data_9CVL # _model_server_result.job_id Pk_9zcHbNlu-NMOgPsX9OQ _model_server_result.datetime_utc '2025-08-05 14:51:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":805}' # _entry.id 9CVL # _exptl.entry_id 9CVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.777 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6P)-6-{3-chloro-5-[(dimethylamino)methyl]phenyl}-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CVL _cell.length_a 48.787 _cell.length_b 114.049 _cell.length_c 164.444 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 E ZN ZN . A ZN 804 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? # _chem_comp.formula 'C15 H18 Cl N3' _chem_comp.formula_weight 275.777 _chem_comp.id A1A0N _chem_comp.mon_nstd_flag . _chem_comp.name (6P)-6-{3-chloro-5-[(dimethylamino)methyl]phenyl}-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C04 A1A0N sing 1 n n C04 C03 A1A0N doub 2 n y C04 C05 A1A0N sing 3 n y C03 C02 A1A0N sing 4 n y C05 C06 A1A0N doub 5 n y C02 N02 A1A0N sing 6 n n C02 N01 A1A0N doub 7 n y C06 N01 A1A0N sing 8 n y C06 C11 A1A0N sing 9 n n C11 C12 A1A0N doub 10 n y C11 C16 A1A0N sing 11 n y C12 C13 A1A0N sing 12 n y C16 C15 A1A0N doub 13 n y C13 CL13 A1A0N sing 14 n n C13 C14 A1A0N doub 15 n y C15 C14 A1A0N sing 16 n y C15 C17 A1A0N sing 17 n n C17 N18 A1A0N sing 18 n n C19 N18 A1A0N sing 19 n n N18 C20 A1A0N sing 20 n n C12 H1 A1A0N sing 21 n n C03 H2 A1A0N sing 22 n n C05 H3 A1A0N sing 23 n n C07 H4 A1A0N sing 24 n n C07 H5 A1A0N sing 25 n n C07 H6 A1A0N sing 26 n n C14 H7 A1A0N sing 27 n n C16 H8 A1A0N sing 28 n n C17 H9 A1A0N sing 29 n n C17 H10 A1A0N sing 30 n n C19 H11 A1A0N sing 31 n n C19 H12 A1A0N sing 32 n n C19 H13 A1A0N sing 33 n n C20 H14 A1A0N sing 34 n n C20 H15 A1A0N sing 35 n n C20 H16 A1A0N sing 36 n n N02 H17 A1A0N sing 37 n n N02 H18 A1A0N sing 38 n n # _atom_sites.entry_id 9CVL _atom_sites.fract_transf_matrix[1][1] 0.020497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006081 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 ACT A 1 803 860 ACT ACT . E 5 ZN A 1 804 900 ZN ZN . F 6 A1A0N A 1 805 800 A1A0N 3V7 . G 7 HOH A 1 901 21 HOH HOH . G 7 HOH A 2 902 17 HOH HOH . G 7 HOH A 3 903 41 HOH HOH . G 7 HOH A 4 904 35 HOH HOH . G 7 HOH A 5 905 7 HOH HOH . G 7 HOH A 6 906 38 HOH HOH . G 7 HOH A 7 907 9 HOH HOH . G 7 HOH A 8 908 24 HOH HOH . G 7 HOH A 9 909 28 HOH HOH . G 7 HOH A 10 910 30 HOH HOH . G 7 HOH A 11 911 40 HOH HOH . G 7 HOH A 12 912 14 HOH HOH . G 7 HOH A 13 913 39 HOH HOH . G 7 HOH A 14 914 32 HOH HOH . G 7 HOH A 15 915 8 HOH HOH . G 7 HOH A 16 916 15 HOH HOH . G 7 HOH A 17 917 25 HOH HOH . G 7 HOH A 18 918 20 HOH HOH . G 7 HOH A 19 919 27 HOH HOH . G 7 HOH A 20 920 10 HOH HOH . G 7 HOH A 21 921 23 HOH HOH . G 7 HOH A 22 922 2 HOH HOH . G 7 HOH A 23 923 6 HOH HOH . G 7 HOH A 24 924 3 HOH HOH . G 7 HOH A 25 925 29 HOH HOH . G 7 HOH A 26 926 1 HOH HOH . G 7 HOH A 27 927 19 HOH HOH . G 7 HOH A 28 928 16 HOH HOH . G 7 HOH A 29 929 11 HOH HOH . G 7 HOH A 30 930 31 HOH HOH . G 7 HOH A 31 931 33 HOH HOH . G 7 HOH A 32 932 18 HOH HOH . G 7 HOH A 33 933 4 HOH HOH . G 7 HOH A 34 934 26 HOH HOH . G 7 HOH A 35 935 34 HOH HOH . G 7 HOH A 36 936 22 HOH HOH . G 7 HOH A 37 937 5 HOH HOH . G 7 HOH A 38 938 36 HOH HOH . G 7 HOH A 39 939 12 HOH HOH . G 7 HOH A 40 940 37 HOH HOH . G 7 HOH A 41 941 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1A0N . . . F 6 -22.795 -1.724 24.025 1 68.2 ? C11 A1A0N 805 A 1 HETATM 2 C C12 A1A0N . . . F 6 -22.461 -3.052 24.196 1 69.61 ? C12 A1A0N 805 A 1 HETATM 3 C C02 A1A0N . . . F 6 -25.848 0.222 23.291 1 63.06 ? C02 A1A0N 805 A 1 HETATM 4 C C03 A1A0N . . . F 6 -26.351 -0.432 22.166 1 63.5 ? C03 A1A0N 805 A 1 HETATM 5 C C04 A1A0N . . . F 6 -25.677 -1.53 21.646 1 64.03 ? C04 A1A0N 805 A 1 HETATM 6 C C05 A1A0N . . . F 6 -24.514 -1.966 22.27 1 63.98 ? C05 A1A0N 805 A 1 HETATM 7 C C06 A1A0N . . . F 6 -24.061 -1.293 23.4 1 66.11 ? C06 A1A0N 805 A 1 HETATM 8 C C07 A1A0N . . . F 6 -26.195 -2.257 20.434 1 58.54 ? C07 A1A0N 805 A 1 HETATM 9 C C13 A1A0N . . . F 6 -21.235 -3.38 24.769 1 71.42 ? C13 A1A0N 805 A 1 HETATM 10 C C14 A1A0N . . . F 6 -20.336 -2.37 25.16 1 71.86 ? C14 A1A0N 805 A 1 HETATM 11 C C15 A1A0N . . . F 6 -20.686 -1.022 24.952 1 73.57 ? C15 A1A0N 805 A 1 HETATM 12 C C16 A1A0N . . . F 6 -21.91 -0.733 24.375 1 71.02 ? C16 A1A0N 805 A 1 HETATM 13 C C17 A1A0N . . . F 6 -19.849 0.201 25.314 1 75.92 ? C17 A1A0N 805 A 1 HETATM 14 C C19 A1A0N . . . F 6 -17.492 -0.111 25.493 1 80.49 ? C19 A1A0N 805 A 1 HETATM 15 C C20 A1A0N . . . F 6 -18.692 1.101 27.211 1 77.28 ? C20 A1A0N 805 A 1 HETATM 16 N N01 A1A0N . . . F 6 -24.705 -0.202 23.873 1 64.07 ? N01 A1A0N 805 A 1 HETATM 17 N N02 A1A0N . . . F 6 -26.504 1.293 23.787 1 63.32 ? N02 A1A0N 805 A 1 HETATM 18 N N18 A1A0N . . . F 6 -18.747 -0.027 26.259 1 80.07 ? N18 A1A0N 805 A 1 HETATM 19 CL CL13 A1A0N . . . F 6 -20.893 -5.139 24.979 1 86.65 ? CL13 A1A0N 805 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 19 #