data_9CVP
#
_model_server_result.job_id            FASgOSRAUDBTlTfcZrR3mg 
_model_server_result.datetime_utc      '2025-08-03 16:36:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":804}' 
#
_entry.id    9CVP 
#
_exptl.entry_id    9CVP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              295.303 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (6M)-6-(2,3-difluoro-5-{[(2-fluoroethyl)amino]methyl}phenyl)-4-methylpyridin-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CVP 
_cell.length_a            48.781 
_cell.length_b            113.364 
_cell.length_c            164.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 D ZN ZN . A ZN 803 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
#
_chem_comp.formula           'C15 H16 F3 N3' 
_chem_comp.formula_weight    295.303 
_chem_comp.id                A1AZ9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (6M)-6-(2,3-difluoro-5-{[(2-fluoroethyl)amino]methyl}phenyl)-4-methylpyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C04 A1AZ9 sing 1 n n 
C04 C05 A1AZ9 doub 2 n y 
C04 C03 A1AZ9 sing 3 n y 
C05 C06 A1AZ9 sing 4 n y 
C03 C02 A1AZ9 doub 5 n y 
C06 C11 A1AZ9 sing 6 n n 
C06 N01 A1AZ9 doub 7 n y 
C02 N01 A1AZ9 sing 8 n y 
C02 N02 A1AZ9 sing 9 n n 
F12 C12 A1AZ9 sing 10 n n 
C11 C12 A1AZ9 doub 11 n y 
C11 C16 A1AZ9 sing 12 n y 
C12 C13 A1AZ9 sing 13 n y 
C16 C15 A1AZ9 doub 14 n y 
C13 F13 A1AZ9 sing 15 n n 
C13 C14 A1AZ9 doub 16 n y 
C15 C14 A1AZ9 sing 17 n y 
C15 C17 A1AZ9 sing 18 n n 
C17 N18 A1AZ9 sing 19 n n 
C20 C19 A1AZ9 sing 20 n n 
C20 F21 A1AZ9 sing 21 n n 
N18 C19 A1AZ9 sing 22 n n 
C14 H1 A1AZ9 sing 23 n n 
C16 H2 A1AZ9 sing 24 n n 
C17 H3 A1AZ9 sing 25 n n 
C17 H4 A1AZ9 sing 26 n n 
C19 H5 A1AZ9 sing 27 n n 
C19 H6 A1AZ9 sing 28 n n 
C20 H7 A1AZ9 sing 29 n n 
C20 H8 A1AZ9 sing 30 n n 
C03 H9 A1AZ9 sing 31 n n 
C05 H10 A1AZ9 sing 32 n n 
C07 H11 A1AZ9 sing 33 n n 
C07 H12 A1AZ9 sing 34 n n 
C07 H13 A1AZ9 sing 35 n n 
N02 H14 A1AZ9 sing 36 n n 
N02 H15 A1AZ9 sing 37 n n 
N18 H16 A1AZ9 sing 38 n n 
#
_atom_sites.entry_id                     9CVP 
_atom_sites.fract_transf_matrix[1][1]    0.0205 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006096 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 801 750 HEM HEM . 
C 3 H4B A 1 802 760 H4B BH4 . 
D 4 ZN A 1 803 900 ZN ZN . 
E 5 A1AZ9 A 1 804 800 A1AZ9 2V9 . 
F 6 HOH A 1 901 10 HOH HOH . 
F 6 HOH A 2 902 37 HOH HOH . 
F 6 HOH A 3 903 26 HOH HOH . 
F 6 HOH A 4 904 11 HOH HOH . 
F 6 HOH A 5 905 20 HOH HOH . 
F 6 HOH A 6 906 18 HOH HOH . 
F 6 HOH A 7 907 25 HOH HOH . 
F 6 HOH A 8 908 16 HOH HOH . 
F 6 HOH A 9 909 14 HOH HOH . 
F 6 HOH A 10 910 21 HOH HOH . 
F 6 HOH A 11 911 39 HOH HOH . 
F 6 HOH A 12 912 8 HOH HOH . 
F 6 HOH A 13 913 22 HOH HOH . 
F 6 HOH A 14 914 32 HOH HOH . 
F 6 HOH A 15 915 19 HOH HOH . 
F 6 HOH A 16 916 15 HOH HOH . 
F 6 HOH A 17 917 31 HOH HOH . 
F 6 HOH A 18 918 9 HOH HOH . 
F 6 HOH A 19 919 1 HOH HOH . 
F 6 HOH A 20 920 23 HOH HOH . 
F 6 HOH A 21 921 5 HOH HOH . 
F 6 HOH A 22 922 4 HOH HOH . 
F 6 HOH A 23 923 7 HOH HOH . 
F 6 HOH A 24 924 30 HOH HOH . 
F 6 HOH A 25 925 2 HOH HOH . 
F 6 HOH A 26 926 28 HOH HOH . 
F 6 HOH A 27 927 34 HOH HOH . 
F 6 HOH A 28 928 24 HOH HOH . 
F 6 HOH A 29 929 33 HOH HOH . 
F 6 HOH A 30 930 38 HOH HOH . 
F 6 HOH A 31 931 27 HOH HOH . 
F 6 HOH A 32 932 35 HOH HOH . 
F 6 HOH A 33 933 12 HOH HOH . 
F 6 HOH A 34 934 6 HOH HOH . 
F 6 HOH A 35 935 17 HOH HOH . 
F 6 HOH A 36 936 13 HOH HOH . 
F 6 HOH A 37 937 36 HOH HOH . 
F 6 HOH A 38 938 29 HOH HOH . 
F 6 HOH A 39 939 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 A1AZ9 . . . E 5 -19.523 -0.935 23.952 1 68.8 ? C14 A1AZ9 804 A 1 
HETATM 2 C C13 A1AZ9 . . . E 5 -20.084 0.242 23.521 1 69.47 ? C13 A1AZ9 804 A 1 
HETATM 3 C C12 A1AZ9 . . . E 5 -21.435 0.268 23.29 1 61 ? C12 A1AZ9 804 A 1 
HETATM 4 C C11 A1AZ9 . . . E 5 -22.227 -0.85 23.467 1 56.45 ? C11 A1AZ9 804 A 1 
HETATM 5 C C15 A1AZ9 . . . E 5 -20.305 -2.056 24.139 1 58.12 ? C15 A1AZ9 804 A 1 
HETATM 6 C C16 A1AZ9 . . . E 5 -21.673 -2.057 23.9 1 54.27 ? C16 A1AZ9 804 A 1 
HETATM 7 C C17 A1AZ9 . . . E 5 -19.534 -3.249 24.574 1 62.15 ? C17 A1AZ9 804 A 1 
HETATM 8 C C19 A1AZ9 . . . E 5 -19.126 -5.098 25.737 1 76.97 ? C19 A1AZ9 804 A 1 
HETATM 9 C C20 A1AZ9 . . . E 5 -18.093 -4.362 26.565 1 77.74 ? C20 A1AZ9 804 A 1 
HETATM 10 C C02 A1AZ9 . . . E 5 -25.726 0.428 23.443 1 57.66 ? C02 A1AZ9 804 A 1 
HETATM 11 C C03 A1AZ9 . . . E 5 -26.308 -0.384 22.47 1 49.45 ? C03 A1AZ9 804 A 1 
HETATM 12 C C04 A1AZ9 . . . E 5 -25.541 -1.34 21.817 1 55.2 ? C04 A1AZ9 804 A 1 
HETATM 13 C C05 A1AZ9 . . . E 5 -24.209 -1.493 22.163 1 54.17 ? C05 A1AZ9 804 A 1 
HETATM 14 C C06 A1AZ9 . . . E 5 -23.67 -0.685 23.15 1 48.48 ? C06 A1AZ9 804 A 1 
HETATM 15 C C07 A1AZ9 . . . E 5 -26.126 -2.219 20.73 1 53.65 ? C07 A1AZ9 804 A 1 
HETATM 16 F F12 A1AZ9 . . . E 5 -21.998 1.406 22.891 1 80.88 ? F12 A1AZ9 804 A 1 
HETATM 17 F F13 A1AZ9 . . . E 5 -19.328 1.342 23.344 1 77.51 ? F13 A1AZ9 804 A 1 
HETATM 18 F F21 A1AZ9 . . . E 5 -17.003 -5.183 26.61 1 85.86 ? F21 A1AZ9 804 A 1 
HETATM 19 N N01 A1AZ9 . . . E 5 -24.422 0.269 23.766 1 62.15 ? N01 A1AZ9 804 A 1 
HETATM 20 N N02 A1AZ9 . . . E 5 -26.466 1.361 24.095 1 63.26 ? N02 A1AZ9 804 A 1 
HETATM 21 N N18 A1AZ9 . . . E 5 -20.237 -4.196 25.416 1 70.55 ? N18 A1AZ9 804 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#