data_9D2Q
#
_model_server_result.job_id            yTDVexXLmRrxYOUanXTR-g 
_model_server_result.datetime_utc      '2025-06-30 15:56:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9d2q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    9D2Q 
#
_exptl.entry_id    9D2Q 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9D2Q 
_cell.length_a            80.018 
_cell.length_b            93.099 
_cell.length_c            161.545 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9D2Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 1 2 
A,B,C,D,E,F,G 1 3 
A,B,C,D,E,F,G 1 4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 80 A PHE 61 1_555 A N LLP 81 A LLP 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 A C LLP 81 A LLP 62 1_555 A N LEU 82 A LEU 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 162 n n 
C1 C2 GOL sing 163 n n 
C1 H11 GOL sing 164 n n 
C1 H12 GOL sing 165 n n 
O1 HO1 GOL sing 166 n n 
C2 O2 GOL sing 167 n n 
C2 C3 GOL sing 168 n n 
C2 H2 GOL sing 169 n n 
O2 HO2 GOL sing 170 n n 
C3 O3 GOL sing 171 n n 
C3 H31 GOL sing 172 n n 
C3 H32 GOL sing 173 n n 
O3 HO3 GOL sing 174 n n 
#
_atom_sites.entry_id                     9D2Q 
_atom_sites.fract_transf_matrix[1][1]    0.012497 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010741 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00619 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 601 963 GOL GOL . 
C 2 GOL A 1 602 965 GOL GOL . 
D 3 PGE A 1 603 966 PGE PGE . 
E 4 EPE A 1 604 968 EPE EPE . 
F 2 GOL A 1 605 969 GOL GOL . 
G 5 HOH A 1 701 39 HOH HOH . 
G 5 HOH A 2 702 115 HOH HOH . 
G 5 HOH A 3 703 78 HOH HOH . 
G 5 HOH A 4 704 267 HOH HOH . 
G 5 HOH A 5 705 235 HOH HOH . 
G 5 HOH A 6 706 248 HOH HOH . 
G 5 HOH A 7 707 232 HOH HOH . 
G 5 HOH A 8 708 86 HOH HOH . 
G 5 HOH A 9 709 68 HOH HOH . 
G 5 HOH A 10 710 92 HOH HOH . 
G 5 HOH A 11 711 226 HOH HOH . 
G 5 HOH A 12 712 129 HOH HOH . 
G 5 HOH A 13 713 155 HOH HOH . 
G 5 HOH A 14 714 33 HOH HOH . 
G 5 HOH A 15 715 184 HOH HOH . 
G 5 HOH A 16 716 260 HOH HOH . 
G 5 HOH A 17 717 45 HOH HOH . 
G 5 HOH A 18 718 87 HOH HOH . 
G 5 HOH A 19 719 93 HOH HOH . 
G 5 HOH A 20 720 24 HOH HOH . 
G 5 HOH A 21 721 207 HOH HOH . 
G 5 HOH A 22 722 177 HOH HOH . 
G 5 HOH A 23 723 53 HOH HOH . 
G 5 HOH A 24 724 169 HOH HOH . 
G 5 HOH A 25 725 239 HOH HOH . 
G 5 HOH A 26 726 146 HOH HOH . 
G 5 HOH A 27 727 251 HOH HOH . 
G 5 HOH A 28 728 36 HOH HOH . 
G 5 HOH A 29 729 164 HOH HOH . 
G 5 HOH A 30 730 90 HOH HOH . 
G 5 HOH A 31 731 255 HOH HOH . 
G 5 HOH A 32 732 256 HOH HOH . 
G 5 HOH A 33 733 82 HOH HOH . 
G 5 HOH A 34 734 212 HOH HOH . 
G 5 HOH A 35 735 21 HOH HOH . 
G 5 HOH A 36 736 210 HOH HOH . 
G 5 HOH A 37 737 246 HOH HOH . 
G 5 HOH A 38 738 171 HOH HOH . 
G 5 HOH A 39 739 26 HOH HOH . 
G 5 HOH A 40 740 74 HOH HOH . 
G 5 HOH A 41 741 83 HOH HOH . 
G 5 HOH A 42 742 97 HOH HOH . 
