data_9CVR # _model_server_result.job_id MSH2uiG8paazdzYiO62hOw _model_server_result.datetime_utc '2025-08-02 06:19:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 9CVR # _exptl.entry_id 9CVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CVR _cell.length_a 48.41 _cell.length_b 112.831 _cell.length_c 162.622 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 206 n n CHA C4D HEM doub 207 n n CHA HHA HEM sing 208 n n CHB C4A HEM sing 209 n n CHB C1B HEM doub 210 n n CHB HHB HEM sing 211 n n CHC C4B HEM sing 212 n n CHC C1C HEM doub 213 n n CHC HHC HEM sing 214 n n CHD C4C HEM doub 215 n n CHD C1D HEM sing 216 n n CHD HHD HEM sing 217 n n C1A C2A HEM doub 218 n y C1A NA HEM sing 219 n y C2A C3A HEM sing 220 n y C2A CAA HEM sing 221 n n C3A C4A HEM doub 222 n y C3A CMA HEM sing 223 n n C4A NA HEM sing 224 n y CMA HMA HEM sing 225 n n CMA HMAA HEM sing 226 n n CMA HMAB HEM sing 227 n n CAA CBA HEM sing 228 n n CAA HAA HEM sing 229 n n CAA HAAA HEM sing 230 n n CBA CGA HEM sing 231 n n CBA HBA HEM sing 232 n n CBA HBAA HEM sing 233 n n CGA O1A HEM doub 234 n n CGA O2A HEM sing 235 n n C1B C2B HEM sing 236 n n C1B NB HEM sing 237 n n C2B C3B HEM doub 238 n n C2B CMB HEM sing 239 n n C3B C4B HEM sing 240 n n C3B CAB HEM sing 241 n n C4B NB HEM doub 242 n n CMB HMB HEM sing 243 n n CMB HMBA HEM sing 244 n n CMB HMBB HEM sing 245 n n CAB CBB HEM doub 246 n n CAB HAB HEM sing 247 n n CBB HBB HEM sing 248 n n CBB HBBA HEM sing 249 n n C1C C2C HEM sing 250 n y C1C NC HEM sing 251 n y C2C C3C HEM doub 252 n y C2C CMC HEM sing 253 n n C3C C4C HEM sing 254 n y C3C CAC HEM sing 255 n n C4C NC HEM sing 256 n y CMC HMC HEM sing 257 n n CMC HMCA HEM sing 258 n n CMC HMCB HEM sing 259 n n CAC CBC HEM doub 260 n n CAC HAC HEM sing 261 n n CBC HBC HEM sing 262 n n CBC HBCA HEM sing 263 n n C1D C2D HEM sing 264 n n C1D ND HEM doub 265 n n C2D C3D HEM doub 266 n n C2D CMD HEM sing 267 n n C3D C4D HEM sing 268 n n C3D CAD HEM sing 269 n n C4D ND HEM sing 270 n n CMD HMD HEM sing 271 n n CMD HMDA HEM sing 272 n n CMD HMDB HEM sing 273 n n CAD CBD HEM sing 274 n n CAD HAD HEM sing 275 n n CAD HADA HEM sing 276 n n CBD CGD HEM sing 277 n n CBD HBD HEM sing 278 n n CBD HBDA HEM sing 279 n n CGD O1D HEM doub 280 n n CGD O2D HEM sing 281 n n O2A H2A HEM sing 282 n n O2D H2D HEM sing 283 n n FE NA HEM sing 284 n n FE NB HEM sing 285 n n FE NC HEM sing 286 n n FE ND HEM sing 287 n n # _atom_sites.entry_id 9CVR _atom_sites.fract_transf_matrix[1][1] 0.020657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 A1A0C A 1 803 800 A1A0C 4V7 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 4 HOH HOH . G 7 HOH A 2 902 12 HOH HOH . G 7 HOH A 3 903 26 HOH HOH . G 7 HOH A 4 904 39 HOH HOH . G 7 HOH A 5 905 16 HOH HOH . G 7 HOH A 6 906 13 HOH HOH . G 7 HOH A 7 907 17 HOH HOH . G 7 HOH A 8 908 36 HOH HOH . G 7 HOH A 9 909 27 HOH HOH . G 7 HOH A 10 910 46 HOH HOH . G 7 HOH A 11 911 45 HOH HOH . G 7 HOH A 12 912 50 HOH HOH . G 7 HOH A 13 913 10 HOH HOH . G 7 HOH A 14 914 20 HOH HOH . G 7 HOH A 15 915 15 HOH HOH . G 7 HOH A 16 916 9 HOH HOH . G 7 HOH A 17 917 35 HOH HOH . G 7 HOH A 18 918 49 HOH HOH . G 7 HOH A 19 919 28 HOH HOH . G 7 HOH A 20 920 38 HOH HOH . G 7 HOH A 21 921 40 HOH HOH . G 7 HOH A 22 922 29 HOH HOH . G 7 HOH A 23 923 25 HOH HOH . G 7 HOH A 24 924 30 HOH HOH . G 7 HOH A 25 925 1 HOH HOH . G 7 HOH A 26 926 7 HOH HOH . G 7 HOH A 27 927 31 HOH HOH . G 7 HOH A 28 928 24 HOH HOH . G 7 HOH A 29 929 2 HOH HOH . G 7 HOH A 30 930 47 HOH HOH . G 7 HOH A 31 931 14 HOH HOH . G 7 HOH A 32 932 6 HOH HOH . G 7 HOH A 33 933 33 HOH HOH . G 7 HOH A 34 934 34 HOH HOH . G 7 HOH A 35 935 32 HOH HOH . G 7 HOH A 36 936 11 HOH HOH . G 7 HOH A 37 937 5 HOH HOH . G 7 HOH A 38 938 21 HOH HOH . G 7 HOH A 39 939 23 HOH HOH . G 7 HOH A 40 940 42 HOH HOH . G 7 HOH A 41 941 43 HOH HOH . G 7 HOH A 42 942 37 HOH HOH . G 7 HOH A 43 943 41 HOH HOH . G 7 HOH A 44 944 8 HOH HOH . G 7 HOH A 45 945 19 HOH HOH . G 7 HOH A 46 946 44 HOH HOH . G 7 HOH A 47 947 18 HOH HOH . G 7 HOH A 48 948 3 HOH HOH . G 7 HOH A 49 949 22 HOH HOH . G 7 HOH A 50 950 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -25.007 -4.383 26.073 1 57.03 ? CHA HEM 801 A 1 HETATM 2 C CHB HEM . . . B 2 -28.051 -0.62 25.656 1 59.2 ? CHB HEM 801 A 1 HETATM 3 C CHC HEM . . . B 2 -29.299 -2.358 21.278 1 57.32 ? CHC HEM 801 A 1 HETATM 4 C CHD HEM . . . B 2 -27.057 -6.48 22.205 1 55.02 ? CHD HEM 801 A 1 HETATM 5 C C1A HEM . . . B 2 -25.608 -3.158 26.275 1 55.91 ? C1A HEM 801 A 1 HETATM 6 C C2A HEM . . . B 2 -25.228 -2.146 27.245 1 59.61 ? C2A HEM 801 A 1 HETATM 7 C C3A HEM . . . B 2 -26.052 -1.096 27.13 1 60.71 ? C3A HEM 801 A 1 HETATM 8 C C4A HEM . . . B 2 -27.015 -1.407 26.095 1 57.37 ? C4A HEM 801 A 1 HETATM 9 C CMA HEM . . . B 2 -25.995 0.199 27.968 1 57.23 ? CMA HEM 801 A 1 HETATM 10 C CAA HEM . . . B 2 -24.029 -2.251 28.188 1 57.53 ? CAA HEM 801 A 1 HETATM 11 C CBA HEM . . . B 2 -22.869 -1.85 27.279 1 59.34 ? CBA HEM 801 A 1 HETATM 12 C CGA HEM . . . B 2 -21.621 -1.656 28.087 1 63.58 ? CGA HEM 801 A 1 HETATM 13 O O1A HEM . . . B 2 -21.731 -1.361 29.306 1 59.19 ? O1A HEM 801 A 1 HETATM 14 O O2A HEM . . . B 2 -20.516 -1.801 27.511 1 63.74 ? O2A HEM 801 A 1 HETATM 15 C C1B HEM . . . B 2 -28.638 -0.744 24.407 1 57.59 ? C1B HEM 801 A 1 HETATM 16 C C2B HEM . . . B 2 -29.551 0.201 23.797 1 59.21 ? C2B HEM 801 A 1 HETATM 17 C C3B HEM . . . B 2 -29.906 -0.293 22.605 1 60.81 ? C3B HEM 801 A 1 HETATM 18 C C4B HEM . . . B 2 -29.217 -1.56 22.401 1 59.48 ? C4B HEM 801 A 1 HETATM 19 C CMB HEM . . . B 2 -30.049 1.526 24.419 1 61.61 ? CMB HEM 801 A 1 HETATM 20 C CAB HEM . . . B 2 -30.869 0.42 21.631 1 65 ? CAB HEM 801 A 1 HETATM 21 C CBB HEM . . . B 2 -31.541 -0.247 20.687 1 65.66 ? CBB HEM 801 A 1 HETATM 22 C C1C HEM . . . B 2 -28.785 -3.609 21.087 1 57.98 ? C1C HEM 801 A 1 HETATM 23 C C2C HEM . . . B 2 -28.874 -4.44 19.887 1 55.71 ? C2C HEM 801 A 1 HETATM 24 C C3C HEM . . . B 2 -28.226 -5.594 20.143 1 53.78 ? C3C HEM 801 A 1 HETATM 25 C C4C HEM . . . B 2 -27.743 -5.522 21.516 1 57.81 ? C4C HEM 801 A 1 HETATM 26 C CMC HEM . . . B 2 -29.577 -3.971 18.596 1 56.38 ? CMC HEM 801 A 1 HETATM 27 C CAC HEM . . . B 2 -28.011 -6.864 19.318 1 52.17 ? CAC HEM 801 A 1 HETATM 28 C CBC HEM . . . B 2 -28.792 -7.178 18.277 1 57.23 ? CBC HEM 801 A 1 HETATM 29 C C1D HEM . . . B 2 -26.304 -6.263 23.329 1 54.05 ? C1D HEM 801 A 1 HETATM 30 C C2D HEM . . . B 2 -25.417 -7.231 23.906 1 54.33 ? C2D HEM 801 A 1 HETATM 31 C C3D HEM . . . B 2 -24.839 -6.677 24.99 1 53.76 ? C3D HEM 801 A 1 HETATM 32 C C4D HEM . . . B 2 -25.341 -5.319 25.106 1 53.94 ? C4D HEM 801 A 1 HETATM 33 C CMD HEM . . . B 2 -25.224 -8.662 23.365 1 52.25 ? CMD HEM 801 A 1 HETATM 34 C CAD HEM . . . B 2 -23.816 -7.382 25.93 1 54.64 ? CAD HEM 801 A 1 HETATM 35 C CBD HEM . . . B 2 -22.385 -7.081 25.481 1 57.49 ? CBD HEM 801 A 1 HETATM 36 C CGD HEM . . . B 2 -21.359 -7.724 26.388 1 58.84 ? CGD HEM 801 A 1 HETATM 37 O O1D HEM . . . B 2 -21.714 -8.722 27.074 1 58.12 ? O1D HEM 801 A 1 HETATM 38 O O2D HEM . . . B 2 -20.186 -7.255 26.397 1 53.8 ? O2D HEM 801 A 1 HETATM 39 N NA HEM . . . B 2 -26.708 -2.662 25.613 1 56.04 ? NA HEM 801 A 1 HETATM 40 N NB HEM . . . B 2 -28.454 -1.806 23.536 1 55.92 ? NB HEM 801 A 1 HETATM 41 N NC HEM . . . B 2 -28.102 -4.312 22.019 1 56.56 ? NC HEM 801 A 1 HETATM 42 N ND HEM . . . B 2 -26.24 -5.093 24.084 1 54.85 ? ND HEM 801 A 1 HETATM 43 FE FE HEM . . . B 2 -27.669 -3.684 24.043 1 58.65 ? FE HEM 801 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #