data_9CVO
#
_model_server_result.job_id            r3nPdS_CUCK3fV8zpsMJXg 
_model_server_result.datetime_utc      '2025-06-18 14:12:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":801}' 
#
_entry.id    9CVO 
#
_exptl.entry_id    9CVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CVO 
_cell.length_a            48.764 
_cell.length_b            113.015 
_cell.length_c            163.145 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 200 n n 
CHA C4D HEM doub 201 n n 
CHA HHA HEM sing 202 n n 
CHB C4A HEM sing 203 n n 
CHB C1B HEM doub 204 n n 
CHB HHB HEM sing 205 n n 
CHC C4B HEM sing 206 n n 
CHC C1C HEM doub 207 n n 
CHC HHC HEM sing 208 n n 
CHD C4C HEM doub 209 n n 
CHD C1D HEM sing 210 n n 
CHD HHD HEM sing 211 n n 
C1A C2A HEM doub 212 n y 
C1A NA HEM sing 213 n y 
C2A C3A HEM sing 214 n y 
C2A CAA HEM sing 215 n n 
C3A C4A HEM doub 216 n y 
C3A CMA HEM sing 217 n n 
C4A NA HEM sing 218 n y 
CMA HMA HEM sing 219 n n 
CMA HMAA HEM sing 220 n n 
CMA HMAB HEM sing 221 n n 
CAA CBA HEM sing 222 n n 
CAA HAA HEM sing 223 n n 
CAA HAAA HEM sing 224 n n 
CBA CGA HEM sing 225 n n 
CBA HBA HEM sing 226 n n 
CBA HBAA HEM sing 227 n n 
CGA O1A HEM doub 228 n n 
CGA O2A HEM sing 229 n n 
C1B C2B HEM sing 230 n n 
C1B NB HEM sing 231 n n 
C2B C3B HEM doub 232 n n 
C2B CMB HEM sing 233 n n 
C3B C4B HEM sing 234 n n 
C3B CAB HEM sing 235 n n 
C4B NB HEM doub 236 n n 
CMB HMB HEM sing 237 n n 
CMB HMBA HEM sing 238 n n 
CMB HMBB HEM sing 239 n n 
CAB CBB HEM doub 240 n n 
CAB HAB HEM sing 241 n n 
CBB HBB HEM sing 242 n n 
CBB HBBA HEM sing 243 n n 
C1C C2C HEM sing 244 n y 
C1C NC HEM sing 245 n y 
C2C C3C HEM doub 246 n y 
C2C CMC HEM sing 247 n n 
C3C C4C HEM sing 248 n y 
C3C CAC HEM sing 249 n n 
C4C NC HEM sing 250 n y 
CMC HMC HEM sing 251 n n 
CMC HMCA HEM sing 252 n n 
CMC HMCB HEM sing 253 n n 
CAC CBC HEM doub 254 n n 
CAC HAC HEM sing 255 n n 
CBC HBC HEM sing 256 n n 
CBC HBCA HEM sing 257 n n 
C1D C2D HEM sing 258 n n 
C1D ND HEM doub 259 n n 
C2D C3D HEM doub 260 n n 
C2D CMD HEM sing 261 n n 
C3D C4D HEM sing 262 n n 
C3D CAD HEM sing 263 n n 
C4D ND HEM sing 264 n n 
CMD HMD HEM sing 265 n n 
CMD HMDA HEM sing 266 n n 
CMD HMDB HEM sing 267 n n 
CAD CBD HEM sing 268 n n 
CAD HAD HEM sing 269 n n 
CAD HADA HEM sing 270 n n 
CBD CGD HEM sing 271 n n 
CBD HBD HEM sing 272 n n 
CBD HBDA HEM sing 273 n n 
CGD O1D HEM doub 274 n n 
CGD O2D HEM sing 275 n n 
O2A H2A HEM sing 276 n n 
O2D H2D HEM sing 277 n n 
FE NA HEM sing 278 n n 
FE NB HEM sing 279 n n 
FE NC HEM sing 280 n n 
FE ND HEM sing 281 n n 
#
_atom_sites.entry_id                     9CVO 
_atom_sites.fract_transf_matrix[1][1]    0.020507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008848 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 801 750 HEM HEM . 
C 3 H4B A 1 802 760 H4B BH4 . 
D 4 ZN A 1 803 900 ZN ZN . 
E 5 A1A0K A 1 804 800 A1A0K 2V1 . 
F 6 HOH A 1 901 31 HOH HOH . 
F 6 HOH A 2 902 14 HOH HOH . 
F 6 HOH A 3 903 33 HOH HOH . 
F 6 HOH A 4 904 20 HOH HOH . 
F 6 HOH A 5 905 22 HOH HOH . 
F 6 HOH A 6 906 29 HOH HOH . 
F 6 HOH A 7 907 19 HOH HOH . 
F 6 HOH A 8 908 7 HOH HOH . 
F 6 HOH A 9 909 12 HOH HOH . 
F 6 HOH A 10 910 27 HOH HOH . 
F 6 HOH A 11 911 15 HOH HOH . 
F 6 HOH A 12 912 37 HOH HOH . 
F 6 HOH A 13 913 42 HOH HOH . 
F 6 HOH A 14 914 17 HOH HOH . 
F 6 HOH A 15 915 34 HOH HOH . 
F 6 HOH A 16 916 43 HOH HOH . 
F 6 HOH A 17 917 6 HOH HOH . 
F 6 HOH A 18 918 13 HOH HOH . 
F 6 HOH A 19 919 3 HOH HOH . 
F 6 HOH A 20 920 1 HOH HOH . 
F 6 HOH A 21 921 11 HOH HOH . 
F 6 HOH A 22 922 16 HOH HOH . 
F 6 HOH A 23 923 8 HOH HOH . 
F 6 HOH A 24 924 24 HOH HOH . 
F 6 HOH A 25 925 35 HOH HOH . 
F 6 HOH A 26 926 32 HOH HOH . 
F 6 HOH A 27 927 28 HOH HOH . 
F 6 HOH A 28 928 23 HOH HOH . 
F 6 HOH A 29 929 4 HOH HOH . 
F 6 HOH A 30 930 18 HOH HOH . 
F 6 HOH A 31 931 2 HOH HOH . 
F 6 HOH A 32 932 38 HOH HOH . 
F 6 HOH A 33 933 21 HOH HOH . 
F 6 HOH A 34 934 9 HOH HOH . 
F 6 HOH A 35 935 36 HOH HOH . 
F 6 HOH A 36 936 25 HOH HOH . 
F 6 HOH A 37 937 5 HOH HOH . 
F 6 HOH A 38 938 39 HOH HOH . 
F 6 HOH A 39 939 10 HOH HOH . 
F 6 HOH A 40 940 30 HOH HOH . 
F 6 HOH A 41 941 26 HOH HOH . 
F 6 HOH A 42 942 41 HOH HOH . 
F 6 HOH A 43 943 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -24.999 -4.357 26.111 1 56.29 ? CHA HEM 801 A 1 
HETATM 2 C CHB HEM . . . B 2 -28.183 -0.74 25.761 1 64.79 ? CHB HEM 801 A 1 
HETATM 3 C CHC HEM . . . B 2 -29.213 -2.398 21.282 1 61.61 ? CHC HEM 801 A 1 
HETATM 4 C CHD HEM . . . B 2 -27.271 -6.693 22.437 1 58.86 ? CHD HEM 801 A 1 
HETATM 5 C C1A HEM . . . B 2 -25.62 -3.145 26.348 1 57.59 ? C1A HEM 801 A 1 
HETATM 6 C C2A HEM . . . B 2 -25.262 -2.12 27.316 1 66.4 ? C2A HEM 801 A 1 
HETATM 7 C C3A HEM . . . B 2 -26.139 -1.109 27.215 1 66.14 ? C3A HEM 801 A 1 
HETATM 8 C C4A HEM . . . B 2 -27.098 -1.472 26.191 1 62.8 ? C4A HEM 801 A 1 
HETATM 9 C CMA HEM . . . B 2 -26.165 0.209 28.028 1 65.28 ? CMA HEM 801 A 1 
HETATM 10 C CAA HEM . . . B 2 -24.043 -2.177 28.254 1 58.25 ? CAA HEM 801 A 1 
HETATM 11 C CBA HEM . . . B 2 -22.879 -1.767 27.352 1 51.04 ? CBA HEM 801 A 1 
HETATM 12 C CGA HEM . . . B 2 -21.682 -1.627 28.227 1 58.98 ? CGA HEM 801 A 1 
HETATM 13 O O1A HEM . . . B 2 -21.824 -1.095 29.382 1 54.32 ? O1A HEM 801 A 1 
HETATM 14 O O2A HEM . . . B 2 -20.601 -2.054 27.748 1 61.9 ? O2A HEM 801 A 1 
HETATM 15 C C1B HEM . . . B 2 -28.748 -0.842 24.503 1 68.34 ? C1B HEM 801 A 1 
HETATM 16 C C2B HEM . . . B 2 -29.708 0.071 23.912 1 65.29 ? C2B HEM 801 A 1 
HETATM 17 C C3B HEM . . . B 2 -30.015 -0.381 22.694 1 66.59 ? C3B HEM 801 A 1 
HETATM 18 C C4B HEM . . . B 2 -29.242 -1.604 22.43 1 67.43 ? C4B HEM 801 A 1 
HETATM 19 C CMB HEM . . . B 2 -30.298 1.326 24.604 1 63.16 ? CMB HEM 801 A 1 
HETATM 20 C CAB HEM . . . B 2 -31.016 0.353 21.766 1 74.26 ? CAB HEM 801 A 1 
HETATM 21 C CBB HEM . . . B 2 -31.555 -0.22 20.69 1 80.99 ? CBB HEM 801 A 1 
HETATM 22 C C1C HEM . . . B 2 -28.767 -3.703 21.148 1 58.68 ? C1C HEM 801 A 1 
HETATM 23 C C2C HEM . . . B 2 -28.85 -4.555 19.952 1 56.12 ? C2C HEM 801 A 1 
HETATM 24 C C3C HEM . . . B 2 -28.311 -5.761 20.256 1 57.45 ? C3C HEM 801 A 1 
HETATM 25 C C4C HEM . . . B 2 -27.87 -5.709 21.653 1 54.34 ? C4C HEM 801 A 1 
HETATM 26 C CMC HEM . . . B 2 -29.467 -4.043 18.646 1 56.93 ? CMC HEM 801 A 1 
HETATM 27 C CAC HEM . . . B 2 -28.148 -7.031 19.38 1 50.87 ? CAC HEM 801 A 1 
HETATM 28 C CBC HEM . . . B 2 -28.616 -7.135 18.131 1 57.1 ? CBC HEM 801 A 1 
HETATM 29 C C1D HEM . . . B 2 -26.358 -6.393 23.429 1 61.69 ? C1D HEM 801 A 1 
HETATM 30 C C2D HEM . . . B 2 -25.151 -7.114 23.779 1 64.97 ? C2D HEM 801 A 1 
HETATM 31 C C3D HEM . . . B 2 -24.544 -6.467 24.788 1 64.87 ? C3D HEM 801 A 1 
HETATM 32 C C4D HEM . . . B 2 -25.312 -5.289 25.12 1 61.46 ? C4D HEM 801 A 1 
HETATM 33 C CMD HEM . . . B 2 -24.652 -8.413 23.121 1 68.98 ? CMD HEM 801 A 1 
HETATM 34 C CAD HEM . . . B 2 -23.212 -6.83 25.467 1 56.98 ? CAD HEM 801 A 1 
HETATM 35 C CBD HEM . . . B 2 -23.191 -8.085 26.31 1 64.17 ? CBD HEM 801 A 1 
HETATM 36 C CGD HEM . . . B 2 -21.746 -8.225 26.746 1 65.18 ? CGD HEM 801 A 1 
HETATM 37 O O1D HEM . . . B 2 -21.408 -9.268 27.381 1 58.93 ? O1D HEM 801 A 1 
HETATM 38 O O2D HEM . . . B 2 -20.931 -7.294 26.435 1 61.33 ? O2D HEM 801 A 1 
HETATM 39 N NA HEM . . . B 2 -26.751 -2.712 25.705 1 61.13 ? NA HEM 801 A 1 
HETATM 40 N NB HEM . . . B 2 -28.488 -1.841 23.578 1 64.47 ? NB HEM 801 A 1 
HETATM 41 N NC HEM . . . B 2 -28.175 -4.451 22.124 1 58.53 ? NC HEM 801 A 1 
HETATM 42 N ND HEM . . . B 2 -26.413 -5.286 24.263 1 57.06 ? ND HEM 801 A 1 
HETATM 43 FE FE HEM . . . B 2 -27.653 -3.717 24.054 1 56.7 ? FE HEM 801 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#