data_9CTO # _model_server_result.job_id f84MI2h6hz8acei6Q2oxWA _model_server_result.datetime_utc '2025-03-05 22:54:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cto # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2301}' # _entry.id 9CTO # _exptl.entry_id 9CTO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CTO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CTO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 186 A ALA 186 1_555 A N SCY 187 A SCY 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C SCY 187 A SCY 187 1_555 A N SER 188 A SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A OG SER 2241 A SER 2241 1_555 D P24 6VG . A 6VG 2302 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.605 ? covale ? covale4 B C ALA 186 B ALA 186 1_555 B N SCY 187 B SCY 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 B C SCY 187 B SCY 187 1_555 B N SER 188 B SER 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B OG SER 2241 B SER 2241 1_555 F P24 6VG . B 6VG 2302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 284 n n PA O2A NDP sing 285 n n PA O5B NDP sing 286 n n PA O3 NDP sing 287 n n O2A HOA2 NDP sing 288 n n O5B C5B NDP sing 289 n n C5B C4B NDP sing 290 n n C5B H51A NDP sing 291 n n C5B H52A NDP sing 292 n n C4B O4B NDP sing 293 n n C4B C3B NDP sing 294 n n C4B H4B NDP sing 295 n n O4B C1B NDP sing 296 n n C3B O3B NDP sing 297 n n C3B C2B NDP sing 298 n n C3B H3B NDP sing 299 n n O3B HO3A NDP sing 300 n n C2B O2B NDP sing 301 n n C2B C1B NDP sing 302 n n C2B H2B NDP sing 303 n n O2B P2B NDP sing 304 n n C1B N9A NDP sing 305 n n C1B H1B NDP sing 306 n n N9A C8A NDP sing 307 n y N9A C4A NDP sing 308 n y C8A N7A NDP doub 309 n y C8A H8A NDP sing 310 n n N7A C5A NDP sing 311 n y C5A C6A NDP sing 312 n y C5A C4A NDP doub 313 n y C6A N6A NDP sing 314 n n C6A N1A NDP doub 315 n y N6A H61A NDP sing 316 n n N6A H62A NDP sing 317 n n N1A C2A NDP sing 318 n y C2A N3A NDP doub 319 n y C2A H2A NDP sing 320 n n N3A C4A NDP sing 321 n y O3 PN NDP sing 322 n n PN O1N NDP doub 323 n n PN O2N NDP sing 324 n n PN O5D NDP sing 325 n n O2N H21N NDP sing 326 n n O5D C5D NDP sing 327 n n C5D C4D NDP sing 328 n n C5D H51N NDP sing 329 n n C5D H52N NDP sing 330 n n C4D O4D NDP sing 331 n n C4D C3D NDP sing 332 n n C4D H4D NDP sing 333 n n O4D C1D NDP sing 334 n n C3D O3D NDP sing 335 n n C3D C2D NDP sing 336 n n C3D H3D NDP sing 337 n n O3D HO3N NDP sing 338 n n C2D O2D NDP sing 339 n n C2D C1D NDP sing 340 n n C2D H2D NDP sing 341 n n O2D HO2N NDP sing 342 n n C1D N1N NDP sing 343 n n C1D H1D NDP sing 344 n n N1N C2N NDP sing 345 n n N1N C6N NDP sing 346 n n C2N C3N NDP doub 347 n n C2N H2N NDP sing 348 n n C3N C7N NDP sing 349 n n C3N C4N NDP sing 350 n n C7N O7N NDP doub 351 n n C7N N7N NDP sing 352 n n N7N H71N NDP sing 353 n n N7N H72N NDP sing 354 n n C4N C5N NDP sing 355 n n C4N H41N NDP sing 356 n n C4N H42N NDP sing 357 n n C5N C6N NDP doub 358 n n C5N H5N NDP sing 359 n n C6N H6N NDP sing 360 n n P2B O1X NDP doub 361 n n P2B O2X NDP sing 362 n n P2B O3X NDP sing 363 n n O2X HOP2 NDP sing 364 n n O3X HOP3 NDP sing 365 n n # _atom_sites.entry_id 9CTO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 2301 2301 NDP NDP . D 3 6VG A 1 2302 2241 6VG 4HH . E 2 NDP B 1 2301 2301 NDP NDP . F 3 6VG B 1 2302 2241 6VG 4HH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 182.527 148.407 106.072 1 99.18 ? PA NDP 2301 B 1 HETATM 2 O O1A NDP . . . E 2 183.419 149.387 105.395 1 93.76 ? O1A NDP 2301 B 1 HETATM 3 O O2A NDP . . . E 2 181.839 148.742 107.362 1 105.99 ? O2A NDP 2301 B 1 HETATM 4 O O5B NDP . . . E 2 183.306 146.977 106.226 1 93.27 ? O5B NDP 2301 B 1 HETATM 5 C C5B NDP . . . E 2 183.661 146.633 104.929 1 87.21 ? C5B NDP 2301 B 1 HETATM 6 C C4B NDP . . . E 2 184.592 145.457 105.009 1 87.04 ? C4B NDP 2301 B 1 HETATM 7 O O4B NDP . . . E 2 184.99 145.067 103.725 1 85.74 ? O4B NDP 2301 B 1 HETATM 8 C C3B NDP . . . E 2 185.841 145.905 105.788 1 94.16 ? C3B NDP 2301 B 1 HETATM 9 O O3B NDP . . . E 2 185.823 145.363 107.066 1 90.15 ? O3B NDP 2301 B 1 HETATM 10 C C2B NDP . . . E 2 187.003 145.262 104.981 1 89.95 ? C2B NDP 2301 B 1 HETATM 11 O O2B NDP . . . E 2 187.783 144.475 105.708 1 94.27 ? O2B NDP 2301 B 1 HETATM 12 C C1B NDP . . . E 2 186.207 144.394 103.932 1 84.26 ? C1B NDP 2301 B 1 HETATM 13 N N9A NDP . . . E 2 186.909 144.303 102.649 1 81.73 ? N9A NDP 2301 B 1 HETATM 14 C C8A NDP . . . E 2 187.165 145.322 101.72 1 82.97 ? C8A NDP 2301 B 1 HETATM 15 N N7A NDP . . . E 2 187.842 144.898 100.636 1 77.18 ? N7A NDP 2301 B 1 HETATM 16 C C5A NDP . . . E 2 188.037 143.532 100.88 1 78.51 ? C5A NDP 2301 B 1 HETATM 17 C C6A NDP . . . E 2 188.672 142.527 100.135 1 87.06 ? C6A NDP 2301 B 1 HETATM 18 N N6A NDP . . . E 2 189.249 142.822 98.92 1 89.67 ? N6A NDP 2301 B 1 HETATM 19 N N1A NDP . . . E 2 188.741 141.239 100.583 1 90.59 ? N1A NDP 2301 B 1 HETATM 20 C C2A NDP . . . E 2 188.14 141.02 101.803 1 87.41 ? C2A NDP 2301 B 1 HETATM 21 N N3A NDP . . . E 2 187.499 141.863 102.628 1 79 ? N3A NDP 2301 B 1 HETATM 22 C C4A NDP . . . E 2 187.461 143.146 102.131 1 80.03 ? C4A NDP 2301 B 1 HETATM 23 O O3 NDP . . . E 2 181.337 148.243 104.961 1 92.04 ? O3 NDP 2301 B 1 HETATM 24 P PN NDP . . . E 2 180.019 147.842 105.735 1 91.91 ? PN NDP 2301 B 1 HETATM 25 O O1N NDP . . . E 2 180.221 146.506 106.328 1 96.75 ? O1N NDP 2301 B 1 HETATM 26 O O2N NDP . . . E 2 179.363 148.994 106.466 1 86.76 ? O2N NDP 2301 B 1 HETATM 27 O O5D NDP . . . E 2 178.787 147.492 104.538 1 87.07 ? O5D NDP 2301 B 1 HETATM 28 C C5D NDP . . . E 2 179.087 146.256 104.042 1 91.79 ? C5D NDP 2301 B 1 HETATM 29 C C4D NDP . . . E 2 178.34 146.083 102.743 1 84.79 ? C4D NDP 2301 B 1 HETATM 30 O O4D NDP . . . E 2 177.086 146.753 102.846 1 82.27 ? O4D NDP 2301 B 1 HETATM 31 C C3D NDP . . . E 2 179.156 146.8 101.64 1 86.59 ? C3D NDP 2301 B 1 HETATM 32 O O3D NDP . . . E 2 179.405 145.889 100.623 1 86.62 ? O3D NDP 2301 B 1 HETATM 33 C C2D NDP . . . E 2 178.232 147.922 101.16 1 85.35 ? C2D NDP 2301 B 1 HETATM 34 O O2D NDP . . . E 2 178.18 148.02 99.774 1 89.79 ? O2D NDP 2301 B 1 HETATM 35 C C1D NDP . . . E 2 176.848 147.45 101.653 1 79.64 ? C1D NDP 2301 B 1 HETATM 36 N N1N NDP . . . E 2 176.029 148.618 101.975 1 78.67 ? N1N NDP 2301 B 1 HETATM 37 C C2N NDP . . . E 2 176.224 149.257 103.169 1 85.27 ? C2N NDP 2301 B 1 HETATM 38 C C3N NDP . . . E 2 175.677 150.472 103.396 1 81.91 ? C3N NDP 2301 B 1 HETATM 39 C C7N NDP . . . E 2 175.951 151.055 104.695 1 86.96 ? C7N NDP 2301 B 1 HETATM 40 O O7N NDP . . . E 2 176.416 150.433 105.656 1 88.76 ? O7N NDP 2301 B 1 HETATM 41 N N7N NDP . . . E 2 175.674 152.397 104.849 1 92.81 ? N7N NDP 2301 B 1 HETATM 42 C C4N NDP . . . E 2 174.848 151.172 102.383 1 85.42 ? C4N NDP 2301 B 1 HETATM 43 C C5N NDP . . . E 2 174.481 150.279 101.259 1 82.59 ? C5N NDP 2301 B 1 HETATM 44 C C6N NDP . . . E 2 175.051 149.084 101.088 1 79.34 ? C6N NDP 2301 B 1 HETATM 45 P P2B NDP . . . E 2 189.374 145.279 106.072 1 101.45 ? P2B NDP 2301 B 1 HETATM 46 O O1X NDP . . . E 2 188.804 146.486 106.749 1 99.42 ? O1X NDP 2301 B 1 HETATM 47 O O2X NDP . . . E 2 190.006 145.473 104.691 1 85.47 ? O2X NDP 2301 B 1 HETATM 48 O O3X NDP . . . E 2 189.944 144.198 106.946 1 102.33 ? O3X NDP 2301 B 1 HETATM 49 H H51A NDP . . . E 2 184.05 147.373 104.44 1 89.94 ? H51A NDP 2301 B 1 HETATM 50 H H52A NDP . . . E 2 182.866 146.369 104.438 1 87.79 ? H52A NDP 2301 B 1 HETATM 51 H H4B NDP . . . E 2 184.144 144.705 105.427 1 86.61 ? H4B NDP 2301 B 1 HETATM 52 H H3B NDP . . . E 2 185.952 146.868 105.797 1 92.68 ? H3B NDP 2301 B 1 HETATM 53 H HO3A NDP . . . E 2 186.02 144.542 106.969 1 88.79 ? HO3A NDP 2301 B 1 HETATM 54 H H2B NDP . . . E 2 187.445 145.971 104.489 1 89.29 ? H2B NDP 2301 B 1 HETATM 55 H H1B NDP . . . E 2 186.057 143.492 104.25 1 85.42 ? H1B NDP 2301 B 1 HETATM 56 H H8A NDP . . . E 2 186.879 146.197 101.867 1 85.38 ? H8A NDP 2301 B 1 HETATM 57 H H61A NDP . . . E 2 189.678 142.209 98.495 1 91.76 ? H61A NDP 2301 B 1 HETATM 58 H H62A NDP . . . E 2 189.177 143.616 98.597 1 89.23 ? H62A NDP 2301 B 1 HETATM 59 H H2A NDP . . . E 2 188.195 140.135 102.093 1 85.54 ? H2A NDP 2301 B 1 HETATM 60 H H51N NDP . . . E 2 178.782 145.566 104.65 1 87.55 ? H51N NDP 2301 B 1 HETATM 61 H H52N NDP . . . E 2 180.041 146.102 103.947 1 89.74 ? H52N NDP 2301 B 1 HETATM 62 H H4D NDP . . . E 2 178.215 145.138 102.562 1 83.24 ? H4D NDP 2301 B 1 HETATM 63 H H3D NDP . . . E 2 179.966 147.17 102.015 1 86.82 ? H3D NDP 2301 B 1 HETATM 64 H HO3N NDP . . . E 2 179.192 146.287 99.904 1 85.46 ? HO3N NDP 2301 B 1 HETATM 65 H H2D NDP . . . E 2 178.474 148.769 101.564 1 85.75 ? H2D NDP 2301 B 1 HETATM 66 H HO2N NDP . . . E 2 177.559 148.575 99.609 1 84.2 ? HO2N NDP 2301 B 1 HETATM 67 H H1D NDP . . . E 2 176.38 146.884 101.021 1 80.74 ? H1D NDP 2301 B 1 HETATM 68 H H2N NDP . . . E 2 176.742 148.833 103.814 1 85.91 ? H2N NDP 2301 B 1 HETATM 69 H H71N NDP . . . E 2 175.353 152.845 104.191 1 88.7 ? H71N NDP 2301 B 1 HETATM 70 H H72N NDP . . . E 2 175.814 152.804 105.592 1 94.47 ? H72N NDP 2301 B 1 HETATM 71 H H41N NDP . . . E 2 175.317 151.945 102.033 1 84.87 ? H41N NDP 2301 B 1 HETATM 72 H H42N NDP . . . E 2 174.043 151.515 102.801 1 82.14 ? H42N NDP 2301 B 1 HETATM 73 H H5N NDP . . . E 2 173.831 150.566 100.655 1 78.92 ? H5N NDP 2301 B 1 HETATM 74 H H6N NDP . . . E 2 174.823 148.522 100.384 1 78.95 ? H6N NDP 2301 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 74 #