data_9CTU
#
_model_server_result.job_id            4265aMd7w-dhsZ-DVhmTRw 
_model_server_result.datetime_utc      '2025-08-31 21:29:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ctu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    9CTU 
#
_exptl.entry_id    9CTU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              617.881 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,3R,4E)-2-(hexadecanoylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CTU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CTU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 43 C CYS 23 1_555 A SG CYS 112 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 158 C CYS 138 1_555 A SG CYS 218 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 B SG CYS 41 D CYS 22 1_555 B SG CYS 115 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 159 D CYS 140 1_555 B SG CYS 214 D CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 C SG CYS 43 E CYS 23 1_555 C SG CYS 112 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 C SG CYS 158 E CYS 138 1_555 C SG CYS 218 E CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 D SG CYS 41 F CYS 22 1_555 D SG CYS 115 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 D SG CYS 159 F CYS 140 1_555 D SG CYS 214 F CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 E OG SER 99 A SER 99 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc2 E O SER 111 A SER 111 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? 
metalc ? metalc3 E O ASN 113 A ASN 113 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? 
metalc ? metalc4 E O THR 116 A THR 116 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc5 E OD1 ASN 117 A ASN 117 1_555 H K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc6 F OG SER 99 B SER 99 1_555 J K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc7 F O SER 111 B SER 111 1_555 J K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.88 ? 
metalc ? metalc8 F O ASN 113 B ASN 113 1_555 J K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc9 F O THR 116 B THR 116 1_555 J K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.822 ? 
metalc ? metalc10 F OD1 ASN 117 B ASN 117 1_555 J K K . B K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
#
_chem_comp.formula           'C34 H68 N O6 P' 
_chem_comp.formula_weight    617.881 
_chem_comp.id                1PX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,3R,4E)-2-(hexadecanoylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAY CBA 1PX sing 1 n n 
CAY CAV 1PX sing 2 n n 
CBA CAX 1PX sing 3 n n 
CAS CAV 1PX sing 4 n n 
CAS CAP 1PX sing 5 n n 
CAA CAJ 1PX sing 6 n n 
CAJ CAM 1PX sing 7 n n 
CAK CAB 1PX sing 8 n n 
CAK CAN 1PX sing 9 n n 
CAX CAU 1PX sing 10 n n 
CAM CAP 1PX sing 11 n n 
CAU CAR 1PX sing 12 n n 
CAQ CAN 1PX sing 13 n n 
CAQ CAT 1PX sing 14 n n 
OAC CBM 1PX doub 15 n n 
CAO CAR 1PX sing 16 n n 
CAO CAL 1PX sing 17 n n 
CAW CAT 1PX sing 18 n n 
CAW CAZ 1PX sing 19 n n 
CBD CBC 1PX sing 20 n n 
CBD CBE 1PX sing 21 n n 
CBF CBE 1PX sing 22 n n 
CBF CBG 1PX sing 23 n n 
CBM CBI 1PX sing 24 n n 
CBM NBK 1PX sing 25 n n 
CBC CBB 1PX sing 26 n n 
CBH CBI 1PX sing 27 n n 
CBH CBG 1PX sing 28 n n 
CAI CBN 1PX sing 29 n n 
CAI CAH 1PX doub 30 e n 
CAL CAH 1PX sing 31 n n 
CBB CAZ 1PX sing 32 n n 
CBO NBK 1PX sing 33 n n 
CBO CBN 1PX sing 34 n n 
CBO CBJ 1PX sing 35 n n 
OAE CBN 1PX sing 36 n n 
OBL CBJ 1PX sing 37 n n 
OBL PBP 1PX sing 38 n n 
OAD PBP 1PX doub 39 n n 
OAG PBP 1PX sing 40 n n 
PBP OAF 1PX sing 41 n n 
CAB H1 1PX sing 42 n n 
CAB H2 1PX sing 43 n n 
CAB H3 1PX sing 44 n n 
CAK H4 1PX sing 45 n n 
CAK H5 1PX sing 46 n n 
CAN H6 1PX sing 47 n n 
CAN H7 1PX sing 48 n n 
CAQ H8 1PX sing 49 n n 
CAQ H9 1PX sing 50 n n 
CAT H10 1PX sing 51 n n 
CAT H11 1PX sing 52 n n 
CAW H12 1PX sing 53 n n 
CAW H13 1PX sing 54 n n 
CAZ H14 1PX sing 55 n n 
CAZ H15 1PX sing 56 n n 
CBB H16 1PX sing 57 n n 
CBB H17 1PX sing 58 n n 
CBC H18 1PX sing 59 n n 
CBC H19 1PX sing 60 n n 
CBD H20 1PX sing 61 n n 
CBD H21 1PX sing 62 n n 
CBE H22 1PX sing 63 n n 
CBE H23 1PX sing 64 n n 
CBF H24 1PX sing 65 n n 
CBF H25 1PX sing 66 n n 
CBG H26 1PX sing 67 n n 
CBG H27 1PX sing 68 n n 
CBH H28 1PX sing 69 n n 
CBH H29 1PX sing 70 n n 
CBI H30 1PX sing 71 n n 
CBI H31 1PX sing 72 n n 
NBK H32 1PX sing 73 n n 
CBO H33 1PX sing 74 n n 
CBJ H34 1PX sing 75 n n 
CBJ H35 1PX sing 76 n n 
OAF H36 1PX sing 77 n n 
OAG H37 1PX sing 78 n n 
CBN H38 1PX sing 79 n n 
OAE H39 1PX sing 80 n n 
CAI H40 1PX sing 81 n n 
CAH H41 1PX sing 82 n n 
CAL H42 1PX sing 83 n n 
CAL H43 1PX sing 84 n n 
CAO H44 1PX sing 85 n n 
CAO H45 1PX sing 86 n n 
CAR H46 1PX sing 87 n n 
CAR H47 1PX sing 88 n n 
CAU H48 1PX sing 89 n n 
CAU H49 1PX sing 90 n n 
CAX H50 1PX sing 91 n n 
CAX H51 1PX sing 92 n n 
CBA H52 1PX sing 93 n n 
CBA H53 1PX sing 94 n n 
CAY H54 1PX sing 95 n n 
CAY H55 1PX sing 96 n n 
CAV H56 1PX sing 97 n n 
CAV H57 1PX sing 98 n n 
CAS H58 1PX sing 99 n n 
CAS H59 1PX sing 100 n n 
CAP H60 1PX sing 101 n n 
CAP H61 1PX sing 102 n n 
CAM H62 1PX sing 103 n n 
CAM H63 1PX sing 104 n n 
CAJ H64 1PX sing 105 n n 
CAJ H65 1PX sing 106 n n 
CAA H66 1PX sing 107 n n 
CAA H67 1PX sing 108 n n 
CAA H68 1PX sing 109 n n 
#
_atom_sites.entry_id                     9CTU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 1PX A 1 301 301 1PX 1PX . 
H 5 K A 1 302 2 K K . 
I 4 1PX B 1 301 301 1PX 1PX . 
