data_9CVP
#
_model_server_result.job_id            AQhACojiaRPS6nPzbQkeSg 
_model_server_result.datetime_utc      '2025-08-03 04:54:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":802}' 
#
_entry.id    9CVP 
#
_exptl.entry_id    9CVP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5,6,7,8-TETRAHYDROBIOPTERIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CVP 
_cell.length_a            48.781 
_cell.length_b            113.364 
_cell.length_c            164.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C9 H15 N5 O3' 
_chem_comp.formula_weight    241.247 
_chem_comp.id                H4B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5,6,7,8-TETRAHYDROBIOPTERIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 H4B doub 167 n y 
N1 C8A H4B sing 168 n y 
C2 N2 H4B sing 169 n n 
C2 N3 H4B sing 170 n y 
N2 HN21 H4B sing 171 n n 
N2 HN22 H4B sing 172 n n 
N3 C4 H4B sing 173 n y 
N3 HN3 H4B sing 174 n n 
C4 O4 H4B doub 175 n n 
C4 C4A H4B sing 176 n y 
C4A C8A H4B doub 177 n y 
C4A N5 H4B sing 178 n n 
C8A N8 H4B sing 179 n n 
N5 C6 H4B sing 180 n n 
N5 HN5 H4B sing 181 n n 
N8 C7 H4B sing 182 n n 
N8 HN8 H4B sing 183 n n 
C6 C7 H4B sing 184 n n 
C6 C9 H4B sing 185 n n 
C6 H6 H4B sing 186 n n 
C7 H71 H4B sing 187 n n 
C7 H72 H4B sing 188 n n 
C9 O9 H4B sing 189 n n 
C9 C10 H4B sing 190 n n 
C9 H9 H4B sing 191 n n 
O9 HO9 H4B sing 192 n n 
C10 C11 H4B sing 193 n n 
C10 O10 H4B sing 194 n n 
C10 H10 H4B sing 195 n n 
C11 H111 H4B sing 196 n n 
C11 H112 H4B sing 197 n n 
C11 H113 H4B sing 198 n n 
O10 HO0 H4B sing 199 n n 
#
_atom_sites.entry_id                     9CVP 
_atom_sites.fract_transf_matrix[1][1]    0.0205 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 801 750 HEM HEM . 
C 3 H4B A 1 802 760 H4B BH4 . 
D 4 ZN A 1 803 900 ZN ZN . 
E 5 A1AZ9 A 1 804 800 A1AZ9 2V9 . 
F 6 HOH A 1 901 10 HOH HOH . 
F 6 HOH A 2 902 37 HOH HOH . 
F 6 HOH A 3 903 26 HOH HOH . 
F 6 HOH A 4 904 11 HOH HOH . 
F 6 HOH A 5 905 20 HOH HOH . 
F 6 HOH A 6 906 18 HOH HOH . 
F 6 HOH A 7 907 25 HOH HOH . 
F 6 HOH A 8 908 16 HOH HOH . 
F 6 HOH A 9 909 14 HOH HOH . 
F 6 HOH A 10 910 21 HOH HOH . 
F 6 HOH A 11 911 39 HOH HOH . 
F 6 HOH A 12 912 8 HOH HOH . 
F 6 HOH A 13 913 22 HOH HOH . 
F 6 HOH A 14 914 32 HOH HOH . 
F 6 HOH A 15 915 19 HOH HOH . 
F 6 HOH A 16 916 15 HOH HOH . 
F 6 HOH A 17 917 31 HOH HOH . 
F 6 HOH A 18 918 9 HOH HOH . 
F 6 HOH A 19 919 1 HOH HOH . 
F 6 HOH A 20 920 23 HOH HOH . 
F 6 HOH A 21 921 5 HOH HOH . 
F 6 HOH A 22 922 4 HOH HOH . 
F 6 HOH A 23 923 7 HOH HOH . 
F 6 HOH A 24 924 30 HOH HOH . 
F 6 HOH A 25 925 2 HOH HOH . 
F 6 HOH A 26 926 28 HOH HOH . 
F 6 HOH A 27 927 34 HOH HOH . 
F 6 HOH A 28 928 24 HOH HOH . 
F 6 HOH A 29 929 33 HOH HOH . 
F 6 HOH A 30 930 38 HOH HOH . 
F 6 HOH A 31 931 27 HOH HOH . 
F 6 HOH A 32 932 35 HOH HOH . 
F 6 HOH A 33 933 12 HOH HOH . 
F 6 HOH A 34 934 6 HOH HOH . 
F 6 HOH A 35 935 17 HOH HOH . 
F 6 HOH A 36 936 13 HOH HOH . 
F 6 HOH A 37 937 36 HOH HOH . 
F 6 HOH A 38 938 29 HOH HOH . 
F 6 HOH A 39 939 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 H4B . . . C 3 -21.908 -3.099 33.654 1 53.02 ? N1 H4B 802 A 1 
HETATM 2 C C2 H4B . . . C 3 -21.897 -2.565 32.409 1 52.4 ? C2 H4B 802 A 1 
HETATM 3 N N2 H4B . . . C 3 -23.061 -2.157 31.84 1 47.28 ? N2 H4B 802 A 1 
HETATM 4 N N3 H4B . . . C 3 -20.731 -2.433 31.739 1 48.37 ? N3 H4B 802 A 1 
HETATM 5 C C4 H4B . . . C 3 -19.563 -2.846 32.28 1 57.02 ? C4 H4B 802 A 1 
HETATM 6 O O4 H4B . . . C 3 -18.495 -2.733 31.625 1 49.67 ? O4 H4B 802 A 1 
HETATM 7 C C4A H4B . . . C 3 -19.561 -3.398 33.557 1 56.77 ? C4A H4B 802 A 1 
HETATM 8 C C8A H4B . . . C 3 -20.758 -3.508 34.237 1 60.43 ? C8A H4B 802 A 1 
HETATM 9 N N5 H4B . . . C 3 -18.43 -3.823 34.16 1 54.01 ? N5 H4B 802 A 1 
HETATM 10 N N8 H4B . . . C 3 -20.796 -4.033 35.5 1 57.79 ? N8 H4B 802 A 1 
HETATM 11 C C6 H4B . . . C 3 -18.558 -4.83 35.223 1 52.33 ? C6 H4B 802 A 1 
HETATM 12 C C7 H4B . . . C 3 -19.597 -4.4 36.233 1 60.04 ? C7 H4B 802 A 1 
HETATM 13 C C9 H4B . . . C 3 -17.238 -5.059 35.947 1 46.02 ? C9 H4B 802 A 1 
HETATM 14 O O9 H4B . . . C 3 -16.869 -3.772 36.428 1 45.82 ? O9 H4B 802 A 1 
HETATM 15 C C10 H4B . . . C 3 -17.399 -6.073 37.087 1 43.03 ? C10 H4B 802 A 1 
HETATM 16 C C11 H4B . . . C 3 -16.15 -6.237 37.951 1 45.75 ? C11 H4B 802 A 1 
HETATM 17 O O10 H4B . . . C 3 -17.737 -7.364 36.535 1 48.7 ? O10 H4B 802 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           17 
#