data_9CXH # _model_server_result.job_id YcXOv4JmkvS38t_i71WxNA _model_server_result.datetime_utc '2024-12-26 08:19:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 9CXH # _exptl.entry_id 9CXH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CXH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 579 A HIS 566 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A NE2 HIS 615 A HIS 602 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A OD2 ASP 616 A ASP 603 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc4 A OD1 ASP 616 A ASP 603 1_555 G MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc5 A OD1 ASP 736 A ASP 723 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc6 F ZN ZN . A ZN 902 1_555 H O3P 5GP . A 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc7 G MG MG . A MG 903 1_555 H O2P 5GP . A 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc8 B NE2 HIS 579 B HIS 566 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 B NE2 HIS 615 B HIS 602 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 B OD2 ASP 616 B ASP 603 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc11 B OD1 ASP 616 B ASP 603 1_555 K MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc12 B OD2 ASP 736 B ASP 723 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc13 J ZN ZN . B ZN 902 1_555 L O3P 5GP . B 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc14 K MG MG . B MG 903 1_555 L O1P 5GP . B 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc15 K MG MG . B MG 903 1_555 L O2P 5GP . B 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 275 n n PA O2A PCG doub 276 n n PA O5' PCG sing 277 n n PA O3' PCG sing 278 n n O1A HO1A PCG sing 279 n n O5' C5' PCG sing 280 n n C5' C4' PCG sing 281 n n C5' "H5'1" PCG sing 282 n n C5' "H5'2" PCG sing 283 n n C4' O4' PCG sing 284 n n C4' C3' PCG sing 285 n n C4' H4' PCG sing 286 n n O4' C1' PCG sing 287 n n C3' O3' PCG sing 288 n n C3' C2' PCG sing 289 n n C3' H3' PCG sing 290 n n C2' O2' PCG sing 291 n n C2' C1' PCG sing 292 n n C2' H2' PCG sing 293 n n O2' HO2' PCG sing 294 n n C1' N9 PCG sing 295 n n C1' H1' PCG sing 296 n n N9 C8 PCG sing 297 n y N9 C4 PCG sing 298 n y C8 N7 PCG doub 299 n y C8 H8 PCG sing 300 n n N7 C5 PCG sing 301 n y C5 C6 PCG sing 302 n n C5 C4 PCG doub 303 n y C6 O6 PCG doub 304 n n C6 N1 PCG sing 305 n n N1 C2 PCG sing 306 n n N1 HN1 PCG sing 307 n n C2 N2 PCG sing 308 n n C2 N3 PCG doub 309 n n N2 HN21 PCG sing 310 n n N2 HN22 PCG sing 311 n n N3 C4 PCG sing 312 n n # _atom_sites.entry_id 9CXH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PCG A 1 901 901 PCG PCG . F 4 ZN A 1 902 903 ZN ZN . G 5 MG A 1 903 904 MG MG . H 6 5GP A 1 904 901 5GP 5GP . I 3 PCG B 1 901 901 PCG PCG . J 4 ZN B 1 902 903 ZN ZN . K 5 MG B 1 903 904 MG MG . L 6 5GP B 1 904 900 5GP 5GP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . E 3 124.905 161.811 186.637 1 143.23 ? PA PCG 901 A 1 HETATM 2 O O1A PCG . . . E 3 125.579 163.099 186.515 1 139.83 ? O1A PCG 901 A 1 HETATM 3 O O2A PCG . . . E 3 125.893 160.744 186.532 1 135.72 ? O2A PCG 901 A 1 HETATM 4 O O5' PCG . . . E 3 123.858 161.644 185.351 1 142.49 ? O5' PCG 901 A 1 HETATM 5 C C5' PCG . . . E 3 122.733 160.629 185.56 1 139.99 ? C5' PCG 901 A 1 HETATM 6 C C4' PCG . . . E 3 122.235 160.922 186.966 1 136.72 ? C4' PCG 901 A 1 HETATM 7 O O4' PCG . . . E 3 121.181 160.051 187.337 1 135.68 ? O4' PCG 901 A 1 HETATM 8 C C3' PCG . . . E 3 123.341 160.689 188.031 1 136.02 ? C3' PCG 901 A 1 HETATM 9 O O3' PCG . . . E 3 124.259 161.718 187.994 1 138.46 ? O3' PCG 901 A 1 HETATM 10 C C2' PCG . . . E 3 122.655 160.62 189.266 1 137.75 ? C2' PCG 901 A 1 HETATM 11 O O2' PCG . . . E 3 122.584 161.944 189.852 1 138.07 ? O2' PCG 901 A 1 HETATM 12 C C1' PCG . . . E 3 121.257 160.136 188.932 1 136.91 ? C1' PCG 901 A 1 HETATM 13 N N9 PCG . . . E 3 121.009 158.937 189.454 1 138.19 ? N9 PCG 901 A 1 HETATM 14 C C8 PCG . . . E 3 121.94 158.047 189.513 1 136.4 ? C8 PCG 901 A 1 HETATM 15 N N7 PCG . . . E 3 121.4 156.904 190.093 1 131.02 ? N7 PCG 901 A 1 HETATM 16 C C5 PCG . . . E 3 119.962 157.349 190.337 1 133.58 ? C5 PCG 901 A 1 HETATM 17 C C6 PCG . . . E 3 118.787 156.717 190.905 1 133.5 ? C6 PCG 901 A 1 HETATM 18 O O6 PCG . . . E 3 118.851 155.402 191.374 1 133.94 ? O6 PCG 901 A 1 HETATM 19 N N1 PCG . . . E 3 117.604 157.418 190.983 1 133.72 ? N1 PCG 901 A 1 HETATM 20 C C2 PCG . . . E 3 117.545 158.786 190.493 1 135.99 ? C2 PCG 901 A 1 HETATM 21 N N2 PCG . . . E 3 116.297 159.52 190.576 1 136.61 ? N2 PCG 901 A 1 HETATM 22 N N3 PCG . . . E 3 118.668 159.407 189.943 1 136.87 ? N3 PCG 901 A 1 HETATM 23 C C4 PCG . . . E 3 119.853 158.679 189.877 1 136.99 ? C4 PCG 901 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #