data_9CVR # _model_server_result.job_id coaOBDDij-H7TRNR-foMpA _model_server_result.datetime_utc '2025-08-03 12:54:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":803}' # _entry.id 9CVR # _exptl.entry_id 9CVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.312 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6M)-6-{2,3-difluoro-5-[2-(methylamino)ethyl]phenyl}-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CVR _cell.length_a 48.41 _cell.length_b 112.831 _cell.length_c 162.622 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A SG CYS 30 A CYS 326 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 A SG CYS 35 A CYS 331 1_555 F ZN ZN . A ZN 805 3_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc5 A SG CYS 119 A CYS 415 1_555 B FE HEM . A HEM 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C15 H17 F2 N3' _chem_comp.formula_weight 277.312 _chem_comp.id A1A0C _chem_comp.mon_nstd_flag . _chem_comp.name (6M)-6-{2,3-difluoro-5-[2-(methylamino)ethyl]phenyl}-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C07 C04 A1A0C sing 1 n n C04 C03 A1A0C doub 2 n y C04 C05 A1A0C sing 3 n y C03 C02 A1A0C sing 4 n y C05 C06 A1A0C doub 5 n y F12 C12 A1A0C sing 6 n n C02 N01 A1A0C doub 7 n y C02 N02 A1A0C sing 8 n n C06 N01 A1A0C sing 9 n y C06 C11 A1A0C sing 10 n n C12 C11 A1A0C doub 11 n y C12 C13 A1A0C sing 12 n y C11 C16 A1A0C sing 13 n y F13 C13 A1A0C sing 14 n n C13 C14 A1A0C doub 15 n y C20 N19 A1A0C sing 16 n n C16 C15 A1A0C doub 17 n y C14 C15 A1A0C sing 18 n y C18 N19 A1A0C sing 19 n n C18 C17 A1A0C sing 20 n n C15 C17 A1A0C sing 21 n n C17 H1 A1A0C sing 22 n n C17 H2 A1A0C sing 23 n n C16 H3 A1A0C sing 24 n n C14 H4 A1A0C sing 25 n n C18 H5 A1A0C sing 26 n n C18 H6 A1A0C sing 27 n n C20 H7 A1A0C sing 28 n n C20 H8 A1A0C sing 29 n n C20 H9 A1A0C sing 30 n n C03 H10 A1A0C sing 31 n n C05 H11 A1A0C sing 32 n n C07 H12 A1A0C sing 33 n n C07 H13 A1A0C sing 34 n n C07 H14 A1A0C sing 35 n n N02 H15 A1A0C sing 36 n n N02 H16 A1A0C sing 37 n n N19 H17 A1A0C sing 38 n n # _atom_sites.entry_id 9CVR _atom_sites.fract_transf_matrix[1][1] 0.020657 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 801 750 HEM HEM . C 3 H4B A 1 802 760 H4B BH4 . D 4 A1A0C A 1 803 800 A1A0C 4V7 . E 5 ACT A 1 804 860 ACT ACT . F 6 ZN A 1 805 900 ZN ZN . G 7 HOH A 1 901 4 HOH HOH . G 7 HOH A 2 902 12 HOH HOH . G 7 HOH A 3 903 26 HOH HOH . G 7 HOH A 4 904 39 HOH HOH . G 7 HOH A 5 905 16 HOH HOH . G 7 HOH A 6 906 13 HOH HOH . G 7 HOH A 7 907 17 HOH HOH . G 7 HOH A 8 908 36 HOH HOH . G 7 HOH A 9 909 27 HOH HOH . G 7 HOH A 10 910 46 HOH HOH . G 7 HOH A 11 911 45 HOH HOH . G 7 HOH A 12 912 50 HOH HOH . G 7 HOH A 13 913 10 HOH HOH . G 7 HOH A 14 914 20 HOH HOH . G 7 HOH A 15 915 15 HOH HOH . G 7 HOH A 16 916 9 HOH HOH . G 7 HOH A 17 917 35 HOH HOH . G 7 HOH A 18 918 49 HOH HOH . G 7 HOH A 19 919 28 HOH HOH . G 7 HOH A 20 920 38 HOH HOH . G 7 HOH A 21 921 40 HOH HOH . G 7 HOH A 22 922 29 HOH HOH . G 7 HOH A 23 923 25 HOH HOH . G 7 HOH A 24 924 30 HOH HOH . G 7 HOH A 25 925 1 HOH HOH . G 7 HOH A 26 926 7 HOH HOH . G 7 HOH A 27 927 31 HOH HOH . G 7 HOH A 28 928 24 HOH HOH . G 7 HOH A 29 929 2 HOH HOH . G 7 HOH A 30 930 47 HOH HOH . G 7 HOH A 31 931 14 HOH HOH . G 7 HOH A 32 932 6 HOH HOH . G 7 HOH A 33 933 33 HOH HOH . G 7 HOH A 34 934 34 HOH HOH . G 7 HOH A 35 935 32 HOH HOH . G 7 HOH A 36 936 11 HOH HOH . G 7 HOH A 37 937 5 HOH HOH . G 7 HOH A 38 938 21 HOH HOH . G 7 HOH A 39 939 23 HOH HOH . G 7 HOH A 40 940 42 HOH HOH . G 7 HOH A 41 941 43 HOH HOH . G 7 HOH A 42 942 37 HOH HOH . G 7 HOH A 43 943 41 HOH HOH . G 7 HOH A 44 944 8 HOH HOH . G 7 HOH A 45 945 19 HOH HOH . G 7 HOH A 46 946 44 HOH HOH . G 7 HOH A 47 947 18 HOH HOH . G 7 HOH A 48 948 3 HOH HOH . G 7 HOH A 49 949 22 HOH HOH . G 7 HOH A 50 950 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 A1A0C . . . D 4 -22.117 -1.483 23.528 1 61.25 ? C11 A1A0C 803 A 1 HETATM 2 C C12 A1A0C . . . D 4 -21.153 -0.505 23.394 1 63.59 ? C12 A1A0C 803 A 1 HETATM 3 C C17 A1A0C . . . D 4 -20.091 -4.283 25.109 1 60.81 ? C17 A1A0C 803 A 1 HETATM 4 C C16 A1A0C . . . D 4 -21.79 -2.715 24.084 1 62.92 ? C16 A1A0C 803 A 1 HETATM 5 C C15 A1A0C . . . D 4 -20.481 -2.948 24.507 1 63.27 ? C15 A1A0C 803 A 1 HETATM 6 C C14 A1A0C . . . D 4 -19.514 -1.958 24.361 1 64.41 ? C14 A1A0C 803 A 1 HETATM 7 C C13 A1A0C . . . D 4 -19.856 -0.73 23.811 1 66.08 ? C13 A1A0C 803 A 1 HETATM 8 C C18 A1A0C . . . D 4 -19.09 -4.921 24.145 1 62.74 ? C18 A1A0C 803 A 1 HETATM 9 C C20 A1A0C . . . D 4 -17.735 -6.83 23.615 1 65.92 ? C20 A1A0C 803 A 1 HETATM 10 C C02 A1A0C . . . D 4 -25.442 0.145 23.187 1 58.66 ? C02 A1A0C 803 A 1 HETATM 11 C C03 A1A0C . . . D 4 -26.011 -0.565 22.118 1 57.85 ? C03 A1A0C 803 A 1 HETATM 12 C C04 A1A0C . . . D 4 -25.286 -1.591 21.537 1 56.86 ? C04 A1A0C 803 A 1 HETATM 13 C C05 A1A0C . . . D 4 -24.02 -1.885 22.019 1 56.85 ? C05 A1A0C 803 A 1 HETATM 14 C C06 A1A0C . . . D 4 -23.484 -1.158 23.065 1 60.71 ? C06 A1A0C 803 A 1 HETATM 15 C C07 A1A0C . . . D 4 -25.839 -2.395 20.374 1 54.17 ? C07 A1A0C 803 A 1 HETATM 16 F F12 A1A0C . . . D 4 -21.472 0.683 22.86 1 63.6 ? F12 A1A0C 803 A 1 HETATM 17 F F13 A1A0C . . . D 4 -18.95 0.256 23.662 1 71.96 ? F13 A1A0C 803 A 1 HETATM 18 N N01 A1A0C . . . D 4 -24.197 -0.152 23.622 1 57.96 ? N01 A1A0C 803 A 1 HETATM 19 N N02 A1A0C . . . D 4 -26.136 1.14 23.772 1 59.06 ? N02 A1A0C 803 A 1 HETATM 20 N N19 A1A0C . . . D 4 -18.839 -6.344 24.457 1 63.85 ? N19 A1A0C 803 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #