data_9D2P # _model_server_result.job_id q7s_DwPmr-TJfIdVfZL1cg _model_server_result.datetime_utc '2025-08-23 21:14:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 9D2P # _exptl.entry_id 9D2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9D2P _cell.length_a 97.927 _cell.length_b 97.927 _cell.length_c 69.061 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -23.020333 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 403 1_555 F O1B ADP . A ADP 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc2 D MG MG . A MG 403 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc3 D MG MG . A MG 403 1_555 G O HOH . A HOH 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 D MG MG . A MG 403 1_555 G O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc5 D MG MG . A MG 403 1_555 G O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 D MG MG . A MG 403 1_555 G O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 134 n n C1 C2 EDO sing 135 n n C1 H11 EDO sing 136 n n C1 H12 EDO sing 137 n n O1 HO1 EDO sing 138 n n C2 O2 EDO sing 139 n n C2 H21 EDO sing 140 n n C2 H22 EDO sing 141 n n O2 HO2 EDO sing 142 n n # _atom_sites.entry_id 9D2P _atom_sites.fract_transf_matrix[1][1] 0.010212 _atom_sites.fract_transf_matrix[1][2] 0.005896 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MZI A 1 401 401 MZI LIG . C 3 ACY A 1 402 501 ACY ACT . D 4 MG A 1 403 1 MG MG . E 5 EDO A 1 404 1 EDO EDO . F 6 ADP A 1 405 1 ADP ADP . G 7 HOH A 1 501 204 HOH HOH . G 7 HOH A 2 502 4 HOH HOH . G 7 HOH A 3 503 98 HOH HOH . G 7 HOH A 4 504 228 HOH HOH . G 7 HOH A 5 505 54 HOH HOH . G 7 HOH A 6 506 227 HOH HOH . G 7 HOH A 7 507 221 HOH HOH . G 7 HOH A 8 508 195 HOH HOH . G 7 HOH A 9 509 230 HOH HOH . G 7 HOH A 10 510 210 HOH HOH . G 7 HOH A 11 511 55 HOH HOH . G 7 HOH A 12 512 57 HOH HOH . G 7 HOH A 13 513 72 HOH HOH . G 7 HOH A 14 514 20 HOH HOH . G 7 HOH A 15 515 84 HOH HOH . G 7 HOH A 16 516 198 HOH HOH . G 7 HOH A 17 517 237 HOH HOH . G 7 HOH A 18 518 63 HOH HOH . G 7 HOH A 19 519 62 HOH HOH . G 7 HOH A 20 520 15 HOH HOH . G 7 HOH A 21 521 220 HOH HOH . G 7 HOH A 22 522 59 HOH HOH . G 7 HOH A 23 523 26 HOH HOH . G 7 HOH A 24 524 50 HOH HOH . G 7 HOH A 25 525 34 HOH HOH . G 7 HOH A 26 526 203 HOH HOH . G 7 HOH A 27 527 190 HOH HOH . G 7 HOH A 28 528 162 HOH HOH . G 7 HOH A 29 529 196 HOH HOH . G 7 HOH A 30 530 214 HOH HOH . G 7 HOH A 31 531 232 HOH HOH . G 7 HOH A 32 532 212 HOH HOH . G 7 HOH A 33 533 209 HOH HOH . G 7 HOH A 34 534 11 HOH HOH . G 7 HOH A 35 535 5 HOH HOH . G 7 HOH A 36 536 216 HOH HOH . G 7 HOH A 37 537 22 HOH HOH . G 7 HOH A 38 538 218 HOH HOH . G 7 HOH A 39 539 200 HOH HOH . G 7 HOH A 40 540 78 HOH HOH . G 7 HOH A 41 541 74 HOH HOH . G 7 HOH A 42 542 179 HOH HOH . G 7 HOH A 43 543 236 HOH HOH . G 7 HOH A 44 544 242 HOH HOH . G 7 HOH A 45 545 10 HOH HOH . G 7 HOH A 46 546 36 HOH HOH . G 7 HOH A 47 547 240 HOH HOH . G 7 HOH A 48 548 205 HOH HOH . G 7 HOH A 49 549 226 HOH HOH . G 7 HOH A 50 550 48 HOH HOH . G 7 HOH A 51 551 56 HOH HOH . G 7 HOH A 52 552 241 HOH HOH . G 7 HOH A 53 553 6 HOH HOH . G 7 HOH A 54 554 207 HOH HOH . G 7 HOH A 55 555 161 HOH HOH . G 7 HOH A 56 556 177 HOH HOH . G 7 HOH A 57 557 222 HOH HOH . G 7 HOH A 58 558 7 HOH HOH . G 7 HOH A 59 559 186 HOH HOH . G 7 HOH A 60 560 118 HOH HOH . G 7 HOH A 61 561 18 HOH HOH . G 7 HOH A 62 562 66 HOH HOH . G 7 HOH A 63 563 206 HOH HOH . G 7 HOH A 64 564 27 HOH HOH . G 7 HOH A 65 565 97 HOH HOH . G 7 HOH A 66 566 192 HOH HOH . G 7 HOH A 67 567 40 HOH HOH . G 7 HOH A 68 568 2 HOH HOH . G 7 HOH A 69 569 88 HOH HOH . G 7 HOH A 70 570 183 HOH HOH . G 7 HOH A 71 571 238 HOH HOH . G 7 HOH A 72 572 51 HOH HOH . G 7 HOH A 73 573 193 HOH HOH . G 7 HOH A 74 574 23 HOH HOH . G 7 HOH A 75 575 33 HOH HOH . G 7 HOH A 76 576 32 HOH HOH . G 7 HOH A 77 577 149 HOH HOH . G 7 HOH A 78 578 82 HOH HOH . G 7 HOH A 79 579 119 HOH HOH . G 7 HOH A 80 580 92 HOH HOH . G 7 HOH A 81 581 194 HOH HOH . G 7 HOH A 82 582 47 HOH HOH . G 7 HOH A 83 583 17 HOH HOH . G 7 HOH A 84 584 37 HOH HOH . G 7 HOH A 85 585 185 HOH HOH . G 7 HOH A 86 586 135 HOH HOH . G 7 HOH A 87 587 60 HOH HOH . G 7 HOH A 88 588 29 HOH HOH . G 7 HOH A 89 589 201 HOH HOH . G 7 HOH A 90 590 71 HOH HOH . G 7 HOH A 91 591 213 HOH HOH . G 7 HOH A 92 592 35 HOH HOH . G 7 HOH A 93 593 219 HOH HOH . G 7 HOH A 94 594 223 HOH HOH . G 7 HOH A 95 595 38 HOH HOH . G 7 HOH A 96 596 211 HOH HOH . G 7 HOH A 97 597 189 HOH HOH . G 7 HOH A 98 598 124 HOH HOH . G 7 HOH A 99 599 8 HOH HOH . G 7 HOH A 100 600 235 HOH HOH . G 7 HOH A 101 601 197 HOH HOH . G 7 HOH A 102 602 79 HOH HOH . G 7 HOH A 103 603 202 HOH HOH . G 7 HOH A 104 604 231 HOH HOH . G 7 HOH A 105 605 229 HOH HOH . G 7 HOH A 106 606 208 HOH HOH . G 7 HOH A 107 607 16 HOH HOH . G 7 HOH A 108 608 170 HOH HOH . G 7 HOH A 109 609 215 HOH HOH . G 7 HOH A 110 610 182 HOH HOH . G 7 HOH A 111 611 61 HOH HOH . G 7 HOH A 112 612 122 HOH HOH . G 7 HOH A 113 613 234 HOH HOH . G 7 HOH A 114 614 53 HOH HOH . G 7 HOH A 115 615 19 HOH HOH . G 7 HOH A 116 616 239 HOH HOH . G 7 HOH A 117 617 21 HOH HOH . G 7 HOH A 118 618 58 HOH HOH . G 7 HOH A 119 619 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 -18.093 -12.915 8.613 1 53.76 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . E 5 -17.503 -12.072 7.599 1 58.58 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . E 5 -19.452 -13.429 8.14 1 38.47 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . E 5 -20.359 -12.34 7.994 1 37.03 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 585 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #