data_9CVO
#
_model_server_result.job_id            S0eBFeGD7UM1sRkpQdFHAA 
_model_server_result.datetime_utc      '2025-06-18 14:26:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":804}' 
#
_entry.id    9CVO 
#
_exptl.entry_id    9CVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              277.312 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6M)-6-{5-[(dimethylamino)methyl]-2,3-difluorophenyl}-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CVO 
_cell.length_a            48.764 
_cell.length_b            113.015 
_cell.length_c            163.145 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? 
metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
#
_chem_comp.formula           'C15 H17 F2 N3' 
_chem_comp.formula_weight    277.312 
_chem_comp.id                A1A0K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6M)-6-{5-[(dimethylamino)methyl]-2,3-difluorophenyl}-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C04 A1A0K sing 1 n n 
C04 C05 A1A0K doub 2 n y 
C04 C03 A1A0K sing 3 n y 
C05 C06 A1A0K sing 4 n y 
C03 C02 A1A0K doub 5 n y 
F12 C12 A1A0K sing 6 n n 
C06 C11 A1A0K sing 7 n n 
C06 N01 A1A0K doub 8 n y 
C02 N01 A1A0K sing 9 n y 
C02 N02 A1A0K sing 10 n n 
C12 C11 A1A0K doub 11 n y 
C12 C13 A1A0K sing 12 n y 
C11 C16 A1A0K sing 13 n y 
C19 N18 A1A0K sing 14 n n 
F13 C13 A1A0K sing 15 n n 
C13 C14 A1A0K doub 16 n y 
C16 C15 A1A0K doub 17 n y 
C14 C15 A1A0K sing 18 n y 
C15 C17 A1A0K sing 19 n n 
N18 C17 A1A0K sing 20 n n 
N18 C20 A1A0K sing 21 n n 
C14 H1 A1A0K sing 22 n n 
C16 H2 A1A0K sing 23 n n 
C17 H3 A1A0K sing 24 n n 
C17 H4 A1A0K sing 25 n n 
C03 H5 A1A0K sing 26 n n 
C05 H6 A1A0K sing 27 n n 
C07 H7 A1A0K sing 28 n n 
C07 H8 A1A0K sing 29 n n 
C07 H9 A1A0K sing 30 n n 
C19 H10 A1A0K sing 31 n n 
C19 H11 A1A0K sing 32 n n 
C19 H12 A1A0K sing 33 n n 
C20 H13 A1A0K sing 34 n n 
C20 H14 A1A0K sing 35 n n 
C20 H15 A1A0K sing 36 n n 
N02 H16 A1A0K sing 37 n n 
N02 H17 A1A0K sing 38 n n 
#
_atom_sites.entry_id                     9CVO 
_atom_sites.fract_transf_matrix[1][1]    0.020507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008848 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 801 750 HEM HEM . 
C 3 H4B A 1 802 760 H4B BH4 . 
D 4 ZN A 1 803 900 ZN ZN . 
E 5 A1A0K A 1 804 800 A1A0K 2V1 . 
F 6 HOH A 1 901 31 HOH HOH . 
F 6 HOH A 2 902 14 HOH HOH . 
F 6 HOH A 3 903 33 HOH HOH . 
F 6 HOH A 4 904 20 HOH HOH . 
F 6 HOH A 5 905 22 HOH HOH . 
F 6 HOH A 6 906 29 HOH HOH . 
F 6 HOH A 7 907 19 HOH HOH . 
F 6 HOH A 8 908 7 HOH HOH . 
F 6 HOH A 9 909 12 HOH HOH . 
F 6 HOH A 10 910 27 HOH HOH . 
F 6 HOH A 11 911 15 HOH HOH . 
F 6 HOH A 12 912 37 HOH HOH . 
F 6 HOH A 13 913 42 HOH HOH . 
F 6 HOH A 14 914 17 HOH HOH . 
F 6 HOH A 15 915 34 HOH HOH . 
F 6 HOH A 16 916 43 HOH HOH . 
F 6 HOH A 17 917 6 HOH HOH . 
F 6 HOH A 18 918 13 HOH HOH . 
F 6 HOH A 19 919 3 HOH HOH . 
F 6 HOH A 20 920 1 HOH HOH . 
F 6 HOH A 21 921 11 HOH HOH . 
F 6 HOH A 22 922 16 HOH HOH . 
F 6 HOH A 23 923 8 HOH HOH . 
F 6 HOH A 24 924 24 HOH HOH . 
F 6 HOH A 25 925 35 HOH HOH . 
F 6 HOH A 26 926 32 HOH HOH . 
F 6 HOH A 27 927 28 HOH HOH . 
F 6 HOH A 28 928 23 HOH HOH . 
F 6 HOH A 29 929 4 HOH HOH . 
F 6 HOH A 30 930 18 HOH HOH . 
F 6 HOH A 31 931 2 HOH HOH . 
F 6 HOH A 32 932 38 HOH HOH . 
F 6 HOH A 33 933 21 HOH HOH . 
F 6 HOH A 34 934 9 HOH HOH . 
F 6 HOH A 35 935 36 HOH HOH . 
F 6 HOH A 36 936 25 HOH HOH . 
F 6 HOH A 37 937 5 HOH HOH . 
F 6 HOH A 38 938 39 HOH HOH . 
F 6 HOH A 39 939 10 HOH HOH . 
F 6 HOH A 40 940 30 HOH HOH . 
F 6 HOH A 41 941 26 HOH HOH . 
F 6 HOH A 42 942 41 HOH HOH . 
F 6 HOH A 43 943 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 A1A0K . . . E 5 -22.22 -1.511 23.637 1 89.13 ? C11 A1A0K 804 A 1 
HETATM 2 C C12 A1A0K . . . E 5 -21.232 -0.55 23.547 1 98.5 ? C12 A1A0K 804 A 1 
HETATM 3 C C13 A1A0K . . . E 5 -19.957 -0.823 24.001 1 104.6 ? C13 A1A0K 804 A 1 
HETATM 4 C C14 A1A0K . . . E 5 -19.666 -2.073 24.56 1 100.26 ? C14 A1A0K 804 A 1 
HETATM 5 C C15 A1A0K . . . E 5 -20.651 -3.062 24.656 1 94.03 ? C15 A1A0K 804 A 1 
HETATM 6 C C16 A1A0K . . . E 5 -21.936 -2.759 24.191 1 88.88 ? C16 A1A0K 804 A 1 
HETATM 7 C C17 A1A0K . . . E 5 -20.414 -4.445 25.266 1 93.16 ? C17 A1A0K 804 A 1 
HETATM 8 C C02 A1A0K . . . E 5 -25.481 0.205 23.279 1 75.44 ? C02 A1A0K 804 A 1 
HETATM 9 C C03 A1A0K . . . E 5 -26.054 -0.467 22.198 1 73.59 ? C03 A1A0K 804 A 1 
HETATM 10 C C04 A1A0K . . . E 5 -25.357 -1.497 21.58 1 73.92 ? C04 A1A0K 804 A 1 
HETATM 11 C C05 A1A0K . . . E 5 -24.104 -1.848 22.048 1 76.1 ? C05 A1A0K 804 A 1 
HETATM 12 C C06 A1A0K . . . E 5 -23.571 -1.164 23.131 1 81.52 ? C06 A1A0K 804 A 1 
HETATM 13 C C07 A1A0K . . . E 5 -25.931 -2.236 20.405 1 77.66 ? C07 A1A0K 804 A 1 
HETATM 14 C C19 A1A0K . . . E 5 -18.747 -5.313 23.64 1 93.78 ? C19 A1A0K 804 A 1 
HETATM 15 C C20 A1A0K . . . E 5 -18.019 -4.63 25.866 1 91.23 ? C20 A1A0K 804 A 1 
HETATM 16 F F12 A1A0K . . . E 5 -21.502 0.653 23.011 1 100.84 ? F12 A1A0K 804 A 1 
HETATM 17 F F13 A1A0K . . . E 5 -19.019 0.139 23.895 1 111.09 ? F13 A1A0K 804 A 1 
HETATM 18 N N01 A1A0K . . . E 5 -24.253 -0.148 23.714 1 77.13 ? N01 A1A0K 804 A 1 
HETATM 19 N N02 A1A0K . . . E 5 -26.146 1.207 23.901 1 77.99 ? N02 A1A0K 804 A 1 
HETATM 20 N N18 A1A0K . . . E 5 -19.132 -5.178 25.062 1 94.22 ? N18 A1A0K 804 A 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           34 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           357 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#