data_9CV4
#
_model_server_result.job_id            4ioagfTtYNI_2bjvpaYX7g 
_model_server_result.datetime_utc      '2025-07-10 18:03:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cv4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    9CV4 
#
_exptl.entry_id    9CV4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              217.285 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CV4 
_cell.length_a            67.58 
_cell.length_b            77.14 
_cell.length_c            79.01 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CV4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 91 A HIS 114 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc2 A ND1 HIS 93 A HIS 116 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc3 A OD2 ASP 95 A ASP 118 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc4 A NE2 HIS 130 A HIS 153 1_555 D ZN ZN . A ZN 303 6_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc5 A NE2 HIS 156 A HIS 179 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc6 A SG CYS 175 A CYS 198 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc7 A NE2 HIS 217 A HIS 240 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc8 A ND1 HIS 228 A HIS 251 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc9 B ZN ZN . A ZN 301 1_555 E S MCO . A MCO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc10 C ZN ZN . A ZN 302 1_555 E S MCO . A MCO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc11 D ZN ZN . A ZN 303 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc12 D ZN ZN . A ZN 303 1_555 F O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
#
_chem_comp.formula           'C9 H15 N O3 S' 
_chem_comp.formula_weight    217.285 
_chem_comp.id                MCO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C9 MCO doub 218 n n 
C9 O3 MCO sing 219 n n 
C9 C8 MCO sing 220 n n 
O3 HO31 MCO sing 221 n n 
C8 C7 MCO sing 222 n n 
C8 N MCO sing 223 n n 
C8 HC81 MCO sing 224 n n 
C7 C6 MCO sing 225 n n 
C7 HC71 MCO sing 226 n n 
C7 HC72 MCO sing 227 n n 
C6 C5 MCO sing 228 n n 
C6 HC61 MCO sing 229 n n 
C6 HC62 MCO sing 230 n n 
C5 N MCO sing 231 n n 
C5 HC51 MCO sing 232 n n 
C5 HC52 MCO sing 233 n n 
N C4 MCO sing 234 n n 
C4 O1 MCO doub 235 n n 
C4 C2 MCO sing 236 n n 
C2 C3 MCO sing 237 n n 
C2 C1 MCO sing 238 n n 
C2 HC21 MCO sing 239 n n 
C3 HC31 MCO sing 240 n n 
C3 HC32 MCO sing 241 n n 
C3 HC33 MCO sing 242 n n 
C1 S MCO sing 243 n n 
C1 HC11 MCO sing 244 n n 
C1 HC12 MCO sing 245 n n 
S HS1 MCO sing 246 n n 
#
_atom_sites.entry_id                     9CV4 
_atom_sites.fract_transf_matrix[1][1]    0.014797 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012963 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 301 301 ZN ZN . 
C 2 ZN A 1 302 302 ZN ZN . 
D 2 ZN A 1 303 303 ZN ZN . 
E 3 MCO A 1 304 304 MCO MCO . 
F 4 HOH A 1 401 159 HOH HOH . 
F 4 HOH A 2 402 66 HOH HOH . 
F 4 HOH A 3 403 160 HOH HOH . 
F 4 HOH A 4 404 154 HOH HOH . 
F 4 HOH A 5 405 5 HOH HOH . 
F 4 HOH A 6 406 166 HOH HOH . 
F 4 HOH A 7 407 165 HOH HOH . 
F 4 HOH A 8 408 43 HOH HOH . 
F 4 HOH A 9 409 89 HOH HOH . 
F 4 HOH A 10 410 156 HOH HOH . 
F 4 HOH A 11 411 53 HOH HOH . 
F 4 HOH A 12 412 28 HOH HOH . 
F 4 HOH A 13 413 68 HOH HOH . 
F 4 HOH A 14 414 110 HOH HOH . 
F 4 HOH A 15 415 144 HOH HOH . 
F 4 HOH A 16 416 24 HOH HOH . 
F 4 HOH A 17 417 45 HOH HOH . 
F 4 HOH A 18 418 164 HOH HOH . 
F 4 HOH A 19 419 116 HOH HOH . 
F 4 HOH A 20 420 17 HOH HOH . 
F 4 HOH A 21 421 113 HOH HOH . 
F 4 HOH A 22 422 83 HOH HOH . 
F 4 HOH A 23 423 49 HOH HOH . 
F 4 HOH A 24 424 4 HOH HOH . 
F 4 HOH A 25 425 61 HOH HOH . 
F 4 HOH A 26 426 41 HOH HOH . 
F 4 HOH A 27 427 50 HOH HOH . 
F 4 HOH A 28 428 95 HOH HOH . 
F 4 HOH A 29 429 9 HOH HOH . 
F 4 HOH A 30 430 108 HOH HOH . 
F 4 HOH A 31 431 11 HOH HOH . 
F 4 HOH A 32 432 70 HOH HOH . 
F 4 HOH A 33 433 147 HOH HOH . 
F 4 HOH A 34 434 26 HOH HOH . 
F 4 HOH A 35 435 16 HOH HOH . 
F 4 HOH A 36 436 37 HOH HOH . 
F 4 HOH A 37 437 13 HOH HOH . 
F 4 HOH A 38 438 34 HOH HOH . 
F 4 HOH A 39 439 114 HOH HOH . 
F 4 HOH A 40 440 123 HOH HOH . 
F 4 HOH A 41 441 8 HOH HOH . 
F 4 HOH A 42 442 6 HOH HOH . 
F 4 HOH A 43 443 22 HOH HOH . 
F 4 HOH A 44 444 85 HOH HOH . 
F 4 HOH A 45 445 127 HOH HOH . 
F 4 HOH A 46 446 48 HOH HOH . 
F 4 HOH A 47 447 38 HOH HOH . 
F 4 HOH A 48 448 35 HOH HOH . 
F 4 HOH A 49 449 62 HOH HOH . 
F 4 HOH A 50 450 96 HOH HOH . 
F 4 HOH A 51 451 14 HOH HOH . 
F 4 HOH A 52 452 39 HOH HOH . 
F 4 HOH A 53 453 55 HOH HOH . 
F 4 HOH A 54 454 2 HOH HOH . 
F 4 HOH A 55 455 31 HOH HOH . 
F 4 HOH A 56 456 172 HOH HOH . 
F 4 HOH A 57 457 152 HOH HOH . 
F 4 HOH A 58 458 87 HOH HOH . 
F 4 HOH A 59 459 47 HOH HOH . 
F 4 HOH A 60 460 130 HOH HOH . 
F 4 HOH A 61 461 161 HOH HOH . 
F 4 HOH A 62 462 67 HOH HOH . 
F 4 HOH A 63 463 1 HOH HOH . 
F 4 HOH A 64 464 109 HOH HOH . 
F 4 HOH A 65 465 52 HOH HOH . 
F 4 HOH A 66 466 146 HOH HOH . 
F 4 HOH A 67 467 107 HOH HOH . 
F 4 HOH A 68 468 101 HOH HOH . 
F 4 HOH A 69 469 3 HOH HOH . 
F 4 HOH A 70 470 20 HOH HOH . 
F 4 HOH A 71 471 10 HOH HOH . 
F 4 HOH A 72 472 51 HOH HOH . 
F 4 HOH A 73 473 74 HOH HOH . 
F 4 HOH A 74 474 128 HOH HOH . 
F 4 HOH A 75 475 82 HOH HOH . 
F 4 HOH A 76 476 103 HOH HOH . 
F 4 HOH A 77 477 58 HOH HOH . 
F 4 HOH A 78 478 153 HOH HOH . 
F 4 HOH A 79 479 42 HOH HOH . 
F 4 HOH A 80 480 141 HOH HOH . 
F 4 HOH A 81 481 57 HOH HOH . 
F 4 HOH A 82 482 69 HOH HOH . 
F 4 HOH A 83 483 77 HOH HOH . 
F 4 HOH A 84 484 27 HOH HOH . 
F 4 HOH A 85 485 151 HOH HOH . 
F 4 HOH A 86 486 135 HOH HOH . 
F 4 HOH A 87 487 29 HOH HOH . 
F 4 HOH A 88 488 18 HOH HOH . 
F 4 HOH A 89 489 30 HOH HOH . 
F 4 HOH A 90 490 19 HOH HOH . 
F 4 HOH A 91 491 59 HOH HOH . 
F 4 HOH A 92 492 21 HOH HOH . 
F 4 HOH A 93 493 143 HOH HOH . 
F 4 HOH A 94 494 129 HOH HOH . 
F 4 HOH A 95 495 63 HOH HOH . 
F 4 HOH A 96 496 84 HOH HOH . 
F 4 HOH A 97 497 148 HOH HOH . 
F 4 HOH A 98 498 171 HOH HOH . 
F 4 HOH A 99 499 80 HOH HOH . 
F 4 HOH A 100 500 105 HOH HOH . 
F 4 HOH A 101 501 119 HOH HOH . 
F 4 HOH A 102 502 149 HOH HOH . 
F 4 HOH A 103 503 124 HOH HOH . 
F 4 HOH A 104 504 23 HOH HOH . 
F 4 HOH A 105 505 56 HOH HOH . 
F 4 HOH A 106 506 118 HOH HOH . 
F 4 HOH A 107 507 94 HOH HOH . 
F 4 HOH A 108 508 142 HOH HOH . 
F 4 HOH A 109 509 72 HOH HOH . 
F 4 HOH A 110 510 170 HOH HOH . 
F 4 HOH A 111 511 163 HOH HOH . 
F 4 HOH A 112 512 106 HOH HOH . 
F 4 HOH A 113 513 98 HOH HOH . 
F 4 HOH A 114 514 99 HOH HOH . 
F 4 HOH A 115 515 7 HOH HOH . 
F 4 HOH A 116 516 76 HOH HOH . 
F 4 HOH A 117 517 12 HOH HOH . 
F 4 HOH A 118 518 133 HOH HOH . 
F 4 HOH A 119 519 121 HOH HOH . 
F 4 HOH A 120 520 36 HOH HOH . 
F 4 HOH A 121 521 120 HOH HOH . 
F 4 HOH A 122 522 167 HOH HOH . 
F 4 HOH A 123 523 137 HOH HOH . 
F 4 HOH A 124 524 150 HOH HOH . 
F 4 HOH A 125 525 174 HOH HOH . 
F 4 HOH A 126 526 126 HOH HOH . 
F 4 HOH A 127 527 75 HOH HOH . 
F 4 HOH A 128 528 71 HOH HOH . 
F 4 HOH A 129 529 73 HOH HOH . 
F 4 HOH A 130 530 115 HOH HOH . 
F 4 HOH A 131 531 15 HOH HOH . 
F 4 HOH A 132 532 104 HOH HOH . 
F 4 HOH A 133 533 168 HOH HOH . 
F 4 HOH A 134 534 162 HOH HOH . 
F 4 HOH A 135 535 131 HOH HOH . 
F 4 HOH A 136 536 97 HOH HOH . 
F 4 HOH A 137 537 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 MCO . . . E 3 -31.895 -20.188 -7.659 0.79 34.36 ? O2 MCO 304 A 1 
HETATM 2 C C9 MCO . . . E 3 -31.147 -19.87 -6.714 0.79 29.96 ? C9 MCO 304 A 1 
HETATM 3 O O3 MCO . . . E 3 -31.491 -19.364 -5.639 0.79 35.38 ? O3 MCO 304 A 1 
HETATM 4 C C8 MCO . . . E 3 -29.646 -20.175 -6.84 0.79 26.14 ? C8 MCO 304 A 1 
HETATM 5 C C7 MCO . . . E 3 -29.029 -20.225 -5.441 0.79 29.5 ? C7 MCO 304 A 1 
HETATM 6 C C6 MCO . . . E 3 -29.356 -21.639 -4.93 0.79 31.33 ? C6 MCO 304 A 1 
HETATM 7 C C5 MCO . . . E 3 -30.246 -22.262 -6.01 0.79 28.76 ? C5 MCO 304 A 1 
HETATM 8 N N MCO . . . E 3 -29.651 -21.569 -7.139 0.79 23.87 ? N MCO 304 A 1 
HETATM 9 C C4 MCO . . . E 3 -29.207 -22.092 -8.273 0.79 23.45 ? C4 MCO 304 A 1 
HETATM 10 O O1 MCO . . . E 3 -29.278 -23.295 -8.452 0.79 23.56 ? O1 MCO 304 A 1 
HETATM 11 C C2 MCO . . . E 3 -28.58 -21.21 -9.334 0.79 21.05 ? C2 MCO 304 A 1 
HETATM 12 C C3 MCO . . . E 3 -29.608 -20.778 -10.378 0.79 20.2 ? C3 MCO 304 A 1 
HETATM 13 C C1 MCO . . . E 3 -27.504 -22.059 -9.992 0.79 14.79 ? C1 MCO 304 A 1 
HETATM 14 S S MCO . . . E 3 -26.123 -22.538 -8.887 0.79 13.36 ? S MCO 304 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           1091 
_model_server_stats.encode_time_ms          34 
_model_server_stats.element_count           14 
#