data_9D17
#
_model_server_result.job_id            jp7v0xTq3ciOLBz57xbEFQ 
_model_server_result.datetime_utc      '2025-07-04 08:46:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9d17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":703}' 
#
_entry.id    9D17 
#
_exptl.entry_id    9D17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.52 
_cell.angle_gamma         90 
_cell.entry_id            9D17 
_cell.length_a            71.84 
_cell.length_b            40.81 
_cell.length_c            101.5 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9D17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 366 1_555 A SG CYS 50 A CYS 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 34 A CYS 396 1_555 A SG CYS 68 A CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf3 A SG CYS 72 A CYS 434 1_555 A SG CYS 190 A CYS 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf4 A SG CYS 236 A CYS 598 1_555 A SG CYS 256 A CYS 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
disulf ? disulf5 A SG CYS 267 A CYS 629 1_555 A SG CYS 298 A CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 179 n n 
C1 C2 GOL sing 180 n n 
C1 H11 GOL sing 181 n n 
C1 H12 GOL sing 182 n n 
O1 HO1 GOL sing 183 n n 
C2 O2 GOL sing 184 n n 
C2 C3 GOL sing 185 n n 
C2 H2 GOL sing 186 n n 
O2 HO2 GOL sing 187 n n 
C3 O3 GOL sing 188 n n 
C3 H31 GOL sing 189 n n 
C3 H32 GOL sing 190 n n 
O3 HO3 GOL sing 191 n n 
#
_atom_sites.entry_id                     9D17 
_atom_sites.fract_transf_matrix[1][1]    0.01392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001838 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024504 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009938 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1A1X A 1 701 1 A1A1X ENI . 
C 3 GOL A 1 702 1 GOL GOL . 
D 3 GOL A 1 703 2 GOL GOL . 
E 4 DMS A 1 704 3 DMS DMS . 
F 4 DMS A 1 705 4 DMS DMS . 
G 4 DMS A 1 706 5 DMS DMS . 
H 5 HOH A 1 801 59 HOH HOH . 
H 5 HOH A 2 802 8 HOH HOH . 
H 5 HOH A 3 803 48 HOH HOH . 
H 5 HOH A 4 804 31 HOH HOH . 
H 5 HOH A 5 805 39 HOH HOH . 
H 5 HOH A 6 806 24 HOH HOH . 
H 5 HOH A 7 807 26 HOH HOH . 
H 5 HOH A 8 808 47 HOH HOH . 
H 5 HOH A 9 809 21 HOH HOH . 
H 5 HOH A 10 810 35 HOH HOH . 
H 5 HOH A 11 811 37 HOH HOH . 
H 5 HOH A 12 812 36 HOH HOH . 
H 5 HOH A 13 813 25 HOH HOH . 
H 5 HOH A 14 814 5 HOH HOH . 
H 5 HOH A 15 815 55 HOH HOH . 
H 5 HOH A 16 816 42 HOH HOH . 
H 5 HOH A 17 817 9 HOH HOH . 
H 5 HOH A 18 818 19 HOH HOH . 
H 5 HOH A 19 819 15 HOH HOH . 
H 5 HOH A 20 820 49 HOH HOH . 
H 5 HOH A 21 821 23 HOH HOH . 
H 5 HOH A 22 822 40 HOH HOH . 
H 5 HOH A 23 823 10 HOH HOH . 
H 5 HOH A 24 824 41 HOH HOH . 
H 5 HOH A 25 825 6 HOH HOH . 
H 5 HOH A 26 826 12 HOH HOH . 
H 5 HOH A 27 827 30 HOH HOH . 
H 5 HOH A 28 828 43 HOH HOH . 
H 5 HOH A 29 829 20 HOH HOH . 
H 5 HOH A 30 830 60 HOH HOH . 
H 5 HOH A 31 831 52 HOH HOH . 
H 5 HOH A 32 832 29 HOH HOH . 
H 5 HOH A 33 833 16 HOH HOH . 
H 5 HOH A 34 834 17 HOH HOH . 
H 5 HOH A 35 835 34 HOH HOH . 
H 5 HOH A 36 836 51 HOH HOH . 
H 5 HOH A 37 837 53 HOH HOH . 
H 5 HOH A 38 838 13 HOH HOH . 
H 5 HOH A 39 839 45 HOH HOH . 
H 5 HOH A 40 840 22 HOH HOH . 
H 5 HOH A 41 841 57 HOH HOH . 
H 5 HOH A 42 842 33 HOH HOH . 
H 5 HOH A 43 843 27 HOH HOH . 
H 5 HOH A 44 844 4 HOH HOH . 
H 5 HOH A 45 845 3 HOH HOH . 
H 5 HOH A 46 846 32 HOH HOH . 
H 5 HOH A 47 847 50 HOH HOH . 
H 5 HOH A 48 848 14 HOH HOH . 
H 5 HOH A 49 849 2 HOH HOH . 
H 5 HOH A 50 850 18 HOH HOH . 
H 5 HOH A 51 851 46 HOH HOH . 
H 5 HOH A 52 852 28 HOH HOH . 
H 5 HOH A 53 853 11 HOH HOH . 
H 5 HOH A 54 854 1 HOH HOH . 
H 5 HOH A 55 855 7 HOH HOH . 
H 5 HOH A 56 856 38 HOH HOH . 
H 5 HOH A 57 857 44 HOH HOH . 
H 5 HOH A 58 858 54 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 2.796 -6.474 22.639 1 34.41 ? C1 GOL 703 A 1 
HETATM 2 O O1 GOL . . . D 3 4.027 -7.209 22.625 1 37.2 ? O1 GOL 703 A 1 
HETATM 3 C C2 GOL . . . D 3 2.784 -5.351 21.522 1 35.5 ? C2 GOL 703 A 1 
HETATM 4 O O2 GOL . . . D 3 3.654 -4.295 21.777 1 32.6 ? O2 GOL 703 A 1 
HETATM 5 C C3 GOL . . . D 3 3.108 -6.055 20.187 1 39.8 ? C3 GOL 703 A 1 
HETATM 6 O O3 GOL . . . D 3 3.085 -5.006 19.213 1 38.22 ? O3 GOL 703 A 1 
HETATM 7 H H11 GOL . . . D 3 2.644 -6.047 23.496 1 41.3 ? H11 GOL 703 A 1 
HETATM 8 H H12 GOL . . . D 3 2.032 -7.053 22.491 1 41.3 ? H12 GOL 703 A 1 
HETATM 9 H HO1 GOL . . . D 3 3.833 -8.036 22.81 1 44.65 ? HO1 GOL 703 A 1 
HETATM 10 H H2 GOL . . . D 3 1.898 -4.958 21.5 1 42.61 ? H2 GOL 703 A 1 
HETATM 11 H HO2 GOL . . . D 3 4.34 -4.613 22.161 1 39.13 ? HO2 GOL 703 A 1 
HETATM 12 H H31 GOL . . . D 3 2.46 -6.757 20.023 1 47.78 ? H31 GOL 703 A 1 
HETATM 13 H H32 GOL . . . D 3 3.964 -6.507 20.256 1 47.78 ? H32 GOL 703 A 1 
HETATM 14 H HO3 GOL . . . D 3 3.387 -5.334 18.484 1 45.88 ? HO3 GOL 703 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#