data_9CYC
#
_model_server_result.job_id            tFqUFXG6x6XgoMfThT3GvA 
_model_server_result.datetime_utc      '2025-07-13 19:30:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9cyc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    9CYC 
#
_exptl.entry_id    9CYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9CYC 
_cell.length_a            66.576 
_cell.length_b            71.301 
_cell.length_c            177.507 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9CYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    'P 2 2ab (z,x,y)' 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,K 1 1 
B,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 192 A CYS 189 1_555 A SG CYS 195 A CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 B SG CYS 192 B CYS 189 1_555 B SG CYS 195 B CYS 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 196 n n 
C1 C2 GOL sing 197 n n 
C1 H11 GOL sing 198 n n 
C1 H12 GOL sing 199 n n 
O1 HO1 GOL sing 200 n n 
C2 O2 GOL sing 201 n n 
C2 C3 GOL sing 202 n n 
C2 H2 GOL sing 203 n n 
O2 HO2 GOL sing 204 n n 
C3 O3 GOL sing 205 n n 
C3 H31 GOL sing 206 n n 
C3 H32 GOL sing 207 n n 
O3 HO3 GOL sing 208 n n 
#
_atom_sites.entry_id                     9CYC 
_atom_sites.fract_transf_matrix[1][1]    0.01502 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014025 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005634 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1A0S A 1 401 401 A1A0S 271 . 
D 3 ACY A 1 402 402 ACY ACT . 
E 4 GOL A 1 403 403 GOL GOL . 
F 4 GOL A 1 404 404 GOL GOL . 
G 4 GOL A 1 405 403 GOL GOL . 
H 2 A1A0S B 1 401 401 A1A0S 271 . 
I 3 ACY B 1 402 402 ACY ACT . 
J 4 GOL B 1 403 404 GOL GOL . 
K 5 HOH A 1 501 2 HOH HOH . 
K 5 HOH A 2 502 178 HOH HOH . 
K 5 HOH A 3 503 6 HOH HOH . 
K 5 HOH A 4 504 41 HOH HOH . 
K 5 HOH A 5 505 11 HOH HOH . 
K 5 HOH A 6 506 32 HOH HOH . 
K 5 HOH A 7 507 20 HOH HOH . 
K 5 HOH A 8 508 181 HOH HOH . 
K 5 HOH A 9 509 40 HOH HOH . 
K 5 HOH A 10 510 96 HOH HOH . 
K 5 HOH A 11 511 143 HOH HOH . 
K 5 HOH A 12 512 66 HOH HOH . 
K 5 HOH A 13 513 73 HOH HOH . 
K 5 HOH A 14 514 5 HOH HOH . 
K 5 HOH A 15 515 8 HOH HOH . 
K 5 HOH A 16 516 16 HOH HOH . 
K 5 HOH A 17 517 85 HOH HOH . 
K 5 HOH A 18 518 149 HOH HOH . 
K 5 HOH A 19 519 3 HOH HOH . 
K 5 HOH A 20 520 42 HOH HOH . 
K 5 HOH A 21 521 94 HOH HOH . 
K 5 HOH A 22 522 60 HOH HOH . 
K 5 HOH A 23 523 36 HOH HOH . 
K 5 HOH A 24 524 95 HOH HOH . 
K 5 HOH A 25 525 51 HOH HOH . 
K 5 HOH A 26 526 62 HOH HOH . 
K 5 HOH A 27 527 63 HOH HOH . 
K 5 HOH A 28 528 54 HOH HOH . 
K 5 HOH A 29 529 118 HOH HOH . 
K 5 HOH A 30 530 91 HOH HOH . 
K 5 HOH A 31 531 183 HOH HOH . 
K 5 HOH A 32 532 48 HOH HOH . 
K 5 HOH A 33 533 29 HOH HOH . 
K 5 HOH A 34 534 133 HOH HOH . 
K 5 HOH A 35 535 18 HOH HOH . 
K 5 HOH A 36 536 113 HOH HOH . 
K 5 HOH A 37 537 23 HOH HOH . 
K 5 HOH A 38 538 13 HOH HOH . 
K 5 HOH A 39 539 38 HOH HOH . 
K 5 HOH A 40 540 33 HOH HOH . 
K 5 HOH A 41 541 176 HOH HOH . 
K 5 HOH A 42 542 97 HOH HOH . 
K 5 HOH A 43 543 102 HOH HOH . 
K 5 HOH A 44 544 37 HOH HOH . 
K 5 HOH A 45 545 152 HOH HOH . 
K 5 HOH A 46 546 93 HOH HOH . 
K 5 HOH A 47 547 140 HOH HOH . 
K 5 HOH A 48 548 104 HOH HOH . 
K 5 HOH A 49 549 81 HOH HOH . 
K 5 HOH A 50 550 107 HOH HOH . 
K 5 HOH A 51 551 129 HOH HOH . 
K 5 HOH A 52 552 188 HOH HOH . 
K 5 HOH A 53 553 53 HOH HOH . 
K 5 HOH A 54 554 24 HOH HOH . 
K 5 HOH A 55 555 15 HOH HOH . 
K 5 HOH A 56 556 61 HOH HOH . 
K 5 HOH A 57 557 27 HOH HOH . 
K 5 HOH A 58 558 185 HOH HOH . 
K 5 HOH A 59 559 58 HOH HOH . 
K 5 HOH A 60 560 187 HOH HOH . 
K 5 HOH A 61 561 65 HOH HOH . 
K 5 HOH A 62 562 56 HOH HOH . 
K 5 HOH A 63 563 55 HOH HOH . 
K 5 HOH A 64 564 71 HOH HOH . 
K 5 HOH A 65 565 99 HOH HOH . 
K 5 HOH A 66 566 121 HOH HOH . 
K 5 HOH A 67 567 168 HOH HOH . 
K 5 HOH A 68 568 39 HOH HOH . 
K 5 HOH A 69 569 144 HOH HOH . 
K 5 HOH A 70 570 148 HOH HOH . 
K 5 HOH A 71 571 44 HOH HOH . 
K 5 HOH A 72 572 136 HOH HOH . 
K 5 HOH A 73 573 78 HOH HOH . 
K 5 HOH A 74 574 167 HOH HOH . 
K 5 HOH A 75 575 134 HOH HOH . 
K 5 HOH A 76 576 174 HOH HOH . 
K 5 HOH A 77 577 67 HOH HOH . 
K 5 HOH A 78 578 7 HOH HOH . 
K 5 HOH A 79 579 59 HOH HOH . 
K 5 HOH A 80 580 179 HOH HOH . 
K 5 HOH A 81 581 30 HOH HOH . 
K 5 HOH A 82 582 114 HOH HOH . 
K 5 HOH A 83 583 186 HOH HOH . 
K 5 HOH A 84 584 130 HOH HOH . 
K 5 HOH A 85 585 159 HOH HOH . 
K 5 HOH A 86 586 120 HOH HOH . 
K 5 HOH A 87 587 139 HOH HOH . 
K 5 HOH A 88 588 146 HOH HOH . 
K 5 HOH A 89 589 115 HOH HOH . 
K 5 HOH A 90 590 175 HOH HOH . 
K 5 HOH A 91 591 170 HOH HOH . 
K 5 HOH A 92 592 156 HOH HOH . 
K 5 HOH A 93 593 126 HOH HOH . 
K 5 HOH A 94 594 158 HOH HOH . 
K 5 HOH A 95 595 151 HOH HOH . 
L 5 HOH B 1 501 46 HOH HOH . 
L 5 HOH B 2 502 1 HOH HOH . 
L 5 HOH B 3 503 31 HOH HOH . 
L 5 HOH B 4 504 154 HOH HOH . 
L 5 HOH B 5 505 82 HOH HOH . 
L 5 HOH B 6 506 72 HOH HOH . 
L 5 HOH B 7 507 75 HOH HOH . 
L 5 HOH B 8 508 21 HOH HOH . 
L 5 HOH B 9 509 160 HOH HOH . 
L 5 HOH B 10 510 74 HOH HOH . 
L 5 HOH B 11 511 166 HOH HOH . 
L 5 HOH B 12 512 35 HOH HOH . 
L 5 HOH B 13 513 177 HOH HOH . 
L 5 HOH B 14 514 45 HOH HOH . 
L 5 HOH B 15 515 173 HOH HOH . 
L 5 HOH B 16 516 4 HOH HOH . 
L 5 HOH B 17 517 22 HOH HOH . 
L 5 HOH B 18 518 90 HOH HOH . 
L 5 HOH B 19 519 108 HOH HOH . 
L 5 HOH B 20 520 49 HOH HOH . 
L 5 HOH B 21 521 98 HOH HOH . 
L 5 HOH B 22 522 157 HOH HOH . 
L 5 HOH B 23 523 10 HOH HOH . 
L 5 HOH B 24 524 12 HOH HOH . 
L 5 HOH B 25 525 87 HOH HOH . 
L 5 HOH B 26 526 9 HOH HOH . 
L 5 HOH B 27 527 19 HOH HOH . 
L 5 HOH B 28 528 84 HOH HOH . 
L 5 HOH B 29 529 141 HOH HOH . 
L 5 HOH B 30 530 47 HOH HOH . 
L 5 HOH B 31 531 182 HOH HOH . 
L 5 HOH B 32 532 68 HOH HOH . 
L 5 HOH B 33 533 180 HOH HOH . 
L 5 HOH B 34 534 150 HOH HOH . 
L 5 HOH B 35 535 163 HOH HOH . 
L 5 HOH B 36 536 92 HOH HOH . 
L 5 HOH B 37 537 164 HOH HOH . 
L 5 HOH B 38 538 25 HOH HOH . 
L 5 HOH B 39 539 14 HOH HOH . 
L 5 HOH B 40 540 70 HOH HOH . 
L 5 HOH B 41 541 52 HOH HOH . 
L 5 HOH B 42 542 50 HOH HOH . 
L 5 HOH B 43 543 137 HOH HOH . 
L 5 HOH B 44 544 43 HOH HOH . 
L 5 HOH B 45 545 86 HOH HOH . 
L 5 HOH B 46 546 88 HOH HOH . 
L 5 HOH B 47 547 28 HOH HOH . 
L 5 HOH B 48 548 26 HOH HOH . 
L 5 HOH B 49 549 80 HOH HOH . 
L 5 HOH B 50 550 184 HOH HOH . 
L 5 HOH B 51 551 77 HOH HOH . 
L 5 HOH B 52 552 153 HOH HOH . 
L 5 HOH B 53 553 142 HOH HOH . 
L 5 HOH B 54 554 122 HOH HOH . 
L 5 HOH B 55 555 57 HOH HOH . 
L 5 HOH B 56 556 112 HOH HOH . 
L 5 HOH B 57 557 101 HOH HOH . 
L 5 HOH B 58 558 117 HOH HOH . 
L 5 HOH B 59 559 128 HOH HOH . 
L 5 HOH B 60 560 165 HOH HOH . 
L 5 HOH B 61 561 105 HOH HOH . 
L 5 HOH B 62 562 123 HOH HOH . 
L 5 HOH B 63 563 17 HOH HOH . 
L 5 HOH B 64 564 109 HOH HOH . 
L 5 HOH B 65 565 79 HOH HOH . 
L 5 HOH B 66 566 83 HOH HOH . 
L 5 HOH B 67 567 169 HOH HOH . 
L 5 HOH B 68 568 64 HOH HOH . 
L 5 HOH B 69 569 69 HOH HOH . 
L 5 HOH B 70 570 34 HOH HOH . 
L 5 HOH B 71 571 103 HOH HOH . 
L 5 HOH B 72 572 131 HOH HOH . 
L 5 HOH B 73 573 145 HOH HOH . 
L 5 HOH B 74 574 106 HOH HOH . 
L 5 HOH B 75 575 119 HOH HOH . 
L 5 HOH B 76 576 172 HOH HOH . 
L 5 HOH B 77 577 155 HOH HOH . 
L 5 HOH B 78 578 89 HOH HOH . 
L 5 HOH B 79 579 127 HOH HOH . 
L 5 HOH B 80 580 171 HOH HOH . 
L 5 HOH B 81 581 161 HOH HOH . 
L 5 HOH B 82 582 76 HOH HOH . 
L 5 HOH B 83 583 162 HOH HOH . 
L 5 HOH B 84 584 116 HOH HOH . 
L 5 HOH B 85 585 124 HOH HOH . 
L 5 HOH B 86 586 111 HOH HOH . 
L 5 HOH B 87 587 100 HOH HOH . 
L 5 HOH B 88 588 125 HOH HOH . 
L 5 HOH B 89 589 110 HOH HOH . 
L 5 HOH B 90 590 138 HOH HOH . 
L 5 HOH B 91 591 135 HOH HOH . 
L 5 HOH B 92 592 147 HOH HOH . 
L 5 HOH B 93 593 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 -3.592 -9.219 36.241 1 72.72 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . E 4 -4.284 -10.347 35.763 1 71.6 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . E 4 -2.298 -9.08 35.464 1 94.73 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . E 4 -1.637 -7.916 35.905 1 78.13 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . E 4 -1.425 -10.312 35.658 1 93.99 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . E 4 -0.327 -10.214 34.773 1 92.45 ? O3 GOL 403 A 1 
HETATM 7 H H11 GOL . . . E 4 -3.385 -9.3 37.185 1 87.26 ? H11 GOL 403 A 1 
HETATM 8 H H12 GOL . . . E 4 -4.113 -8.408 36.134 1 87.26 ? H12 GOL 403 A 1 
HETATM 9 H HO1 GOL . . . E 4 -5.117 -10.188 35.812 1 85.92 ? HO1 GOL 403 A 1 
HETATM 10 H H2 GOL . . . E 4 -2.519 -9.021 34.521 1 113.67 ? H2 GOL 403 A 1 
HETATM 11 H HO2 GOL . . . E 4 -1.193 -7.607 35.249 1 93.75 ? HO2 GOL 403 A 1 
HETATM 12 H H31 GOL . . . E 4 -1.951 -11.108 35.484 1 112.79 ? H31 GOL 403 A 1 
HETATM 13 H H32 GOL . . . E 4 -1.133 -10.356 36.582 1 112.79 ? H32 GOL 403 A 1 
HETATM 14 H HO3 GOL . . . E 4 0.239 -10.817 34.972 1 110.94 ? HO3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              163 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#