data_9D29
#
_model_server_result.job_id            btNoUx0Rb0NC8mBygHyUYg 
_model_server_result.datetime_utc      '2024-12-27 06:06:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9d29 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":705}' 
#
_entry.id    9D29 
#
_exptl.entry_id    9D29 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          134.25 
_cell.angle_gamma         90 
_cell.entry_id            9D29 
_cell.length_a            271.992 
_cell.length_b            88.416 
_cell.length_c            190.649 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9D29 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,EA 1 1 
B,J,K,L,M,N,O,P,Q,FA 2 1 
C,R,S,T,U,V,W,X,Y,GA 3 1 
D,Z,AA,BA,CA,DA,HA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 AA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     9D29 
_atom_sites.fract_transf_matrix[1][1]    0.003677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003582 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01131 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007323 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 701 651 SO4 SO4 . 
F 2 SO4 A 1 702 652 SO4 SO4 . 
G 3 GOL A 1 703 653 GOL LIG . 
H 3 GOL A 1 704 654 GOL LIG . 
I 2 SO4 A 1 705 5 SO4 SO4 . 
J 2 SO4 B 1 701 651 SO4 SO4 . 
K 3 GOL B 1 702 652 GOL LIG . 
L 3 GOL B 1 703 653 GOL LIG . 
M 3 GOL B 1 704 654 GOL LIG . 
N 2 SO4 B 1 705 3 SO4 SO4 . 
O 2 SO4 B 1 706 6 SO4 SO4 . 
P 2 SO4 B 1 707 8 SO4 SO4 . 
Q 2 SO4 B 1 708 12 SO4 SO4 . 
R 2 SO4 C 1 701 651 SO4 SO4 . 
S 2 SO4 C 1 702 652 SO4 SO4 . 
T 3 GOL C 1 703 653 GOL LIG . 
U 3 GOL C 1 704 654 GOL LIG . 
V 3 GOL C 1 705 655 GOL LIG . 
W 2 SO4 C 1 706 1 SO4 SO4 . 
X 2 SO4 C 1 707 4 SO4 SO4 . 
Y 2 SO4 C 1 708 9 SO4 SO4 . 
Z 2 SO4 D 1 701 651 SO4 SO4 . 
AA 3 GOL D 1 702 652 GOL LIG . 
BA 2 SO4 D 1 703 2 SO4 SO4 . 
CA 2 SO4 D 1 704 7 SO4 SO4 . 
DA 2 SO4 D 1 705 11 SO4 SO4 . 
EA 4 HOH A 1 801 18 HOH HOH . 
EA 4 HOH A 2 802 104 HOH HOH . 
EA 4 HOH A 3 803 108 HOH HOH . 
EA 4 HOH A 4 804 58 HOH HOH . 
EA 4 HOH A 5 805 125 HOH HOH . 
EA 4 HOH A 6 806 80 HOH HOH . 
EA 4 HOH A 7 807 3 HOH HOH . 
EA 4 HOH A 8 808 67 HOH HOH . 
EA 4 HOH A 9 809 60 HOH HOH . 
EA 4 HOH A 10 810 23 HOH HOH . 
EA 4 HOH A 11 811 55 HOH HOH . 
EA 4 HOH A 12 812 116 HOH HOH . 
EA 4 HOH A 13 813 2 HOH HOH . 
EA 4 HOH A 14 814 21 HOH HOH . 
EA 4 HOH A 15 815 88 HOH HOH . 
EA 4 HOH A 16 816 96 HOH HOH . 
EA 4 HOH A 17 817 41 HOH HOH . 
EA 4 HOH A 18 818 121 HOH HOH . 
EA 4 HOH A 19 819 115 HOH HOH . 
EA 4 HOH A 20 820 19 HOH HOH . 
EA 4 HOH A 21 821 118 HOH HOH . 
EA 4 HOH A 22 822 107 HOH HOH . 
EA 4 HOH A 23 823 26 HOH HOH . 
EA 4 HOH A 24 824 136 HOH HOH . 
FA 4 HOH B 1 801 68 HOH HOH . 
FA 4 HOH B 2 802 103 HOH HOH . 
FA 4 HOH B 3 803 24 HOH HOH . 
FA 4 HOH B 4 804 39 HOH HOH . 
FA 4 HOH B 5 805 79 HOH HOH . 
FA 4 HOH B 6 806 81 HOH HOH . 
FA 4 HOH B 7 807 111 HOH HOH . 
FA 4 HOH B 8 808 32 HOH HOH . 
FA 4 HOH B 9 809 4 HOH HOH . 
FA 4 HOH B 10 810 25 HOH HOH . 
FA 4 HOH B 11 811 65 HOH HOH . 
FA 4 HOH B 12 812 87 HOH HOH . 
FA 4 HOH B 13 813 62 HOH HOH . 
FA 4 HOH B 14 814 53 HOH HOH . 
FA 4 HOH B 15 815 64 HOH HOH . 
FA 4 HOH B 16 816 14 HOH HOH . 
FA 4 HOH B 17 817 28 HOH HOH . 
FA 4 HOH B 18 818 129 HOH HOH . 
GA 4 HOH C 1 801 86 HOH HOH . 
GA 4 HOH C 2 802 10 HOH HOH . 
GA 4 HOH C 3 803 101 HOH HOH . 
GA 4 HOH C 4 804 6 HOH HOH . 
GA 4 HOH C 5 805 17 HOH HOH . 
GA 4 HOH C 6 806 11 HOH HOH . 
GA 4 HOH C 7 807 76 HOH HOH . 
GA 4 HOH C 8 808 29 HOH HOH . 
GA 4 HOH C 9 809 59 HOH HOH . 
GA 4 HOH C 10 810 85 HOH HOH . 
GA 4 HOH C 11 811 22 HOH HOH . 
GA 4 HOH C 12 812 142 HOH HOH . 
GA 4 HOH C 13 813 90 HOH HOH . 
GA 4 HOH C 14 814 43 HOH HOH . 
GA 4 HOH C 15 815 15 HOH HOH . 
GA 4 HOH C 16 816 109 HOH HOH . 
GA 4 HOH C 17 817 36 HOH HOH . 
GA 4 HOH C 18 818 73 HOH HOH . 
GA 4 HOH C 19 819 42 HOH HOH . 
GA 4 HOH C 20 820 72 HOH HOH . 
GA 4 HOH C 21 821 63 HOH HOH . 
GA 4 HOH C 22 822 78 HOH HOH . 
GA 4 HOH C 23 823 27 HOH HOH . 
GA 4 HOH C 24 824 93 HOH HOH . 
GA 4 HOH C 25 825 45 HOH HOH . 
GA 4 HOH C 26 826 141 HOH HOH . 
GA 4 HOH C 27 827 105 HOH HOH . 
GA 4 HOH C 28 828 98 HOH HOH . 
HA 4 HOH D 1 801 139 HOH HOH . 
HA 4 HOH D 2 802 46 HOH HOH . 
HA 4 HOH D 3 803 13 HOH HOH . 
HA 4 HOH D 4 804 75 HOH HOH . 
HA 4 HOH D 5 805 12 HOH HOH . 
HA 4 HOH D 6 806 113 HOH HOH . 
HA 4 HOH D 7 807 52 HOH HOH . 
HA 4 HOH D 8 808 106 HOH HOH . 
HA 4 HOH D 9 809 54 HOH HOH . 
HA 4 HOH D 10 810 57 HOH HOH . 
HA 4 HOH D 11 811 69 HOH HOH . 
HA 4 HOH D 12 812 84 HOH HOH . 
HA 4 HOH D 13 813 99 HOH HOH . 
HA 4 HOH D 14 814 8 HOH HOH . 
HA 4 HOH D 15 815 74 HOH HOH . 
HA 4 HOH D 16 816 66 HOH HOH . 
HA 4 HOH D 17 817 100 HOH HOH . 
HA 4 HOH D 18 818 122 HOH HOH . 
HA 4 HOH D 19 819 82 HOH HOH . 
HA 4 HOH D 20 820 133 HOH HOH . 
HA 4 HOH D 21 821 51 HOH HOH . 
HA 4 HOH D 22 822 71 HOH HOH . 
HA 4 HOH D 23 823 44 HOH HOH . 
HA 4 HOH D 24 824 123 HOH HOH . 
HA 4 HOH D 25 825 95 HOH HOH . 
HA 4 HOH D 26 826 50 HOH HOH . 
HA 4 HOH D 27 827 119 HOH HOH . 
HA 4 HOH D 28 828 33 HOH HOH . 
HA 4 HOH D 29 829 124 HOH HOH . 
HA 4 HOH D 30 830 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . V 3 33.337 5.531 82.647 1 79.58 ? C1 GOL 705 C 1 
HETATM 2 O O1 GOL . . . V 3 33.491 4.14 82.652 1 76.66 ? O1 GOL 705 C 1 
HETATM 3 C C2 GOL . . . V 3 34.722 6.17 82.69 1 78.86 ? C2 GOL 705 C 1 
HETATM 4 O O2 GOL . . . V 3 34.74 7.091 83.744 1 81.19 ? O2 GOL 705 C 1 
HETATM 5 C C3 GOL . . . V 3 35.066 6.917 81.404 1 75.38 ? C3 GOL 705 C 1 
HETATM 6 O O3 GOL . . . V 3 35.873 6.085 80.618 1 68.08 ? O3 GOL 705 C 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#