data_9D2P # _model_server_result.job_id MI_zaPhevgh2QyEvQ2v6UA _model_server_result.datetime_utc '2025-08-23 21:14:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9D2P # _exptl.entry_id 9D2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.873 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(4-{2-[4-(6-chloropyridazin-3-yl)piperazin-1-yl]-2-oxoethyl}anilino)-2-oxoethyl acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9D2P _cell.length_a 97.927 _cell.length_b 97.927 _cell.length_c 69.061 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.020333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 403 1_555 F O1B ADP . A ADP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc2 D MG MG . A MG 403 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 D MG MG . A MG 403 1_555 G O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 D MG MG . A MG 403 1_555 G O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 D MG MG . A MG 403 1_555 G O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 D MG MG . A MG 403 1_555 G O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'C20 H22 Cl N5 O4' _chem_comp.formula_weight 431.873 _chem_comp.id MZI _chem_comp.mon_nstd_flag . _chem_comp.name '2-(4-{2-[4-(6-chloropyridazin-3-yl)piperazin-1-yl]-2-oxoethyl}anilino)-2-oxoethyl acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL01 C02 MZI sing 297 n n C02 C03 MZI doub 298 n y C02 N30 MZI sing 299 n y C03 C04 MZI sing 300 n y N30 N29 MZI doub 301 n y C04 C05 MZI doub 302 n y N29 C05 MZI sing 303 n y C05 N06 MZI sing 304 n n N06 C28 MZI sing 305 n n N06 C07 MZI sing 306 n n C28 C27 MZI sing 307 n n C07 C08 MZI sing 308 n n C27 N09 MZI sing 309 n n C08 N09 MZI sing 310 n n N09 C10 MZI sing 311 n n C10 C11 MZI sing 312 n n C10 O26 MZI doub 313 n n C11 C12 MZI sing 314 n n C25 C12 MZI doub 315 n y C25 C24 MZI sing 316 n y C12 C13 MZI sing 317 n y C24 C15 MZI doub 318 n y C13 C14 MZI doub 319 n y C15 C14 MZI sing 320 n y C15 N16 MZI sing 321 n n N16 C17 MZI sing 322 n n O23 C17 MZI doub 323 n n C17 C18 MZI sing 324 n n C18 O19 MZI sing 325 n n O19 C20 MZI sing 326 n n C20 C21 MZI sing 327 n n C20 O22 MZI doub 328 n n C13 H1 MZI sing 329 n n C21 H2 MZI sing 330 n n C21 H3 MZI sing 331 n n C21 H4 MZI sing 332 n n C24 H5 MZI sing 333 n n C28 H6 MZI sing 334 n n C28 H7 MZI sing 335 n n C03 H8 MZI sing 336 n n C04 H9 MZI sing 337 n n C07 H10 MZI sing 338 n n C07 H11 MZI sing 339 n n C08 H12 MZI sing 340 n n C08 H13 MZI sing 341 n n C11 H14 MZI sing 342 n n C11 H15 MZI sing 343 n n C14 H16 MZI sing 344 n n C18 H17 MZI sing 345 n n C18 H18 MZI sing 346 n n C25 H19 MZI sing 347 n n C27 H20 MZI sing 348 n n C27 H21 MZI sing 349 n n N16 H22 MZI sing 350 n n # _atom_sites.entry_id 9D2P _atom_sites.fract_transf_matrix[1][1] 0.010212 _atom_sites.fract_transf_matrix[1][2] 0.005896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MZI A 1 401 401 MZI LIG . C 3 ACY A 1 402 501 ACY ACT . D 4 MG A 1 403 1 MG MG . E 5 EDO A 1 404 1 EDO EDO . F 6 ADP A 1 405 1 ADP ADP . G 7 HOH A 1 501 204 HOH HOH . G 7 HOH A 2 502 4 HOH HOH . G 7 HOH A 3 503 98 HOH HOH . G 7 HOH A 4 504 228 HOH HOH . G 7 HOH A 5 505 54 HOH HOH . G 7 HOH A 6 506 227 HOH HOH . G 7 HOH A 7 507 221 HOH HOH . G 7 HOH A 8 508 195 HOH HOH . G 7 HOH A 9 509 230 HOH HOH . G 7 HOH A 10 510 210 HOH HOH . G 7 HOH A 11 511 55 HOH HOH . G 7 HOH A 12 512 57 HOH HOH . G 7 HOH A 13 513 72 HOH HOH . G 7 HOH A 14 514 20 HOH HOH . G 7 HOH A 15 515 84 HOH HOH . G 7 HOH A 16 516 198 HOH HOH . G 7 HOH A 17 517 237 HOH HOH . G 7 HOH A 18 518 63 HOH HOH . G 7 HOH A 19 519 62 HOH HOH . G 7 HOH A 20 520 15 HOH HOH . G 7 HOH A 21 521 220 HOH HOH . G 7 HOH A 22 522 59 HOH HOH . G 7 HOH A 23 523 26 HOH HOH . G 7 HOH A 24 524 50 HOH HOH . G 7 HOH A 25 525 34 HOH HOH . G 7 HOH A 26 526 203 HOH HOH . G 7 HOH A 27 527 190 HOH HOH . G 7 HOH A 28 528 162 HOH HOH . G 7 HOH A 29 529 196 HOH HOH . G 7 HOH A 30 530 214 HOH HOH . G 7 HOH A 31 531 232 HOH HOH . G 7 HOH A 32 532 212 HOH HOH . G 7 HOH A 33 533 209 HOH HOH . G 7 HOH A 34 534 11 HOH HOH . G 7 HOH A 35 535 5 HOH HOH . G 7 HOH A 36 536 216 HOH HOH . G 7 HOH A 37 537 22 HOH HOH . G 7 HOH A 38 538 218 HOH HOH . G 7 HOH A 39 539 200 HOH HOH . G 7 HOH A 40 540 78 HOH HOH . G 7 HOH A 41 541 74 HOH HOH . G 7 HOH A 42 542 179 HOH HOH . G 7 HOH A 43 543 236 HOH HOH . G 7 HOH A 44 544 242 HOH HOH . G 7 HOH A 45 545 10 HOH HOH . G 7 HOH A 46 546 36 HOH HOH . G 7 HOH A 47 547 240 HOH HOH . G 7 HOH A 48 548 205 HOH HOH . G 7 HOH A 49 549 226 HOH HOH . G 7 HOH A 50 550 48 HOH HOH . G 7 HOH A 51 551 56 HOH HOH . G 7 HOH A 52 552 241 HOH HOH . G 7 HOH A 53 553 6 HOH HOH . G 7 HOH A 54 554 207 HOH HOH . G 7 HOH A 55 555 161 HOH HOH . G 7 HOH A 56 556 177 HOH HOH . G 7 HOH A 57 557 222 HOH HOH . G 7 HOH A 58 558 7 HOH HOH . G 7 HOH A 59 559 186 HOH HOH . G 7 HOH A 60 560 118 HOH HOH . G 7 HOH A 61 561 18 HOH HOH . G 7 HOH A 62 562 66 HOH HOH . G 7 HOH A 63 563 206 HOH HOH . G 7 HOH A 64 564 27 HOH HOH . G 7 HOH A 65 565 97 HOH HOH . G 7 HOH A 66 566 192 HOH HOH . G 7 HOH A 67 567 40 HOH HOH . G 7 HOH A 68 568 2 HOH HOH . G 7 HOH A 69 569 88 HOH HOH . G 7 HOH A 70 570 183 HOH HOH . G 7 HOH A 71 571 238 HOH HOH . G 7 HOH A 72 572 51 HOH HOH . G 7 HOH A 73 573 193 HOH HOH . G 7 HOH A 74 574 23 HOH HOH . G 7 HOH A 75 575 33 HOH HOH . G 7 HOH A 76 576 32 HOH HOH . G 7 HOH A 77 577 149 HOH HOH . G 7 HOH A 78 578 82 HOH HOH . G 7 HOH A 79 579 119 HOH HOH . G 7 HOH A 80 580 92 HOH HOH . G 7 HOH A 81 581 194 HOH HOH . G 7 HOH A 82 582 47 HOH HOH . G 7 HOH A 83 583 17 HOH HOH . G 7 HOH A 84 584 37 HOH HOH . G 7 HOH A 85 585 185 HOH HOH . G 7 HOH A 86 586 135 HOH HOH . G 7 HOH A 87 587 60 HOH HOH . G 7 HOH A 88 588 29 HOH HOH . G 7 HOH A 89 589 201 HOH HOH . G 7 HOH A 90 590 71 HOH HOH . G 7 HOH A 91 591 213 HOH HOH . G 7 HOH A 92 592 35 HOH HOH . G 7 HOH A 93 593 219 HOH HOH . G 7 HOH A 94 594 223 HOH HOH . G 7 HOH A 95 595 38 HOH HOH . G 7 HOH A 96 596 211 HOH HOH . G 7 HOH A 97 597 189 HOH HOH . G 7 HOH A 98 598 124 HOH HOH . G 7 HOH A 99 599 8 HOH HOH . G 7 HOH A 100 600 235 HOH HOH . G 7 HOH A 101 601 197 HOH HOH . G 7 HOH A 102 602 79 HOH HOH . G 7 HOH A 103 603 202 HOH HOH . G 7 HOH A 104 604 231 HOH HOH . G 7 HOH A 105 605 229 HOH HOH . G 7 HOH A 106 606 208 HOH HOH . G 7 HOH A 107 607 16 HOH HOH . G 7 HOH A 108 608 170 HOH HOH . G 7 HOH A 109 609 215 HOH HOH . G 7 HOH A 110 610 182 HOH HOH . G 7 HOH A 111 611 61 HOH HOH . G 7 HOH A 112 612 122 HOH HOH . G 7 HOH A 113 613 234 HOH HOH . G 7 HOH A 114 614 53 HOH HOH . G 7 HOH A 115 615 19 HOH HOH . G 7 HOH A 116 616 239 HOH HOH . G 7 HOH A 117 617 21 HOH HOH . G 7 HOH A 118 618 58 HOH HOH . G 7 HOH A 119 619 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 MZI . . . B 2 -33.733 -11.112 -10.906 1 46.55 ? C10 MZI 401 A 1 HETATM 2 C C13 MZI . . . B 2 -32.235 -11.173 -7.922 1 31.06 ? C13 MZI 401 A 1 HETATM 3 C C15 MZI . . . B 2 -32.378 -13.272 -6.693 1 42.55 ? C15 MZI 401 A 1 HETATM 4 C C17 MZI . . . B 2 -33.719 -14.407 -4.823 1 48.05 ? C17 MZI 401 A 1 HETATM 5 C C20 MZI . . . B 2 -35.985 -14.651 -2.411 1 68.71 ? C20 MZI 401 A 1 HETATM 6 C C21 MZI . . . B 2 -37.498 -14.88 -2.503 1 64.57 ? C21 MZI 401 A 1 HETATM 7 C C24 MZI . . . B 2 -32.389 -13.992 -7.887 1 35.95 ? C24 MZI 401 A 1 HETATM 8 C C28 MZI . . . B 2 -35.549 -9.351 -13.432 1 46.07 ? C28 MZI 401 A 1 HETATM 9 C C02 MZI . . . B 2 -35.42 -6.969 -17.788 1 33.51 ? C02 MZI 401 A 1 HETATM 10 C C03 MZI . . . B 2 -34.075 -7.297 -17.649 1 33.84 ? C03 MZI 401 A 1 HETATM 11 C C04 MZI . . . B 2 -33.702 -7.985 -16.499 1 35.23 ? C04 MZI 401 A 1 HETATM 12 C C05 MZI . . . B 2 -34.745 -8.243 -15.598 1 37.52 ? C05 MZI 401 A 1 HETATM 13 C C07 MZI . . . B 2 -33.066 -9.157 -13.905 1 49.38 ? C07 MZI 401 A 1 HETATM 14 C C08 MZI . . . B 2 -32.903 -10.475 -13.168 1 54.88 ? C08 MZI 401 A 1 HETATM 15 C C11 MZI . . . B 2 -32.261 -11.178 -10.428 1 38.56 ? C11 MZI 401 A 1 HETATM 16 C C12 MZI . . . B 2 -32.263 -11.908 -9.108 1 34.04 ? C12 MZI 401 A 1 HETATM 17 C C14 MZI . . . B 2 -32.293 -11.877 -6.738 1 36.07 ? C14 MZI 401 A 1 HETATM 18 C C18 MZI . . . B 2 -33.81 -15.033 -3.424 1 56.69 ? C18 MZI 401 A 1 HETATM 19 C C25 MZI . . . B 2 -32.357 -13.294 -9.081 1 30.8 ? C25 MZI 401 A 1 HETATM 20 C C27 MZI . . . B 2 -35.282 -10.689 -12.768 1 39.77 ? C27 MZI 401 A 1 HETATM 21 N N06 MZI . . . B 2 -34.457 -8.973 -14.406 1 46.26 ? N06 MZI 401 A 1 HETATM 22 N N09 MZI . . . B 2 -33.966 -10.758 -12.277 1 49.04 ? N09 MZI 401 A 1 HETATM 23 N N16 MZI . . . B 2 -32.451 -13.917 -5.389 1 43.12 ? N16 MZI 401 A 1 HETATM 24 N N29 MZI . . . B 2 -35.972 -7.902 -15.808 1 33.6 ? N29 MZI 401 A 1 HETATM 25 N N30 MZI . . . B 2 -36.313 -7.257 -16.906 1 36.42 ? N30 MZI 401 A 1 HETATM 26 O O19 MZI . . . B 2 -35.133 -15.478 -3.181 1 63.14 ? O19 MZI 401 A 1 HETATM 27 O O22 MZI . . . B 2 -35.567 -13.8 -1.681 1 64.07 ? O22 MZI 401 A 1 HETATM 28 O O23 MZI . . . B 2 -34.737 -14.317 -5.428 1 48.21 ? O23 MZI 401 A 1 HETATM 29 O O26 MZI . . . B 2 -34.718 -11.355 -10.241 1 32.44 ? O26 MZI 401 A 1 HETATM 30 CL CL01 MZI . . . B 2 -36.038 -6.157 -19.198 1 37.56 ? CL01 MZI 401 A 1 # _model_server_stats.io_time_ms 118 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #