data_9CZF # _model_server_result.job_id FPOQLhZ7vE5WFc0k-VF74w _model_server_result.datetime_utc '2024-11-23 16:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9czf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":2004}' # _entry.id 9CZF # _exptl.entry_id 9CZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 537.665 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-{5-fluoro-2-[(6S)-5-oxaspiro[2.5]octan-6-yl]phenyl}{(3R)-3-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy]pyrrolidin-1-yl}acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9CZF _cell.length_a 95.84 _cell.length_b 133.13 _cell.length_c 169.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9CZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id V _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 6 4 3 MAN BMA C1 O1 . O6 HO6 . sing 6 ? 6 5 4 MAN MAN C1 O1 . O3 HO3 . sing 7 ? 6 6 4 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 10 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 I 1 NAG I 1 NAG 5 n E NAG 2 I 2 NAG I 2 NAG 5 n E BMA 3 I 3 BMA I 3 BMA 6 n F NAG 1 E 1 NAG E 1 NAG 6 n F NAG 2 E 2 NAG E 2 NAG 6 n F BMA 3 E 3 BMA E 3 BMA 6 n F MAN 4 E 4 MAN E 4 MAN 6 n F MAN 5 E 5 MAN E 5 MAN 6 n F MAN 6 E 6 MAN E 6 MAN 7 n G NAG 1 F 1 NAG F 1 NAG 7 n G NAG 2 F 2 NAG F 2 NAG 7 n G BMA 3 F 3 BMA F 3 BMA 7 n G MAN 4 F 4 MAN F 4 MAN 5 n H NAG 1 G 1 NAG G 1 NAG 5 n H NAG 2 G 2 NAG G 2 NAG 5 n H BMA 3 G 3 BMA G 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 59 A CYS 59 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 108 A CYS 108 1_555 A SG CYS 128 A CYS 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 142 A CYS 142 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 400 A CYS 400 1_555 B SG CYS 266 B CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 461 A CYS 461 1_555 A SG CYS 472 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 478 A CYS 478 1_555 A SG CYS 535 A CYS 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 2 B CYS 6 1_555 B SG CYS 20 B CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 10 B CYS 14 1_555 B SG CYS 433 B CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 B SG CYS 13 B CYS 17 1_555 B SG CYS 38 B CYS 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 23 B CYS 27 1_555 B SG CYS 49 B CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 176 B CYS 180 1_555 B SG CYS 183 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf12 B SG CYS 231 B CYS 235 1_555 B SG CYS 272 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 373 B CYS 377 1_555 B SG CYS 385 B CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf14 B SG CYS 405 B CYS 409 1_555 B SG CYS 431 B CYS 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf15 B SG CYS 435 B CYS 439 1_555 B SG CYS 455 B CYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 B SG CYS 446 B CYS 450 1_555 B SG CYS 458 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 B SG CYS 460 B CYS 464 1_555 B SG CYS 469 B CYS 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 C SG CYS 23 C CYS 23 1_555 C SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf19 C SG CYS 134 C CYS 134 1_555 C SG CYS 194 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf20 C SG CYS 214 C CYS 214 1_555 D SG CYS 133 D CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 D SG CYS 22 D CYS 22 1_555 D SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 D SG CYS 145 D CYS 145 1_555 D SG CYS 200 D CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 44 A ASN 44 1_555 E C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 260 A ASN 260 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 266 A ASN 266 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 239 B ASN 243 1_555 Z C1 NAG . B NAG 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 E O4 NAG . I NAG 1 1_555 E C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 E O4 NAG . I NAG 2 1_555 E C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 F O4 NAG . E NAG 2 1_555 F C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale9 F O6 BMA . E BMA 3 1_555 F C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 F O3 MAN . E MAN 4 1_555 F C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale11 F O6 MAN . E MAN 4 1_555 F C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale12 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale13 G O4 NAG . F NAG 2 1_555 G C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 G O3 BMA . F BMA 3 1_555 G C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 H O4 NAG . G NAG 1 1_555 H C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 H O4 NAG . G NAG 2 1_555 H C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A OD1 ASP 230 A ASP 230 1_555 I CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc2 A OD1 ASN 232 A ASN 232 1_555 I CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A OD1 ASP 234 A ASP 234 1_555 I CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc4 A O ILE 236 A ILE 236 1_555 I CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc5 A OD1 ASP 238 A ASP 238 1_555 I CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 A OD2 ASP 238 A ASP 238 1_555 I CA CA . A CA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc7 A OD1 ASP 284 A ASP 284 1_555 L CA CA . A CA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A OD1 ASN 286 A ASN 286 1_555 L CA CA . A CA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc9 A OD1 ASP 288 A ASP 288 1_555 L CA CA . A CA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc10 A O TYR 290 A TYR 290 1_555 L CA CA . A CA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 A OD1 ASP 292 A ASP 292 1_555 L CA CA . A CA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 A OD2 ASP 292 A ASP 292 1_555 L CA CA . A CA 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc13 A OD1 ASP 349 A ASP 349 1_555 J CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc14 A OD1 ASP 351 A ASP 351 1_555 J CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc15 A OD1 ASP 353 A ASP 353 1_555 J CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc16 A O PHE 355 A PHE 355 1_555 J CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc17 A OD1 ASP 357 A ASP 357 1_555 J CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc18 A OD2 ASP 357 A ASP 357 1_555 J CA CA . A CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc19 A OD1 ASP 413 A ASP 413 1_555 K CA CA . A CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc20 A OD1 ASP 415 A ASP 415 1_555 K CA CA . A CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc21 A OD1 ASN 417 A ASN 417 1_555 K CA CA . A CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc22 A O TYR 419 A TYR 419 1_555 K CA CA . A CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc23 A OD1 ASP 421 A ASP 421 1_555 K CA CA . A CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc24 A OD2 ASP 421 A ASP 421 1_555 K CA CA . A CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc25 I CA CA . A CA 2001 1_555 EA O HOH . A HOH 2106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc26 J CA CA . A CA 2002 1_555 EA O HOH . A HOH 2109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc27 K CA CA . A CA 2003 1_555 EA O HOH . A HOH 2108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc28 L CA CA . A CA 2004 1_555 EA O HOH . A HOH 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc29 B OG SER 121 B SER 125 1_555 S MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc30 B O SER 123 B SER 127 1_555 U CA CA . B CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc31 B OD1 ASP 126 B ASP 130 1_555 U CA CA . B CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc32 B OD2 ASP 126 B ASP 130 1_555 U CA CA . B CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc33 B OD1 ASP 127 B ASP 131 1_555 U CA CA . B CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc34 B OE2 GLU 158 B GLU 162 1_555 T CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc35 B OD1 ASN 214 B ASN 218 1_555 T CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc36 B O ASP 216 B ASP 220 1_555 T CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc37 B OD1 ASP 216 B ASP 220 1_555 T CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc38 B O PRO 218 B PRO 222 1_555 T CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc39 B OE2 GLU 219 B GLU 223 1_555 S MG MG . B MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc40 B OE1 GLU 219 B GLU 223 1_555 T CA CA . B CA 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc41 B O LYS 334 B LYS 338 1_555 U CA CA . B CA 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc42 S MG MG . B MG 2001 1_555 V O01 A1A6I . B A1A6I 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc43 S MG MG . B MG 2001 1_555 FA O HOH . B HOH 2105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc44 S MG MG . B MG 2001 1_555 FA O HOH . B HOH 2110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc45 S MG MG . B MG 2001 1_555 FA O HOH . B HOH 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc46 U CA CA . B CA 2003 1_555 FA O HOH . B HOH 2121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc47 U CA CA . B CA 2003 1_555 FA O HOH . B HOH 2129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? # _chem_comp.formula 'C31 H40 F N3 O4' _chem_comp.formula_weight 537.665 _chem_comp.id A1A6I _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-{5-fluoro-2-[(6S)-5-oxaspiro[2.5]octan-6-yl]phenyl}{(3R)-3-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy]pyrrolidin-1-yl}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MORF-627 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 A1A6I sing 1 n n C20 C21 A1A6I sing 2 n n C19 C18 A1A6I sing 3 n n C21 N22 A1A6I sing 4 n n C18 C23 A1A6I doub 5 n y C18 C17 A1A6I sing 6 n y N22 C17 A1A6I sing 7 n n C23 C24 A1A6I sing 8 n y C17 N16 A1A6I doub 9 n y C24 C15 A1A6I doub 10 n y N16 C15 A1A6I sing 11 n y C15 C14 A1A6I sing 12 n n C37 C36 A1A6I sing 13 n n C37 C35 A1A6I sing 14 n n C36 C35 A1A6I sing 15 n n C14 C13 A1A6I sing 16 n n C13 C12 A1A6I sing 17 n n C35 C38 A1A6I sing 18 n n C35 C34 A1A6I sing 19 n n C38 O39 A1A6I sing 20 n n C11 C12 A1A6I sing 21 n n C11 O10 A1A6I sing 22 n n C34 C33 A1A6I sing 23 n n O39 C32 A1A6I sing 24 n n O10 C08 A1A6I sing 25 n n C08 C07 A1A6I sing 26 n n C08 C09 A1A6I sing 27 n n C33 C32 A1A6I sing 28 n n C32 C31 A1A6I sing 29 n n C07 C06 A1A6I sing 30 n n C09 N05 A1A6I sing 31 n n C31 C30 A1A6I doub 32 n y C31 C25 A1A6I sing 33 n y C30 C29 A1A6I sing 34 n y C06 N05 A1A6I sing 35 n n N05 C04 A1A6I sing 36 n n C04 C25 A1A6I sing 37 n n C04 C02 A1A6I sing 38 n n C25 C26 A1A6I doub 39 n y C29 C27 A1A6I doub 40 n y C26 C27 A1A6I sing 41 n y C27 F28 A1A6I sing 42 n n C02 O03 A1A6I doub 43 n n C02 O01 A1A6I sing 44 n n C13 H1 A1A6I sing 45 n n C13 H2 A1A6I sing 46 n n C14 H3 A1A6I sing 47 n n C14 H4 A1A6I sing 48 n n C19 H5 A1A6I sing 49 n n C19 H6 A1A6I sing 50 n n C20 H7 A1A6I sing 51 n n C20 H8 A1A6I sing 52 n n C21 H9 A1A6I sing 53 n n C21 H10 A1A6I sing 54 n n C23 H11 A1A6I sing 55 n n C24 H12 A1A6I sing 56 n n C26 H13 A1A6I sing 57 n n C04 H14 A1A6I sing 58 n n C06 H15 A1A6I sing 59 n n C06 H16 A1A6I sing 60 n n C07 H17 A1A6I sing 61 n n C07 H18 A1A6I sing 62 n n C08 H19 A1A6I sing 63 n n C09 H20 A1A6I sing 64 n n C09 H21 A1A6I sing 65 n n C11 H22 A1A6I sing 66 n n C11 H23 A1A6I sing 67 n n C12 H24 A1A6I sing 68 n n C12 H25 A1A6I sing 69 n n C29 H26 A1A6I sing 70 n n C30 H27 A1A6I sing 71 n n C32 H28 A1A6I sing 72 n n C33 H29 A1A6I sing 73 n n C33 H30 A1A6I sing 74 n n C34 H31 A1A6I sing 75 n n C34 H32 A1A6I sing 76 n n C36 H33 A1A6I sing 77 n n C36 H34 A1A6I sing 78 n n C37 H35 A1A6I sing 79 n n C37 H36 A1A6I sing 80 n n C38 H37 A1A6I sing 81 n n C38 H38 A1A6I sing 82 n n N22 H40 A1A6I sing 83 n n O01 H41 A1A6I sing 84 n n # _atom_sites.entry_id 9CZF _atom_sites.fract_transf_matrix[1][1] 0.010434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 8 CA A 1 2001 2001 CA CA . J 8 CA A 1 2002 2002 CA CA . K 8 CA A 1 2003 2003 CA CA . L 8 CA A 1 2004 2004 CA CA . M 9 MAN A 1 2005 3270 MAN MAN . N 9 MAN A 1 2006 3271 MAN MAN . O 10 GOL A 1 2007 3 GOL GOL . P 10 GOL A 1 2008 4 GOL GOL . Q 10 GOL A 1 2009 5 GOL GOL . R 10 GOL A 1 2010 9 GOL GOL . S 11 MG B 1 2001 2001 MG MG . T 8 CA B 1 2002 2002 CA CA . U 8 CA B 1 2003 2003 CA CA . V 12 A1A6I B 1 2004 1 A1A6I 027 . W 10 GOL B 1 2005 6 GOL GOL . X 10 GOL B 1 2006 8 GOL GOL . Y 13 ACT B 1 2007 3 ACT ACT . Z 14 NAG B 1 2008 2 NAG NAG . AA 15 CL B 1 2009 1 CL CL . BA 10 GOL C 1 301 1 GOL GOL . CA 10 GOL D 1 301 7 GOL GOL . DA 13 ACT D 1 302 2 ACT ACT . EA 16 HOH A 1 2101 71 HOH HOH . EA 16 HOH A 2 2102 14 HOH HOH . EA 16 HOH A 3 2103 16 HOH HOH . EA 16 HOH A 4 2104 9 HOH HOH . EA 16 HOH A 5 2105 74 HOH HOH . EA 16 HOH A 6 2106 6 HOH HOH . EA 16 HOH A 7 2107 73 HOH HOH . EA 16 HOH A 8 2108 8 HOH HOH . EA 16 HOH A 9 2109 7 HOH HOH . EA 16 HOH A 10 2110 54 HOH HOH . EA 16 HOH A 11 2111 53 HOH HOH . EA 16 HOH A 12 2112 35 HOH HOH . EA 16 HOH A 13 2113 79 HOH HOH . EA 16 HOH A 14 2114 15 HOH HOH . EA 16 HOH A 15 2115 22 HOH HOH . EA 16 HOH A 16 2116 65 HOH HOH . EA 16 HOH A 17 2117 47 HOH HOH . EA 16 HOH A 18 2118 11 HOH HOH . EA 16 HOH A 19 2119 56 HOH HOH . EA 16 HOH A 20 2120 33 HOH HOH . EA 16 HOH A 21 2121 37 HOH HOH . EA 16 HOH A 22 2122 36 HOH HOH . EA 16 HOH A 23 2123 67 HOH HOH . EA 16 HOH A 24 2124 75 HOH HOH . EA 16 HOH A 25 2125 62 HOH HOH . EA 16 HOH A 26 2126 69 HOH HOH . EA 16 HOH A 27 2127 45 HOH HOH . EA 16 HOH A 28 2128 26 HOH HOH . EA 16 HOH A 29 2129 39 HOH HOH . EA 16 HOH A 30 2130 63 HOH HOH . EA 16 HOH A 31 2131 13 HOH HOH . EA 16 HOH A 32 2132 32 HOH HOH . EA 16 HOH A 33 2133 57 HOH HOH . EA 16 HOH A 34 2134 80 HOH HOH . EA 16 HOH A 35 2135 83 HOH HOH . EA 16 HOH A 36 2136 38 HOH HOH . EA 16 HOH A 37 2137 51 HOH HOH . EA 16 HOH A 38 2138 41 HOH HOH . EA 16 HOH A 39 2139 58 HOH HOH . EA 16 HOH A 40 2140 46 HOH HOH . EA 16 HOH A 41 2141 40 HOH HOH . EA 16 HOH A 42 2142 52 HOH HOH . EA 16 HOH A 43 2143 34 HOH HOH . FA 16 HOH B 1 2101 43 HOH HOH . FA 16 HOH B 2 2102 20 HOH HOH . FA 16 HOH B 3 2103 23 HOH HOH . FA 16 HOH B 4 2104 12 HOH HOH . FA 16 HOH B 5 2105 3 HOH HOH . FA 16 HOH B 6 2106 84 HOH HOH . FA 16 HOH B 7 2107 18 HOH HOH . FA 16 HOH B 8 2108 24 HOH HOH . FA 16 HOH B 9 2109 50 HOH HOH . FA 16 HOH B 10 2110 2 HOH HOH . FA 16 HOH B 11 2111 31 HOH HOH . FA 16 HOH B 12 2112 19 HOH HOH . FA 16 HOH B 13 2113 25 HOH HOH . FA 16 HOH B 14 2114 85 HOH HOH . FA 16 HOH B 15 2115 48 HOH HOH . FA 16 HOH B 16 2116 49 HOH HOH . FA 16 HOH B 17 2117 70 HOH HOH . FA 16 HOH B 18 2118 17 HOH HOH . FA 16 HOH B 19 2119 1 HOH HOH . FA 16 HOH B 20 2120 44 HOH HOH . FA 16 HOH B 21 2121 4 HOH HOH . FA 16 HOH B 22 2122 78 HOH HOH . FA 16 HOH B 23 2123 42 HOH HOH . FA 16 HOH B 24 2124 10 HOH HOH . FA 16 HOH B 25 2125 60 HOH HOH . FA 16 HOH B 26 2126 21 HOH HOH . FA 16 HOH B 27 2127 27 HOH HOH . FA 16 HOH B 28 2128 82 HOH HOH . FA 16 HOH B 29 2129 5 HOH HOH . FA 16 HOH B 30 2130 77 HOH HOH . FA 16 HOH B 31 2131 28 HOH HOH . FA 16 HOH B 32 2132 76 HOH HOH . GA 16 HOH D 1 401 30 HOH HOH . GA 16 HOH D 2 402 55 HOH HOH . GA 16 HOH D 3 403 64 HOH HOH . GA 16 HOH D 4 404 86 HOH HOH . GA 16 HOH D 5 405 81 HOH HOH . GA 16 HOH D 6 406 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1A6I . . . V 12 12.708 -47.219 -21.636 1 56.97 ? C13 A1A6I 2004 B 1 HETATM 2 C C14 A1A6I . . . V 12 14.226 -47.12 -21.946 1 59.24 ? C14 A1A6I 2004 B 1 HETATM 3 C C15 A1A6I . . . V 12 14.466 -47.15 -23.477 1 64.94 ? C15 A1A6I 2004 B 1 HETATM 4 C C19 A1A6I . . . V 12 15.165 -47.152 -27.735 1 78.84 ? C19 A1A6I 2004 B 1 HETATM 5 C C20 A1A6I . . . V 12 15.973 -45.951 -28.223 1 79.66 ? C20 A1A6I 2004 B 1 HETATM 6 C C21 A1A6I . . . V 12 15.897 -44.752 -27.293 1 79.66 ? C21 A1A6I 2004 B 1 HETATM 7 C C23 A1A6I . . . V 12 14.112 -48.185 -25.63 1 71.97 ? C23 A1A6I 2004 B 1 HETATM 8 C C24 A1A6I . . . V 12 13.892 -48.171 -24.247 1 67.64 ? C24 A1A6I 2004 B 1 HETATM 9 C C25 A1A6I . . . V 12 5.621 -46.892 -17.22 1 60.97 ? C25 A1A6I 2004 B 1 HETATM 10 C C26 A1A6I . . . V 12 6.193 -47.789 -16.326 1 59.22 ? C26 A1A6I 2004 B 1 HETATM 11 C C27 A1A6I . . . V 12 5.741 -49.105 -16.277 1 57.16 ? C27 A1A6I 2004 B 1 HETATM 12 C C02 A1A6I . . . V 12 5.843 -44.735 -15.962 1 71.23 ? C02 A1A6I 2004 B 1 HETATM 13 C C04 A1A6I . . . V 12 6.116 -45.437 -17.28 1 70.04 ? C04 A1A6I 2004 B 1 HETATM 14 C C06 A1A6I . . . V 12 8.071 -43.938 -17.71 1 68.39 ? C06 A1A6I 2004 B 1 HETATM 15 C C07 A1A6I . . . V 12 9.072 -43.948 -18.969 1 63.96 ? C07 A1A6I 2004 B 1 HETATM 16 C C08 A1A6I . . . V 12 8.878 -45.09 -19.618 1 63.07 ? C08 A1A6I 2004 B 1 HETATM 17 C C09 A1A6I . . . V 12 7.754 -46.015 -18.753 1 66.41 ? C09 A1A6I 2004 B 1 HETATM 18 C C11 A1A6I . . . V 12 10.598 -45.831 -21.087 1 57.91 ? C11 A1A6I 2004 B 1 HETATM 19 C C12 A1A6I . . . V 12 12.151 -45.89 -21.053 1 55.3 ? C12 A1A6I 2004 B 1 HETATM 20 C C17 A1A6I . . . V 12 15.44 -46.181 -25.368 1 74.72 ? C17 A1A6I 2004 B 1 HETATM 21 C C18 A1A6I . . . V 12 14.904 -47.168 -26.194 1 76.2 ? C18 A1A6I 2004 B 1 HETATM 22 C C29 A1A6I . . . V 12 4.717 -49.528 -17.124 1 54.94 ? C29 A1A6I 2004 B 1 HETATM 23 C C30 A1A6I . . . V 12 4.143 -48.63 -18.022 1 56.02 ? C30 A1A6I 2004 B 1 HETATM 24 C C31 A1A6I . . . V 12 4.594 -47.316 -18.069 1 55.58 ? C31 A1A6I 2004 B 1 HETATM 25 C C32 A1A6I . . . V 12 3.976 -46.331 -19.047 1 51.35 ? C32 A1A6I 2004 B 1 HETATM 26 C C33 A1A6I . . . V 12 2.535 -46.732 -19.353 1 52.3 ? C33 A1A6I 2004 B 1 HETATM 27 C C34 A1A6I . . . V 12 1.913 -45.859 -20.369 1 54.83 ? C34 A1A6I 2004 B 1 HETATM 28 C C35 A1A6I . . . V 12 2.753 -45.601 -21.544 1 57.17 ? C35 A1A6I 2004 B 1 HETATM 29 C C36 A1A6I . . . V 12 2.51 -46.465 -22.789 1 58.71 ? C36 A1A6I 2004 B 1 HETATM 30 C C37 A1A6I . . . V 12 2.182 -44.972 -22.824 1 59.68 ? C37 A1A6I 2004 B 1 HETATM 31 C C38 A1A6I . . . V 12 4.221 -45.337 -21.208 1 53.05 ? C38 A1A6I 2004 B 1 HETATM 32 F F28 A1A6I . . . V 12 6.304 -49.983 -15.393 1 58.33 ? F28 A1A6I 2004 B 1 HETATM 33 N N05 A1A6I . . . V 12 7.557 -45.434 -17.564 1 71.29 ? N05 A1A6I 2004 B 1 HETATM 34 N N16 A1A6I . . . V 12 15.204 -46.207 -24.049 1 67.32 ? N16 A1A6I 2004 B 1 HETATM 35 N N22 A1A6I . . . V 12 16.278 -45.091 -25.937 1 77.96 ? N22 A1A6I 2004 B 1 HETATM 36 O O01 A1A6I . . . V 12 6.784 -44.528 -15.143 1 70.92 ? O01 A1A6I 2004 B 1 HETATM 37 O O03 A1A6I . . . V 12 4.669 -44.356 -15.685 1 70.66 ? O03 A1A6I 2004 B 1 HETATM 38 O O10 A1A6I . . . V 12 10.108 -45.795 -19.746 1 61.88 ? O10 A1A6I 2004 B 1 HETATM 39 O O39 A1A6I . . . V 12 4.772 -46.316 -20.263 1 51.13 ? O39 A1A6I 2004 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 414 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #