data_9CXH # _model_server_result.job_id Q7w8IpSSuj2qeetwI0Ikqw _model_server_result.datetime_utc '2024-12-26 07:51:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":904}' # _entry.id 9CXH # _exptl.entry_id 9CXH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 363.221 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CXH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 579 A HIS 566 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 A NE2 HIS 615 A HIS 602 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A OD2 ASP 616 A ASP 603 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc4 A OD1 ASP 616 A ASP 603 1_555 G MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc5 A OD1 ASP 736 A ASP 723 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc6 F ZN ZN . A ZN 902 1_555 H O3P 5GP . A 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc7 G MG MG . A MG 903 1_555 H O2P 5GP . A 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc8 B NE2 HIS 579 B HIS 566 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc9 B NE2 HIS 615 B HIS 602 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc10 B OD2 ASP 616 B ASP 603 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc11 B OD1 ASP 616 B ASP 603 1_555 K MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc12 B OD2 ASP 736 B ASP 723 1_555 J ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc13 J ZN ZN . B ZN 902 1_555 L O3P 5GP . B 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc14 K MG MG . B MG 903 1_555 L O1P 5GP . B 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc15 K MG MG . B MG 903 1_555 L O2P 5GP . B 5GP 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 9CXH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PCG A 1 901 901 PCG PCG . F 4 ZN A 1 902 903 ZN ZN . G 5 MG A 1 903 904 MG MG . H 6 5GP A 1 904 901 5GP 5GP . I 3 PCG B 1 901 901 PCG PCG . J 4 ZN B 1 902 903 ZN ZN . K 5 MG B 1 903 904 MG MG . L 6 5GP B 1 904 900 5GP 5GP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . L 6 117.247 149.065 107.998 1 118.37 ? P 5GP 904 B 1 HETATM 2 O O1P 5GP . . . L 6 117.578 147.653 108.412 1 112.04 ? O1P 5GP 904 B 1 HETATM 3 O O2P 5GP . . . L 6 118.055 150.109 108.725 1 105.16 ? O2P 5GP 904 B 1 HETATM 4 O O3P 5GP . . . L 6 117.122 149.27 106.51 1 96.14 ? O3P 5GP 904 B 1 HETATM 5 O O5' 5GP . . . L 6 115.764 149.277 108.536 1 111.88 ? O5' 5GP 904 B 1 HETATM 6 C C5' 5GP . . . L 6 114.804 149.997 107.778 1 96.04 ? C5' 5GP 904 B 1 HETATM 7 C C4' 5GP . . . L 6 113.446 149.349 107.866 1 103.83 ? C4' 5GP 904 B 1 HETATM 8 O O4' 5GP . . . L 6 112.465 150.16 107.177 1 101.98 ? O4' 5GP 904 B 1 HETATM 9 C C3' 5GP . . . L 6 113.323 147.992 107.2 1 107.96 ? C3' 5GP 904 B 1 HETATM 10 O O3' 5GP . . . L 6 113.841 146.939 107.994 1 110.61 ? O3' 5GP 904 B 1 HETATM 11 C C2' 5GP . . . L 6 111.827 147.879 106.941 1 106.33 ? C2' 5GP 904 B 1 HETATM 12 O O2' 5GP . . . L 6 111.146 147.47 108.118 1 106.75 ? O2' 5GP 904 B 1 HETATM 13 C C1' 5GP . . . L 6 111.448 149.334 106.649 1 96.9 ? C1' 5GP 904 B 1 HETATM 14 N N9 5GP . . . L 6 111.34 149.596 105.203 1 94.84 ? N9 5GP 904 B 1 HETATM 15 C C8 5GP . . . L 6 112.324 150.049 104.418 1 104.22 ? C8 5GP 904 B 1 HETATM 16 N N7 5GP . . . L 6 111.857 150.181 103.158 1 106.41 ? N7 5GP 904 B 1 HETATM 17 C C5 5GP . . . L 6 110.563 149.811 103.165 1 102.06 ? C5 5GP 904 B 1 HETATM 18 C C6 5GP . . . L 6 109.593 149.741 102.18 1 102.87 ? C6 5GP 904 B 1 HETATM 19 O O6 5GP . . . L 6 109.869 150.067 101.006 1 103.84 ? O6 5GP 904 B 1 HETATM 20 N N1 5GP . . . L 6 108.364 149.324 102.496 1 104.03 ? N1 5GP 904 B 1 HETATM 21 C C2 5GP . . . L 6 108.059 148.974 103.751 1 103.75 ? C2 5GP 904 B 1 HETATM 22 N N2 5GP . . . L 6 106.804 148.555 104.039 1 101.23 ? N2 5GP 904 B 1 HETATM 23 N N3 5GP . . . L 6 108.985 149.031 104.734 1 99.68 ? N3 5GP 904 B 1 HETATM 24 C C4 5GP . . . L 6 110.24 149.451 104.459 1 97.77 ? C4 5GP 904 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #