data_9CV2 # _model_server_result.job_id SHPEtUGcqAhNGcCvg-JeGg _model_server_result.datetime_utc '2025-07-17 12:02:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 9CV2 # _exptl.entry_id 9CV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 217.285 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CV2 _cell.length_a 67.642 _cell.length_b 77.318 _cell.length_c 78.854 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 91 A HIS 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 A ND1 HIS 93 A HIS 116 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc3 A OD2 ASP 95 A ASP 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 A NE2 HIS 130 A HIS 153 1_555 D ZN ZN . A ZN 303 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc5 A NE2 HIS 156 A HIS 179 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc6 A SG CYS 175 A CYS 198 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc7 A NE2 HIS 217 A HIS 240 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc8 A ND1 HIS 228 A HIS 251 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 E S MCO . A MCO 304 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.293 ? metalc ? metalc10 B ZN ZN . A ZN 301 1_555 E S MCO . A MCO 304 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.303 ? metalc ? metalc11 C ZN ZN . A ZN 302 1_555 E S MCO . A MCO 304 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.276 ? metalc ? metalc12 C ZN ZN . A ZN 302 1_555 E S MCO . A MCO 304 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.258 ? metalc ? metalc13 D ZN ZN . A ZN 303 1_555 F O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc14 D ZN ZN . A ZN 303 1_555 F O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? # _chem_comp.formula 'C9 H15 N O3 S' _chem_comp.formula_weight 217.285 _chem_comp.id MCO _chem_comp.mon_nstd_flag . _chem_comp.name '1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C9 MCO doub 218 n n C9 O3 MCO sing 219 n n C9 C8 MCO sing 220 n n O3 HO31 MCO sing 221 n n C8 C7 MCO sing 222 n n C8 N MCO sing 223 n n C8 HC81 MCO sing 224 n n C7 C6 MCO sing 225 n n C7 HC71 MCO sing 226 n n C7 HC72 MCO sing 227 n n C6 C5 MCO sing 228 n n C6 HC61 MCO sing 229 n n C6 HC62 MCO sing 230 n n C5 N MCO sing 231 n n C5 HC51 MCO sing 232 n n C5 HC52 MCO sing 233 n n N C4 MCO sing 234 n n C4 O1 MCO doub 235 n n C4 C2 MCO sing 236 n n C2 C3 MCO sing 237 n n C2 C1 MCO sing 238 n n C2 HC21 MCO sing 239 n n C3 HC31 MCO sing 240 n n C3 HC32 MCO sing 241 n n C3 HC33 MCO sing 242 n n C1 S MCO sing 243 n n C1 HC11 MCO sing 244 n n C1 HC12 MCO sing 245 n n S HS1 MCO sing 246 n n # _atom_sites.entry_id 9CV2 _atom_sites.fract_transf_matrix[1][1] 0.014784 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 2 ZN A 1 303 303 ZN ZN . E 3 MCO A 1 304 304 MCO MCO . F 4 HOH A 1 401 124 HOH HOH . F 4 HOH A 2 402 199 HOH HOH . F 4 HOH A 3 403 79 HOH HOH . F 4 HOH A 4 404 20 HOH HOH . F 4 HOH A 5 405 80 HOH HOH . F 4 HOH A 6 406 198 HOH HOH . F 4 HOH A 7 407 29 HOH HOH . F 4 HOH A 8 408 102 HOH HOH . F 4 HOH A 9 409 166 HOH HOH . F 4 HOH A 10 410 88 HOH HOH . F 4 HOH A 11 411 113 HOH HOH . F 4 HOH A 12 412 139 HOH HOH . F 4 HOH A 13 413 42 HOH HOH . F 4 HOH A 14 414 41 HOH HOH . F 4 HOH A 15 415 129 HOH HOH . F 4 HOH A 16 416 89 HOH HOH . F 4 HOH A 17 417 185 HOH HOH . F 4 HOH A 18 418 82 HOH HOH . F 4 HOH A 19 419 197 HOH HOH . F 4 HOH A 20 420 68 HOH HOH . F 4 HOH A 21 421 27 HOH HOH . F 4 HOH A 22 422 48 HOH HOH . F 4 HOH A 23 423 123 HOH HOH . F 4 HOH A 24 424 24 HOH HOH . F 4 HOH A 25 425 38 HOH HOH . F 4 HOH A 26 426 37 HOH HOH . F 4 HOH A 27 427 90 HOH HOH . F 4 HOH A 28 428 147 HOH HOH . F 4 HOH A 29 429 39 HOH HOH . F 4 HOH A 30 430 75 HOH HOH . F 4 HOH A 31 431 1 HOH HOH . F 4 HOH A 32 432 93 HOH HOH . F 4 HOH A 33 433 32 HOH HOH . F 4 HOH A 34 434 52 HOH HOH . F 4 HOH A 35 435 64 HOH HOH . F 4 HOH A 36 436 14 HOH HOH . F 4 HOH A 37 437 5 HOH HOH . F 4 HOH A 38 438 61 HOH HOH . F 4 HOH A 39 439 51 HOH HOH . F 4 HOH A 40 440 116 HOH HOH . F 4 HOH A 41 441 56 HOH HOH . F 4 HOH A 42 442 34 HOH HOH . F 4 HOH A 43 443 45 HOH HOH . F 4 HOH A 44 444 18 HOH HOH . F 4 HOH A 45 445 16 HOH HOH . F 4 HOH A 46 446 13 HOH HOH . F 4 HOH A 47 447 187 HOH HOH . F 4 HOH A 48 448 47 HOH HOH . F 4 HOH A 49 449 114 HOH HOH . F 4 HOH A 50 450 60 HOH HOH . F 4 HOH A 51 451 157 HOH HOH . F 4 HOH A 52 452 165 HOH HOH . F 4 HOH A 53 453 73 HOH HOH . F 4 HOH A 54 454 91 HOH HOH . F 4 HOH A 55 455 151 HOH HOH . F 4 HOH A 56 456 118 HOH HOH . F 4 HOH A 57 457 30 HOH HOH . F 4 HOH A 58 458 122 HOH HOH . F 4 HOH A 59 459 15 HOH HOH . F 4 HOH A 60 460 192 HOH HOH . F 4 HOH A 61 461 84 HOH HOH . F 4 HOH A 62 462 109 HOH HOH . F 4 HOH A 63 463 106 HOH HOH . F 4 HOH A 64 464 31 HOH HOH . F 4 HOH A 65 465 53 HOH HOH . F 4 HOH A 66 466 164 HOH HOH . F 4 HOH A 67 467 174 HOH HOH . F 4 HOH A 68 468 141 HOH HOH . F 4 HOH A 69 469 35 HOH HOH . F 4 HOH A 70 470 25 HOH HOH . F 4 HOH A 71 471 193 HOH HOH . F 4 HOH A 72 472 71 HOH HOH . F 4 HOH A 73 473 7 HOH HOH . F 4 HOH A 74 474 97 HOH HOH . F 4 HOH A 75 475 40 HOH HOH . F 4 HOH A 76 476 44 HOH HOH . F 4 HOH A 77 477 28 HOH HOH . F 4 HOH A 78 478 6 HOH HOH . F 4 HOH A 79 479 57 HOH HOH . F 4 HOH A 80 480 17 HOH HOH . F 4 HOH A 81 481 33 HOH HOH . F 4 HOH A 82 482 121 HOH HOH . F 4 HOH A 83 483 170 HOH HOH . F 4 HOH A 84 484 130 HOH HOH . F 4 HOH A 85 485 50 HOH HOH . F 4 HOH A 86 486 96 HOH HOH . F 4 HOH A 87 487 85 HOH HOH . F 4 HOH A 88 488 92 HOH HOH . F 4 HOH A 89 489 125 HOH HOH . F 4 HOH A 90 490 188 HOH HOH . F 4 HOH A 91 491 78 HOH HOH . F 4 HOH A 92 492 162 HOH HOH . F 4 HOH A 93 493 190 HOH HOH . F 4 HOH A 94 494 10 HOH HOH . F 4 HOH A 95 495 19 HOH HOH . F 4 HOH A 96 496 168 HOH HOH . F 4 HOH A 97 497 54 HOH HOH . F 4 HOH A 98 498 94 HOH HOH . F 4 HOH A 99 499 46 HOH HOH . F 4 HOH A 100 500 8 HOH HOH . F 4 HOH A 101 501 108 HOH HOH . F 4 HOH A 102 502 98 HOH HOH . F 4 HOH A 103 503 160 HOH HOH . F 4 HOH A 104 504 180 HOH HOH . F 4 HOH A 105 505 167 HOH HOH . F 4 HOH A 106 506 115 HOH HOH . F 4 HOH A 107 507 4 HOH HOH . F 4 HOH A 108 508 131 HOH HOH . F 4 HOH A 109 509 76 HOH HOH . F 4 HOH A 110 510 186 HOH HOH . F 4 HOH A 111 511 137 HOH HOH . F 4 HOH A 112 512 23 HOH HOH . F 4 HOH A 113 513 99 HOH HOH . F 4 HOH A 114 514 59 HOH HOH . F 4 HOH A 115 515 120 HOH HOH . F 4 HOH A 116 516 178 HOH HOH . F 4 HOH A 117 517 119 HOH HOH . F 4 HOH A 118 518 74 HOH HOH . F 4 HOH A 119 519 172 HOH HOH . F 4 HOH A 120 520 81 HOH HOH . F 4 HOH A 121 521 12 HOH HOH . F 4 HOH A 122 522 104 HOH HOH . F 4 HOH A 123 523 161 HOH HOH . F 4 HOH A 124 524 49 HOH HOH . F 4 HOH A 125 525 111 HOH HOH . F 4 HOH A 126 526 66 HOH HOH . F 4 HOH A 127 527 134 HOH HOH . F 4 HOH A 128 528 154 HOH HOH . F 4 HOH A 129 529 155 HOH HOH . F 4 HOH A 130 530 150 HOH HOH . F 4 HOH A 131 531 26 HOH HOH . F 4 HOH A 132 532 173 HOH HOH . F 4 HOH A 133 533 140 HOH HOH . F 4 HOH A 134 534 179 HOH HOH . F 4 HOH A 135 535 117 HOH HOH . F 4 HOH A 136 536 62 HOH HOH . F 4 HOH A 137 537 112 HOH HOH . F 4 HOH A 138 538 70 HOH HOH . F 4 HOH A 139 539 101 HOH HOH . F 4 HOH A 140 540 103 HOH HOH . F 4 HOH A 141 541 158 HOH HOH . F 4 HOH A 142 542 95 HOH HOH . F 4 HOH A 143 543 159 HOH HOH . F 4 HOH A 144 544 67 HOH HOH . F 4 HOH A 145 545 72 HOH HOH . F 4 HOH A 146 546 105 HOH HOH . F 4 HOH A 147 547 58 HOH HOH . F 4 HOH A 148 548 107 HOH HOH . F 4 HOH A 149 549 143 HOH HOH . F 4 HOH A 150 550 142 HOH HOH . F 4 HOH A 151 551 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 MCO . A . E 3 -29.14 -21.542 -3.62 0.49 33.06 ? O2 MCO 304 A 1 HETATM 2 O O2 MCO . B . E 3 -32.554 -22.338 -8.093 0.51 34.92 ? O2 MCO 304 A 1 HETATM 3 C C9 MCO . A . E 3 -28.981 -22.186 -4.669 0.49 30.51 ? C9 MCO 304 A 1 HETATM 4 C C9 MCO . B . E 3 -31.974 -22.27 -7.028 0.51 34.18 ? C9 MCO 304 A 1 HETATM 5 O O3 MCO . A . E 3 -28.003 -22.906 -4.963 0.49 29.68 ? O3 MCO 304 A 1 HETATM 6 O O3 MCO . B . E 3 -32.062 -23.074 -6.121 0.51 37.86 ? O3 MCO 304 A 1 HETATM 7 C C8 MCO . A . E 3 -30.072 -22.078 -5.755 0.49 30.63 ? C8 MCO 304 A 1 HETATM 8 C C8 MCO . B . E 3 -31.047 -21.072 -6.817 0.51 33.95 ? C8 MCO 304 A 1 HETATM 9 C C7 MCO . A . E 3 -31.177 -21.106 -5.325 0.49 33.65 ? C7 MCO 304 A 1 HETATM 10 C C7 MCO . B . E 3 -31.043 -20.671 -5.335 0.51 33.63 ? C7 MCO 304 A 1 HETATM 11 C C6 MCO . A . E 3 -30.855 -19.778 -6.015 0.49 31.72 ? C6 MCO 304 A 1 HETATM 12 C C6 MCO . B . E 3 -29.671 -21.059 -4.812 0.51 30.44 ? C6 MCO 304 A 1 HETATM 13 C C5 MCO . A . E 3 -29.446 -19.962 -6.576 0.49 28.92 ? C5 MCO 304 A 1 HETATM 14 C C5 MCO . B . E 3 -28.761 -20.941 -6.005 0.51 28.18 ? C5 MCO 304 A 1 HETATM 15 N N MCO . A . E 3 -29.518 -21.376 -6.887 0.49 30.5 ? N MCO 304 A 1 HETATM 16 N N MCO . B . E 3 -29.641 -21.405 -7.084 0.51 30.48 ? N MCO 304 A 1 HETATM 17 C C4 MCO . A . E 3 -29.156 -22.014 -7.997 0.49 29.06 ? C4 MCO 304 A 1 HETATM 18 C C4 MCO . B . E 3 -29.26 -22.069 -8.181 0.51 29.23 ? C4 MCO 304 A 1 HETATM 19 O O1 MCO . A . E 3 -29.288 -23.225 -8.121 0.49 28.74 ? O1 MCO 304 A 1 HETATM 20 O O1 MCO . B . E 3 -29.491 -23.264 -8.3 0.51 28.69 ? O1 MCO 304 A 1 HETATM 21 C C2 MCO . A . E 3 -28.553 -21.187 -9.119 0.49 24.77 ? C2 MCO 304 A 1 HETATM 22 C C2 MCO . B . E 3 -28.512 -21.292 -9.241 0.51 24.75 ? C2 MCO 304 A 1 HETATM 23 C C3 MCO . A . E 3 -29.661 -20.758 -10.088 0.49 25.13 ? C3 MCO 304 A 1 HETATM 24 C C3 MCO . B . E 3 -29.503 -20.834 -10.306 0.51 25.03 ? C3 MCO 304 A 1 HETATM 25 C C1 MCO . A . E 3 -27.475 -22.02 -9.811 0.49 22.4 ? C1 MCO 304 A 1 HETATM 26 C C1 MCO . B . E 3 -27.468 -22.202 -9.869 0.51 22.58 ? C1 MCO 304 A 1 HETATM 27 S S MCO . A . E 3 -26.076 -22.498 -8.725 0.49 19.3 ? S MCO 304 A 1 HETATM 28 S S MCO . B . E 3 -26.08 -22.472 -8.737 0.51 19.23 ? S MCO 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 218 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #