data_9D20
#
_model_server_result.job_id            EcdCrXPQtObXIQhNbQVQbQ 
_model_server_result.datetime_utc      '2025-07-09 18:17:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9d20 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    9D20 
#
_exptl.entry_id    9D20 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.99 
_cell.angle_gamma         90 
_cell.entry_id            9D20 
_cell.length_a            120.98 
_cell.length_b            52.97 
_cell.length_c            97.99 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9D20 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,J,K,L,M,N,V,W 1 1 
C,D,O,P,Q,R,S,T,U,X,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 O N N 
? 3 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 5 E CYS 29 1_555 A SG CYS 35 E CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 25 E CYS 49 1_555 A SG CYS 53 E CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 60 E CYS 84 1_555 A SG CYS 79 E CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf4 A SG CYS 66 E CYS 90 1_555 A SG CYS 78 E CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf5 A SG CYS 80 E CYS 104 1_555 A SG CYS 85 E CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf6 B SG CYS 4 D CYS 174 1_555 B SG CYS 15 D CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 9 D CYS 179 1_555 B SG CYS 24 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 B SG CYS 26 D CYS 196 1_555 B SG CYS 35 D CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 B SG CYS 42 D CYS 212 1_555 B SG CYS 53 D CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 B SG CYS 47 D CYS 217 1_555 B SG CYS 63 D CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 B SG CYS 65 D CYS 235 1_555 B SG CYS 74 D CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 C SG CYS 5 A CYS 29 1_555 C SG CYS 35 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf13 C SG CYS 25 A CYS 49 1_555 C SG CYS 53 A CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf14 C SG CYS 60 A CYS 84 1_555 C SG CYS 79 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 C SG CYS 66 A CYS 90 1_555 C SG CYS 78 A CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf16 C SG CYS 80 A CYS 104 1_555 C SG CYS 85 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf17 D SG CYS 4 B CYS 174 1_555 D SG CYS 15 B CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf18 D SG CYS 9 B CYS 179 1_555 D SG CYS 24 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf19 D SG CYS 26 B CYS 196 1_555 D SG CYS 35 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf20 D SG CYS 42 B CYS 212 1_555 D SG CYS 53 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf21 D SG CYS 47 B CYS 217 1_555 D SG CYS 63 B CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf22 D SG CYS 65 B CYS 235 1_555 D SG CYS 74 B CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
covale ? covale1 A ND2 ASN 18 E ASN 42 1_555 F C1 NAG . E NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale2 A ND2 ASN 41 E ASN 65 1_555 E C1 NAG . E NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 B OG SER 44 D SER 214 1_555 K C1 BGC . D BGC 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.213 ? 
covale ? covale4 B OG1 THR 52 D THR 222 1_555 J C1 FUC . D FUC 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale5 C ND2 ASN 18 A ASN 42 1_555 P C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? 
covale ? covale6 C ND2 ASN 41 A ASN 65 1_555 O C1 NAG . A NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale7 D OG SER 44 B SER 214 1_555 T C1 BGC . B BGC 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale8 D OG1 THR 52 B THR 222 1_555 S C1 FUC . B FUC 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 274 n n 
C1 O1 NAG sing 275 n n 
C1 O5 NAG sing 276 n n 
C1 H1 NAG sing 277 n n 
C2 C3 NAG sing 278 n n 
C2 N2 NAG sing 279 n n 
C2 H2 NAG sing 280 n n 
C3 C4 NAG sing 281 n n 
C3 O3 NAG sing 282 n n 
C3 H3 NAG sing 283 n n 
C4 C5 NAG sing 284 n n 
C4 O4 NAG sing 285 n n 
C4 H4 NAG sing 286 n n 
C5 C6 NAG sing 287 n n 
C5 O5 NAG sing 288 n n 
C5 H5 NAG sing 289 n n 
C6 O6 NAG sing 290 n n 
C6 H61 NAG sing 291 n n 
C6 H62 NAG sing 292 n n 
C7 C8 NAG sing 293 n n 
C7 N2 NAG sing 294 n n 
C7 O7 NAG doub 295 n n 
C8 H81 NAG sing 296 n n 
C8 H82 NAG sing 297 n n 
C8 H83 NAG sing 298 n n 
N2 HN2 NAG sing 299 n n 
O1 HO1 NAG sing 300 n n 
O3 HO3 NAG sing 301 n n 
O4 HO4 NAG sing 302 n n 
O6 HO6 NAG sing 303 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9D20 
_atom_sites.fract_transf_matrix[1][1]    0.008266 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004581 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018879 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG E 1 201 220 NAG NAG . 
F 3 NAG E 1 202 319 NAG NAG . 
G 4 EDO E 1 203 8 EDO EDO . 
H 5 SO4 E 1 204 3 SO4 SO4 . 
I 5 SO4 E 1 205 5 SO4 SO4 . 
J 6 FUC D 1 1001 1001 FUC FUC . 
K 7 BGC D 1 1002 1101 BGC BGC . 
L 4 EDO D 1 1003 7 EDO EDO . 
M 4 EDO D 1 1004 12 EDO EDO . 
N 5 SO4 D 1 1005 1 SO4 SO4 . 
O 3 NAG A 1 201 220 NAG NAG . 
P 3 NAG A 1 202 221 NAG NAG . 
Q 4 EDO A 1 203 6 EDO EDO . 
R 5 SO4 A 1 204 6 SO4 SO4 . 
S 6 FUC B 1 801 801 FUC FUC . 
T 7 BGC B 1 802 901 BGC BGC . 
U 5 SO4 B 1 803 2 SO4 SO4 . 
V 8 HOH E 1 301 80 HOH HOH . 
V 8 HOH E 2 302 43 HOH HOH . 
V 8 HOH E 3 303 88 HOH HOH . 
W 8 HOH D 1 1101 60 HOH HOH . 
W 8 HOH D 2 1102 67 HOH HOH . 
X 8 HOH A 1 301 24 HOH HOH . 
X 8 HOH A 2 302 90 HOH HOH . 
X 8 HOH A 3 303 82 HOH HOH . 
X 8 HOH A 4 304 36 HOH HOH . 
Y 8 HOH B 1 901 4 HOH HOH . 
Y 8 HOH B 2 902 45 HOH HOH . 
Y 8 HOH B 3 903 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 27.965 -12.247 0.183 1 67.89 ? C1 NAG 201 E 1 
HETATM 2 C C2 NAG . . . E 3 28.26 -10.822 -0.338 1 76.31 ? C2 NAG 201 E 1 
HETATM 3 C C3 NAG . . . E 3 28.801 -10.867 -1.769 1 81.63 ? C3 NAG 201 E 1 
HETATM 4 C C4 NAG . . . E 3 29.963 -11.841 -1.892 1 68.37 ? C4 NAG 201 E 1 
HETATM 5 C C5 NAG . . . E 3 29.559 -13.21 -1.365 1 74.5 ? C5 NAG 201 E 1 
HETATM 6 C C6 NAG . . . E 3 30.704 -14.195 -1.365 1 88.89 ? C6 NAG 201 E 1 
HETATM 7 C C7 NAG . . . E 3 26.757 -9.17 0.736 1 57.7 ? C7 NAG 201 E 1 
HETATM 8 C C8 NAG . . . E 3 27.706 -9.157 1.897 1 45.6 ? C8 NAG 201 E 1 
HETATM 9 N N2 NAG . . . E 3 27.07 -9.984 -0.283 1 51.42 ? N2 NAG 201 E 1 
HETATM 10 O O3 NAG . . . E 3 29.23 -9.565 -2.154 1 68.74 ? O3 NAG 201 E 1 
HETATM 11 O O4 NAG . . . E 3 30.335 -11.967 -3.26 1 79.87 ? O4 NAG 201 E 1 
HETATM 12 O O5 NAG . . . E 3 29.12 -13.085 -0.006 1 86.29 ? O5 NAG 201 E 1 
HETATM 13 O O6 NAG . . . E 3 31.831 -13.679 -2.06 1 106.19 ? O6 NAG 201 E 1 
HETATM 14 O O7 NAG . . . E 3 25.742 -8.481 0.724 1 67.08 ? O7 NAG 201 E 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#