data_9CXI # _model_server_result.job_id 1GbjZEWnEceE6mnwwYUnbQ _model_server_result.datetime_utc '2024-12-23 06:11:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9cxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":903}' # _entry.id 9CXI # _exptl.entry_id 9CXI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 345.205 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CXI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 579 A HIS 566 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A NE2 HIS 615 A HIS 602 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc3 A OD1 ASP 616 A ASP 603 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A OD2 ASP 616 A ASP 603 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 A OD1 ASP 616 A ASP 603 1_555 F MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc6 A OD2 ASP 616 A ASP 603 1_555 F MG MG . A MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc7 A OD1 ASP 736 A ASP 723 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc8 A OD2 ASP 736 A ASP 723 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc9 B NE2 HIS 579 B HIS 566 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc10 B NE2 HIS 615 B HIS 602 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc11 B OD2 ASP 616 B ASP 603 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc12 B OD1 ASP 616 B ASP 603 1_555 I MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc13 B OD1 ASP 736 B ASP 723 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 235 n n PA O2A PCG doub 236 n n PA O5' PCG sing 237 n n PA O3' PCG sing 238 n n O1A HO1A PCG sing 239 n n O5' C5' PCG sing 240 n n C5' C4' PCG sing 241 n n C5' "H5'1" PCG sing 242 n n C5' "H5'2" PCG sing 243 n n C4' O4' PCG sing 244 n n C4' C3' PCG sing 245 n n C4' H4' PCG sing 246 n n O4' C1' PCG sing 247 n n C3' O3' PCG sing 248 n n C3' C2' PCG sing 249 n n C3' H3' PCG sing 250 n n C2' O2' PCG sing 251 n n C2' C1' PCG sing 252 n n C2' H2' PCG sing 253 n n O2' HO2' PCG sing 254 n n C1' N9 PCG sing 255 n n C1' H1' PCG sing 256 n n N9 C8 PCG sing 257 n y N9 C4 PCG sing 258 n y C8 N7 PCG doub 259 n y C8 H8 PCG sing 260 n n N7 C5 PCG sing 261 n y C5 C6 PCG sing 262 n n C5 C4 PCG doub 263 n y C6 O6 PCG doub 264 n n C6 N1 PCG sing 265 n n N1 C2 PCG sing 266 n n N1 HN1 PCG sing 267 n n C2 N2 PCG sing 268 n n C2 N3 PCG doub 269 n n N2 HN21 PCG sing 270 n n N2 HN22 PCG sing 271 n n N3 C4 PCG sing 272 n n # _atom_sites.entry_id 9CXI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 901 903 ZN ZN . F 4 MG A 1 902 904 MG MG . G 5 PCG A 1 903 901 PCG PCG . H 3 ZN B 1 901 903 ZN ZN . I 4 MG B 1 902 904 MG MG . J 5 PCG B 1 903 901 PCG PCG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . J 5 124.9 162.238 81.161 1 145.66 ? PA PCG 903 B 1 HETATM 2 O O1A PCG . . . J 5 123.824 163.362 80.939 1 142.2 ? O1A PCG 903 B 1 HETATM 3 O O2A PCG . . . J 5 124.322 160.995 81.691 1 140.33 ? O2A PCG 903 B 1 HETATM 4 O O5' PCG . . . J 5 126.128 162.931 81.941 1 144.88 ? O5' PCG 903 B 1 HETATM 5 C C5' PCG . . . J 5 127.497 162.891 81.632 1 141.88 ? C5' PCG 903 B 1 HETATM 6 C C4' PCG . . . J 5 127.669 163.105 80.145 1 139.92 ? C4' PCG 903 B 1 HETATM 7 O O4' PCG . . . J 5 128.934 163.065 79.577 1 139.32 ? O4' PCG 903 B 1 HETATM 8 C C3' PCG . . . J 5 126.884 162.07 79.416 1 138.11 ? C3' PCG 903 B 1 HETATM 9 O O3' PCG . . . J 5 125.561 162.239 79.693 1 140.6 ? O3' PCG 903 B 1 HETATM 10 C C2' PCG . . . J 5 127.229 162.514 77.978 1 140.64 ? C2' PCG 903 B 1 HETATM 11 O O2' PCG . . . J 5 126.421 163.535 77.531 1 141.18 ? O2' PCG 903 B 1 HETATM 12 C C1' PCG . . . J 5 128.748 162.994 78.179 1 141.7 ? C1' PCG 903 B 1 HETATM 13 N N9 PCG . . . J 5 129.782 162.119 77.62 1 142.08 ? N9 PCG 903 B 1 HETATM 14 C C8 PCG . . . J 5 129.647 160.734 77.359 1 142.5 ? C8 PCG 903 B 1 HETATM 15 N N7 PCG . . . J 5 130.759 160.194 76.849 1 141.08 ? N7 PCG 903 B 1 HETATM 16 C C5 PCG . . . J 5 131.668 161.256 76.763 1 140.22 ? C5 PCG 903 B 1 HETATM 17 C C6 PCG . . . J 5 132.989 161.341 76.314 1 139.09 ? C6 PCG 903 B 1 HETATM 18 O O6 PCG . . . J 5 133.586 160.236 75.86 1 137.86 ? O6 PCG 903 B 1 HETATM 19 N N1 PCG . . . J 5 133.676 162.506 76.328 1 140.49 ? N1 PCG 903 B 1 HETATM 20 C C2 PCG . . . J 5 132.988 163.611 76.815 1 142.87 ? C2 PCG 903 B 1 HETATM 21 N N2 PCG . . . J 5 133.71 164.801 76.821 1 142.42 ? N2 PCG 903 B 1 HETATM 22 N N3 PCG . . . J 5 131.701 163.674 77.283 1 140.05 ? N3 PCG 903 B 1 HETATM 23 C C4 PCG . . . J 5 131.074 162.465 77.24 1 139.78 ? C4 PCG 903 B 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #