1 69.06 ? C3N NAP 5001 A 1 
HETATM 39 C C7N NAP . . . D 3 148.226 141.133 207.703 1 69.06 ? C7N NAP 5001 A 1 
HETATM 40 O O7N NAP . . . D 3 147.898 142.299 207.809 1 69.06 ? O7N NAP 5001 A 1 
HETATM 41 N N7N NAP . . . D 3 148.183 140.431 206.569 1 69.06 ? N7N NAP 5001 A 1 
HETATM 42 C C4N NAP . . . D 3 149.428 141.077 209.887 1 69.06 ? C4N NAP 5001 A 1 
HETATM 43 C C5N NAP . . . D 3 149.884 140.398 211.003 1 69.06 ? C5N NAP 5001 A 1 
HETATM 44 C C6N NAP . . . D 3 149.626 139.055 211.126 1 69.06 ? C6N NAP 5001 A 1 
HETATM 45 P P2B NAP . . . D 3 136.702 133.265 204.598 1 69.06 ? P2B NAP 5001 A 1 
HETATM 46 O O1X NAP . . . D 3 135.748 132.941 205.737 1 69.06 ? O1X NAP 5001 A 1 
HETATM 47 O O2X NAP . . . D 3 137.046 134.733 204.428 1 69.06 ? O2X NAP 5001 A 1 
HETATM 48 O O3X NAP . . . D 3 136.444 132.494 203.31 1 69.06 ? O3X NAP 5001 A 1 
HETATM 49 H H51A NAP . . . D 3 141.378 135.507 207.525 1 69.06 ? H51A NAP 5001 A 1 
HETATM 50 H H52A NAP . . . D 3 142.534 134.477 207.754 1 69.06 ? H52A NAP 5001 A 1 
HETATM 51 H H4B NAP . . . D 3 141.631 133.299 205.776 1 69.06 ? H4B NAP 5001 A 1 
HETATM 52 H H3B NAP . . . D 3 139.603 135.154 206.156 1 69.06 ? H3B NAP 5001 A 1 
HETATM 53 H HO3A NAP . . . D 3 140.004 133.538 204.186 1 69.06 ? HO3A NAP 5001 A 1 
HETATM 54 H H2B NAP . . . D 3 138.029 133.68 206.822 1 69.06 ? H2B NAP 5001 A 1 
HETATM 55 H H1B NAP . . . D 3 139.645 131.419 206.588 1 69.06 ? H1B NAP 5001 A 1 
HETATM 56 H H8A NAP . . . D 3 138.268 133.311 209.468 1 69.06 ? H8A NAP 5001 A 1 
HETATM 57 H H61A NAP . . . D 3 136.17 129.393 211.491 1 69.06 ? H61A NAP 5001 A 1 
HETATM 58 H H62A NAP . . . D 3 136.872 128.105 211.669 1 69.06 ? H62A NAP 5001 A 1 
HETATM 59 H H2A NAP . . . D 3 138.646 127.488 207.683 1 69.06 ? H2A NAP 5001 A 1 
HETATM 60 H H51N NAP . . . D 3 146.18 137.643 208.982 1 69.06 ? H51N NAP 5001 A 1 
HETATM 61 H H52N NAP . . . D 3 145.163 136.496 208.682 1 69.06 ? H52N NAP 5001 A 1 
HETATM 62 H H4D NAP . . . D 3 147.041 134.955 208.793 1 69.06 ? H4D NAP 5001 A 1 
HETATM 63 H H3D NAP . . . D 3 145.843 135.598 210.98 1 69.06 ? H3D NAP 5001 A 1 
HETATM 64 H HO3N NAP . . . D 3 147.41 134.316 211.954 1 69.06 ? HO3N NAP 5001 A 1 
HETATM 65 H H2D NAP . . . D 3 147.007 137.542 211.382 1 69.06 ? H2D NAP 5001 A 1 
HETATM 66 H HO2N NAP . . . D 3 148.851 136.885 212.706 1 69.06 ? HO2N NAP 5001 A 1 
HETATM 67 H H1D NAP . . . D 3 149.543 136.597 210.723 1 69.06 ? H1D NAP 5001 A 1 
HETATM 68 H H2N NAP . . . D 3 148.024 138.527 208.47 1 69.06 ? H2N NAP 5001 A 1 
HETATM 69 H H71N NAP . . . D 3 148.42 139.608 206.521 1 69.06 ? H71N NAP 5001 A 1 
HETATM 70 H H72N NAP . . . D 3 147.91 140.802 205.842 1 69.06 ? H72N NAP 5001 A 1 
HETATM 71 H H4N NAP . . . D 3 149.595 141.987 209.791 1 69.06 ? H4N NAP 5001 A 1 
HETATM 72 H H5N NAP . . . D 3 150.362 140.831 211.672 1 69.06 ? H5N NAP 5001 A 1 
HETATM 73 H H6N NAP . . . D 3 149.914 138.556 211.856 1 69.06 ? H6N NAP 5001 A 1 
#
_model_server_stats.io_time_ms              187 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    60 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           73 
#