data_9CTO
#
_model_server_result.job_id            ItnkFw-TcOYyysojUpoJUQ 
_model_server_result.datetime_utc      '2025-03-05 22:45:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cto 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2301}' 
#
_entry.id    9CTO 
#
_exptl.entry_id    9CTO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CTO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CTO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 186 A ALA 186 1_555 A N SCY 187 A SCY 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C SCY 187 A SCY 187 1_555 A N SER 188 A SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 A OG SER 2241 A SER 2241 1_555 D P24 6VG . A 6VG 2302 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.605 ? 
covale ? covale4 B C ALA 186 B ALA 186 1_555 B N SCY 187 B SCY 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 B C SCY 187 B SCY 187 1_555 B N SER 188 B SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 B OG SER 2241 B SER 2241 1_555 F P24 6VG . B 6VG 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 284 n n 
PA O2A NDP sing 285 n n 
PA O5B NDP sing 286 n n 
PA O3 NDP sing 287 n n 
O2A HOA2 NDP sing 288 n n 
O5B C5B NDP sing 289 n n 
C5B C4B NDP sing 290 n n 
C5B H51A NDP sing 291 n n 
C5B H52A NDP sing 292 n n 
C4B O4B NDP sing 293 n n 
C4B C3B NDP sing 294 n n 
C4B H4B NDP sing 295 n n 
O4B C1B NDP sing 296 n n 
C3B O3B NDP sing 297 n n 
C3B C2B NDP sing 298 n n 
C3B H3B NDP sing 299 n n 
O3B HO3A NDP sing 300 n n 
C2B O2B NDP sing 301 n n 
C2B C1B NDP sing 302 n n 
C2B H2B NDP sing 303 n n 
O2B P2B NDP sing 304 n n 
C1B N9A NDP sing 305 n n 
C1B H1B NDP sing 306 n n 
N9A C8A NDP sing 307 n y 
N9A C4A NDP sing 308 n y 
C8A N7A NDP doub 309 n y 
C8A H8A NDP sing 310 n n 
N7A C5A NDP sing 311 n y 
C5A C6A NDP sing 312 n y 
C5A C4A NDP doub 313 n y 
C6A N6A NDP sing 314 n n 
C6A N1A NDP doub 315 n y 
N6A H61A NDP sing 316 n n 
N6A H62A NDP sing 317 n n 
N1A C2A NDP sing 318 n y 
C2A N3A NDP doub 319 n y 
C2A H2A NDP sing 320 n n 
N3A C4A NDP sing 321 n y 
O3 PN NDP sing 322 n n 
PN O1N NDP doub 323 n n 
PN O2N NDP sing 324 n n 
PN O5D NDP sing 325 n n 
O2N H21N NDP sing 326 n n 
O5D C5D NDP sing 327 n n 
C5D C4D NDP sing 328 n n 
C5D H51N NDP sing 329 n n 
C5D H52N NDP sing 330 n n 
C4D O4D NDP sing 331 n n 
C4D C3D NDP sing 332 n n 
C4D H4D NDP sing 333 n n 
O4D C1D NDP sing 334 n n 
C3D O3D NDP sing 335 n n 
C3D C2D NDP sing 336 n n 
C3D H3D NDP sing 337 n n 
O3D HO3N NDP sing 338 n n 
C2D O2D NDP sing 339 n n 
C2D C1D NDP sing 340 n n 
C2D H2D NDP sing 341 n n 
O2D HO2N NDP sing 342 n n 
C1D N1N NDP sing 343 n n 
C1D H1D NDP sing 344 n n 
N1N C2N NDP sing 345 n n 
N1N C6N NDP sing 346 n n 
C2N C3N NDP doub 347 n n 
C2N H2N NDP sing 348 n n 
C3N C7N NDP sing 349 n n 
C3N C4N NDP sing 350 n n 
C7N O7N NDP doub 351 n n 
C7N N7N NDP sing 352 n n 
N7N H71N NDP sing 353 n n 
N7N H72N NDP sing 354 n n 
C4N C5N NDP sing 355 n n 
C4N H41N NDP sing 356 n n 
C4N H42N NDP sing 357 n n 
C5N C6N NDP doub 358 n n 
C5N H5N NDP sing 359 n n 
C6N H6N NDP sing 360 n n 
P2B O1X NDP doub 361 n n 
P2B O2X NDP sing 362 n n 
P2B O3X NDP sing 363 n n 
O2X HOP2 NDP sing 364 n n 
O3X HOP3 NDP sing 365 n n 
#
_atom_sites.entry_id                     9CTO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 2301 2301 NDP NDP . 
D 3 6VG A 1 2302 2241 6VG 4HH . 
E 2 NDP B 1 2301 2301 NDP NDP . 
F 3 6VG B 1 2302 2241 6VG 4HH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 134.514 131.699 200.642 1 117.56 ? PA NDP 2301 A 1 
HETATM 2 O O1A NDP . . . C 2 133.535 132.2 201.644 1 111.97 ? O1A NDP 2301 A 1 
HETATM 3 O O2A NDP . . . C 2 134.957 132.548 199.488 1 112.1 ? O2A NDP 2301 A 1 
HETATM 4 O O5B NDP . . . C 2 134.018 130.238 200.088 1 100.29 ? O5B NDP 2301 A 1 
HETATM 5 C C5B NDP . . . C 2 134.393 129.345 201.086 1 90.28 ? C5B NDP 2301 A 1 
HETATM 6 C C4B NDP . . . C 2 133.782 128.004 200.77 1 92.71 ? C4B NDP 2301 A 1 
HETATM 7 O O4B NDP . . . C 2 133.509 127.307 201.951 1 89.24 ? O4B NDP 2301 A 1 
HETATM 8 C C3B NDP . . . C 2 132.452 128.239 200.034 1 101.69 ? C3B NDP 2301 A 1 
HETATM 9 O O3B NDP . . . C 2 132.606 127.976 198.68 1 105.93 ? O3B NDP 2301 A 1 
HETATM 10 C C2B NDP . . . C 2 131.521 127.161 200.651 1 92.14 ? C2B NDP 2301 A 1 
HETATM 11 O O2B NDP . . . C 2 130.988 126.341 199.755 1 100.88 ? O2B NDP 2301 A 1 
HETATM 12 C C1B NDP . . . C 2 132.532 126.371 201.57 1 89.11 ? C1B NDP 2301 A 1 
HETATM 13 N N9A NDP . . . C 2 131.872 125.864 202.773 1 88.68 ? N9A NDP 2301 A 1 
HETATM 14 C C8A NDP . . . C 2 131.414 126.585 203.884 1 92.35 ? C8A NDP 2301 A 1 
HETATM 15 N N7A NDP . . . C 2 130.839 125.808 204.821 1 86.97 ? N7A NDP 2301 A 1 
HETATM 16 C C5A NDP . . . C 2 130.926 124.519 204.284 1 88.46 ? C5A NDP 2301 A 1 
HETATM 17 C C6A NDP . . . C 2 130.505 123.274 204.767 1 91.15 ? C6A NDP 2301 A 1 
HETATM 18 N N6A NDP . . . C 2 129.885 123.174 205.993 1 86.25 ? N6A NDP 2301 A 1 
HETATM 19 N N1A NDP . . . C 2 130.704 122.126 204.053 1 93.88 ? N1A NDP 2301 A 1 
HETATM 20 C C2A NDP . . . C 2 131.333 122.301 202.844 1 86.53 ? C2A NDP 2301 A 1 
HETATM 21 N N3A NDP . . . C 2 131.787 123.413 202.246 1 84.09 ? N3A NDP 2301 A 1 
HETATM 22 C C4A NDP . . . C 2 131.566 124.538 203.007 1 87.68 ? C4A NDP 2301 A 1 
HETATM 23 O O3 NDP . . . C 2 135.837 131.493 201.585 1 103.57 ? O3 NDP 2301 A 1 
HETATM 24 P PN NDP . . . C 2 137.095 131.396 200.632 1 101.68 ? PN NDP 2301 A 1 
HETATM 25 O O1N NDP . . . C 2 136.685 130.677 199.409 1 106.07 ? O1N NDP 2301 A 1 
HETATM 26 O O2N NDP . . . C 2 137.966 132.632 200.629 1 85.21 ? O2N NDP 2301 A 1 
HETATM 27 O O5D NDP . . . C 2 138.187 130.208 201.331 1 98.12 ? O5D NDP 2301 A 1 
HETATM 28 C C5D NDP . . . C 2 139.019 130.896 202.167 1 91.61 ? C5D NDP 2301 A 1 
HETATM 29 C C4D NDP . . . C 2 139.752 129.898 203.039 1 87.33 ? C4D NDP 2301 A 1 
HETATM 30 O O4D NDP . . . C 2 141.006 130.458 203.451 1 89.86 ? O4D NDP 2301 A 1 
HETATM 31 C C3D NDP . . . C 2 138.937 129.676 204.325 1 84.12 ? C3D NDP 2301 A 1 
HETATM 32 O O3D NDP . . . C 2 139.278 128.442 204.854 1 83.34 ? O3D NDP 2301 A 1 
HETATM 33 C C2D NDP . . . C 2 139.429 130.802 205.215 1 85.78 ? C2D NDP 2301 A 1 
HETATM 34 O O2D NDP . . . C 2 139.405 130.472 206.566 1 86.9 ? O2D NDP 2301 A 1 
HETATM 35 C C1D NDP . . . C 2 140.91 130.938 204.783 1 86.09 ? C1D NDP 2301 A 1 
HETATM 36 N N1N NDP . . . C 2 141.284 132.354 204.793 1 86.58 ? N1N NDP 2301 A 1 
HETATM 37 C C2N NDP . . . C 2 140.91 133.153 203.748 1 90.86 ? C2N NDP 2301 A 1 
HETATM 38 C C3N NDP . . . C 2 141.029 134.5 203.828 1 88.46 ? C3N NDP 2301 A 1 
HETATM 39 C C7N NDP . . . C 2 140.604 135.254 202.667 1 95.47 ? C7N NDP 2301 A 1 
HETATM 40 O O7N NDP . . . C 2 141.084 136.34 202.33 1 93.09 ? O7N NDP 2301 A 1 
HETATM 41 N N7N NDP . . . C 2 139.586 134.715 201.901 1 102.47 ? N7N NDP 2301 A 1 
HETATM 42 C C4N NDP . . . C 2 141.56 135.18 205.03 1 90.15 ? C4N NDP 2301 A 1 
HETATM 43 C C5N NDP . . . C 2 142.166 134.222 205.984 1 90.04 ? C5N NDP 2301 A 1 
HETATM 44 C C6N NDP . . . C 2 142.02 132.901 205.853 1 87.79 ? C6N NDP 2301 A 1 
HETATM 45 P P2B NDP . . . C 2 129.186 126.595 199.625 1 111.38 ? P2B NDP 2301 A 1 
HETATM 46 O O1X NDP . . . C 2 129.223 128.091 199.625 1 100.54 ? O1X NDP 2301 A 1 
HETATM 47 O O2X NDP . . . C 2 128.633 125.901 200.873 1 92.28 ? O2X NDP 2301 A 1 
HETATM 48 O O3X NDP . . . C 2 128.986 125.906 198.304 1 108.05 ? O3X NDP 2301 A 1 
HETATM 49 H H51A NDP . . . C 2 134.158 129.662 201.974 1 93.76 ? H51A NDP 2301 A 1 
HETATM 50 H H52A NDP . . . C 2 135.357 129.25 201.076 1 92.29 ? H52A NDP 2301 A 1 
HETATM 51 H H4B NDP . . . C 2 134.403 127.473 200.247 1 91.84 ? H4B NDP 2301 A 1 
HETATM 52 H H3B NDP . . . C 2 132.077 129.117 200.201 1 100.3 ? H3B NDP 2301 A 1 
HETATM 53 H HO3A NDP . . . C 2 132.415 127.153 198.583 1 96.8 ? HO3A NDP 2301 A 1 
HETATM 54 H H2B NDP . . . C 2 130.897 127.618 201.24 1 93.34 ? H2B NDP 2301 A 1 
HETATM 55 H H1B NDP . . . C 2 132.929 125.619 201.108 1 90.32 ? H1B NDP 2301 A 1 
HETATM 56 H H8A NDP . . . C 2 131.517 127.511 203.939 1 91.7 ? H8A NDP 2301 A 1 
HETATM 57 H H61A NDP . . . C 2 129.658 122.4 206.292 1 90.28 ? H61A NDP 2301 A 1 
HETATM 58 H H62A NDP . . . C 2 129.732 123.886 206.449 1 89.95 ? H62A NDP 2301 A 1 
HETATM 59 H H2A NDP . . . C 2 131.458 121.508 202.369 1 86.22 ? H2A NDP 2301 A 1 
HETATM 60 H H51N NDP . . . C 2 138.506 131.481 202.746 1 92.36 ? H51N NDP 2301 A 1 
HETATM 61 H H52N NDP . . . C 2 139.633 131.479 201.694 1 90.26 ? H52N NDP 2301 A 1 
HETATM 62 H H4D NDP . . . C 2 139.892 129.076 202.54 1 85.34 ? H4D NDP 2301 A 1 
HETATM 63 H H3D NDP . . . C 2 137.985 129.763 204.15 1 86.44 ? H3D NDP 2301 A 1 
HETATM 64 H HO3N NDP . . . C 2 139.512 128.593 205.657 1 82.26 ? HO3N NDP 2301 A 1 
HETATM 65 H H2D NDP . . . C 2 138.945 131.618 205.042 1 88.45 ? H2D NDP 2301 A 1 
HETATM 66 H HO2N NDP . . . C 2 140.079 130.862 206.908 1 85 ? HO2N NDP 2301 A 1 
HETATM 67 H H1D NDP . . . C 2 141.519 130.442 205.35 1 83.25 ? H1D NDP 2301 A 1 
HETATM 68 H H2N NDP . . . C 2 140.575 132.747 202.988 1 91.13 ? H2N NDP 2301 A 1 
HETATM 69 H H71N NDP . . . C 2 139.31 135.138 201.207 1 101.83 ? H71N NDP 2301 A 1 
HETATM 70 H H72N NDP . . . C 2 139.217 133.964 202.095 1 97.96 ? H72N NDP 2301 A 1 
HETATM 71 H H41N NDP . . . C 2 140.859 135.674 205.479 1 90.92 ? H41N NDP 2301 A 1 
HETATM 72 H H42N NDP . . . C 2 142.223 135.838 204.765 1 87.7 ? H42N NDP 2301 A 1 
HETATM 73 H H5N NDP . . . C 2 142.659 134.558 206.698 1 84.83 ? H5N NDP 2301 A 1 
HETATM 74 H H6N NDP . . . C 2 142.397 132.299 206.45 1 83.45 ? H6N NDP 2301 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    85 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           74 
#