J 5 K B 1 302 1 K K . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAN 1PX . . . G 4 137.418 119.3 111.918 1 49.68 ? CAN 1PX 301 A 1 
HETATM 2 C CAQ 1PX . . . G 4 137.771 120.636 112.493 1 54.7 ? CAQ 1PX 301 A 1 
HETATM 3 C CAT 1PX . . . G 4 138.037 120.37 113.958 1 58.99 ? CAT 1PX 301 A 1 
HETATM 4 C CAW 1PX . . . G 4 137.746 121.65 114.687 1 54.47 ? CAW 1PX 301 A 1 
HETATM 5 C CAZ 1PX . . . G 4 137.603 121.407 116.167 1 54.42 ? CAZ 1PX 301 A 1 
HETATM 6 C CBB 1PX . . . G 4 136.216 120.843 116.423 1 52.13 ? CBB 1PX 301 A 1 
HETATM 7 C CBC 1PX . . . G 4 135.95 120.688 117.906 1 54.83 ? CBC 1PX 301 A 1 
HETATM 8 C CBD 1PX . . . G 4 137.115 120.021 118.629 1 56.27 ? CBD 1PX 301 A 1 
HETATM 9 C CBE 1PX . . . G 4 136.714 119.616 120.038 1 55.13 ? CBE 1PX 301 A 1 
HETATM 10 C CBF 1PX . . . G 4 137.93 119.255 120.869 1 54.31 ? CBF 1PX 301 A 1 
HETATM 11 C CBG 1PX . . . G 4 138.773 118.169 120.214 1 59.74 ? CBG 1PX 301 A 1 
HETATM 12 C CBH 1PX . . . G 4 139.759 117.566 121.223 1 61.88 ? CBH 1PX 301 A 1 
HETATM 13 C CBI 1PX . . . G 4 139.282 117.587 122.659 1 60.02 ? CBI 1PX 301 A 1 
HETATM 14 C CBM 1PX . . . G 4 140.107 116.549 123.389 1 66.4 ? CBM 1PX 301 A 1 
HETATM 15 O OAC 1PX . . . G 4 141.33 116.416 123.321 1 67.4 ? OAC 1PX 301 A 1 
HETATM 16 N NBK 1PX . . . G 4 139.314 115.772 124.144 1 71.49 ? NBK 1PX 301 A 1 
HETATM 17 C CBO 1PX . . . G 4 139.723 114.673 124.978 1 76.64 ? CBO 1PX 301 A 1 
HETATM 18 C CBJ 1PX . . . G 4 139.11 115.243 126.272 1 77.92 ? CBJ 1PX 301 A 1 
HETATM 19 O OBL 1PX . . . G 4 140.241 115.481 126.966 1 81.04 ? OBL 1PX 301 A 1 
HETATM 20 P PBP 1PX . . . G 4 139.935 115.86 128.562 1 81.7 ? PBP 1PX 301 A 1 
HETATM 21 O OAF 1PX . . . G 4 138.501 116.454 128.465 1 69.65 ? OAF 1PX 301 A 1 
HETATM 22 O OAG 1PX . . . G 4 139.961 114.41 129.023 1 76.13 ? OAG 1PX 301 A 1 
HETATM 23 O OAD 1PX . . . G 4 141.11 116.76 128.517 1 76.54 ? OAD 1PX 301 A 1 
HETATM 24 C CBN 1PX . . . G 4 138.889 113.43 124.644 1 80.29 ? CBN 1PX 301 A 1 
HETATM 25 O OAE 1PX . . . G 4 139.015 112.457 125.616 1 84.44 ? OAE 1PX 301 A 1 
HETATM 26 C CAI 1PX . . . G 4 139.208 112.887 123.282 1 80.87 ? CAI 1PX 301 A 1 
HETATM 27 C CAH 1PX . . . G 4 138.292 112.684 122.333 1 80.71 ? CAH 1PX 301 A 1 
HETATM 28 C CAL 1PX . . . G 4 138.591 112.146 120.97 1 81.43 ? CAL 1PX 301 A 1 
HETATM 29 C CAO 1PX . . . G 4 139.977 112.592 120.564 1 79.08 ? CAO 1PX 301 A 1 
HETATM 30 C CAR 1PX . . . G 4 140.025 112.996 119.127 1 78.69 ? CAR 1PX 301 A 1 
HETATM 31 C CAU 1PX . . . G 4 139.351 114.348 119.049 1 73.84 ? CAU 1PX 301 A 1 
HETATM 32 C CAX 1PX . . . G 4 139.943 114.979 117.827 1 77.26 ? CAX 1PX 301 A 1 
HETATM 33 C CBA 1PX . . . G 4 138.896 115.823 117.162 1 77.15 ? CBA 1PX 301 A 1 
HETATM 34 C CAY 1PX . . . G 4 139.541 116.377 115.927 1 75.37 ? CAY 1PX 301 A 1 
HETATM 35 C CAV 1PX . . . G 4 139.122 115.607 114.701 1 71.1 ? CAV 1PX 301 A 1 
HETATM 36 C CAS 1PX . . . G 4 139.689 116.395 113.547 1 65.48 ? CAS 1PX 301 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           341 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           36 
#