G 5 HOH A 43 743 64 HOH HOH . 
G 5 HOH A 44 744 62 HOH HOH . 
G 5 HOH A 45 745 238 HOH HOH . 
G 5 HOH A 46 746 81 HOH HOH . 
G 5 HOH A 47 747 151 HOH HOH . 
G 5 HOH A 48 748 19 HOH HOH . 
G 5 HOH A 49 749 41 HOH HOH . 
G 5 HOH A 50 750 178 HOH HOH . 
G 5 HOH A 51 751 70 HOH HOH . 
G 5 HOH A 52 752 112 HOH HOH . 
G 5 HOH A 53 753 175 HOH HOH . 
G 5 HOH A 54 754 116 HOH HOH . 
G 5 HOH A 55 755 103 HOH HOH . 
G 5 HOH A 56 756 120 HOH HOH . 
G 5 HOH A 57 757 2 HOH HOH . 
G 5 HOH A 58 758 107 HOH HOH . 
G 5 HOH A 59 759 84 HOH HOH . 
G 5 HOH A 60 760 242 HOH HOH . 
G 5 HOH A 61 761 161 HOH HOH . 
G 5 HOH A 62 762 20 HOH HOH . 
G 5 HOH A 63 763 162 HOH HOH . 
G 5 HOH A 64 764 117 HOH HOH . 
G 5 HOH A 65 765 158 HOH HOH . 
G 5 HOH A 66 766 76 HOH HOH . 
G 5 HOH A 67 767 234 HOH HOH . 
G 5 HOH A 68 768 259 HOH HOH . 
G 5 HOH A 69 769 132 HOH HOH . 
G 5 HOH A 70 770 196 HOH HOH . 
G 5 HOH A 71 771 29 HOH HOH . 
G 5 HOH A 72 772 168 HOH HOH . 
G 5 HOH A 73 773 268 HOH HOH . 
G 5 HOH A 74 774 42 HOH HOH . 
G 5 HOH A 75 775 80 HOH HOH . 
G 5 HOH A 76 776 236 HOH HOH . 
G 5 HOH A 77 777 126 HOH HOH . 
G 5 HOH A 78 778 139 HOH HOH . 
G 5 HOH A 79 779 221 HOH HOH . 
G 5 HOH A 80 780 148 HOH HOH . 
G 5 HOH A 81 781 181 HOH HOH . 
G 5 HOH A 82 782 79 HOH HOH . 
G 5 HOH A 83 783 72 HOH HOH . 
G 5 HOH A 84 784 85 HOH HOH . 
G 5 HOH A 85 785 58 HOH HOH . 
G 5 HOH A 86 786 104 HOH HOH . 
G 5 HOH A 87 787 202 HOH HOH . 
G 5 HOH A 88 788 30 HOH HOH . 
G 5 HOH A 89 789 140 HOH HOH . 
G 5 HOH A 90 790 190 HOH HOH . 
G 5 HOH A 91 791 124 HOH HOH . 
G 5 HOH A 92 792 65 HOH HOH . 
G 5 HOH A 93 793 206 HOH HOH . 
G 5 HOH A 94 794 38 HOH HOH . 
G 5 HOH A 95 795 46 HOH HOH . 
G 5 HOH A 96 796 88 HOH HOH . 
G 5 HOH A 97 797 35 HOH HOH . 
G 5 HOH A 98 798 13 HOH HOH . 
G 5 HOH A 99 799 154 HOH HOH . 
G 5 HOH A 100 800 163 HOH HOH . 
G 5 HOH A 101 801 37 HOH HOH . 
G 5 HOH A 102 802 172 HOH HOH . 
G 5 HOH A 103 803 113 HOH HOH . 
G 5 HOH A 104 804 4 HOH HOH . 
G 5 HOH A 105 805 130 HOH HOH . 
G 5 HOH A 106 806 105 HOH HOH . 
G 5 HOH A 107 807 194 HOH HOH . 
G 5 HOH A 108 808 188 HOH HOH . 
G 5 HOH A 109 809 121 HOH HOH . 
G 5 HOH A 110 810 122 HOH HOH . 
G 5 HOH A 111 811 11 HOH HOH . 
G 5 HOH A 112 812 230 HOH HOH . 
G 5 HOH A 113 813 197 HOH HOH . 
G 5 HOH A 114 814 71 HOH HOH . 
G 5 HOH A 115 815 118 HOH HOH . 
G 5 HOH A 116 816 237 HOH HOH . 
G 5 HOH A 117 817 22 HOH HOH . 
G 5 HOH A 118 818 227 HOH HOH . 
G 5 HOH A 119 819 40 HOH HOH . 
G 5 HOH A 120 820 48 HOH HOH . 
G 5 HOH A 121 821 240 HOH HOH . 
G 5 HOH A 122 822 44 HOH HOH . 
G 5 HOH A 123 823 32 HOH HOH . 
G 5 HOH A 124 824 167 HOH HOH . 
G 5 HOH A 125 825 195 HOH HOH . 
G 5 HOH A 126 826 95 HOH HOH . 
G 5 HOH A 127 827 101 HOH HOH . 
G 5 HOH A 128 828 91 HOH HOH . 
G 5 HOH A 129 829 27 HOH HOH . 
G 5 HOH A 130 830 209 HOH HOH . 
G 5 HOH A 131 831 89 HOH HOH . 
G 5 HOH A 132 832 99 HOH HOH . 
G 5 HOH A 133 833 8 HOH HOH . 
G 5 HOH A 134 834 59 HOH HOH . 
G 5 HOH A 135 835 160 HOH HOH . 
G 5 HOH A 136 836 170 HOH HOH . 
G 5 HOH A 137 837 34 HOH HOH . 
G 5 HOH A 138 838 10 HOH HOH . 
G 5 HOH A 139 839 123 HOH HOH . 
G 5 HOH A 140 840 218 HOH HOH . 
G 5 HOH A 141 841 166 HOH HOH . 
G 5 HOH A 142 842 15 HOH HOH . 
G 5 HOH A 143 843 128 HOH HOH . 
G 5 HOH A 144 844 56 HOH HOH . 
G 5 HOH A 145 845 145 HOH HOH . 
G 5 HOH A 146 846 243 HOH HOH . 
G 5 HOH A 147 847 131 HOH HOH . 
G 5 HOH A 148 848 264 HOH HOH . 
G 5 HOH A 149 849 69 HOH HOH . 
G 5 HOH A 150 850 179 HOH HOH . 
G 5 HOH A 151 851 66 HOH HOH . 
G 5 HOH A 152 852 191 HOH HOH . 
G 5 HOH A 153 853 152 HOH HOH . 
G 5 HOH A 154 854 176 HOH HOH . 
G 5 HOH A 155 855 137 HOH HOH . 
G 5 HOH A 156 856 245 HOH HOH . 
G 5 HOH A 157 857 23 HOH HOH . 
G 5 HOH A 158 858 31 HOH HOH . 
G 5 HOH A 159 859 28 HOH HOH . 
G 5 HOH A 160 860 201 HOH HOH . 
G 5 HOH A 161 861 94 HOH HOH . 
G 5 HOH A 162 862 63 HOH HOH . 
G 5 HOH A 163 863 43 HOH HOH . 
G 5 HOH A 164 864 119 HOH HOH . 
G 5 HOH A 165 865 244 HOH HOH . 
G 5 HOH A 166 866 73 HOH HOH . 
G 5 HOH A 167 867 25 HOH HOH . 
G 5 HOH A 168 868 257 HOH HOH . 
G 5 HOH A 169 869 149 HOH HOH . 
G 5 HOH A 170 870 96 HOH HOH . 
G 5 HOH A 171 871 241 HOH HOH . 
G 5 HOH A 172 872 198 HOH HOH . 
G 5 HOH A 173 873 231 HOH HOH . 
G 5 HOH A 174 874 127 HOH HOH . 
G 5 HOH A 175 875 54 HOH HOH . 
G 5 HOH A 176 876 138 HOH HOH . 
G 5 HOH A 177 877 186 HOH HOH . 
G 5 HOH A 178 878 18 HOH HOH . 
G 5 HOH A 179 879 165 HOH HOH . 
G 5 HOH A 180 880 180 HOH HOH . 
G 5 HOH A 181 881 57 HOH HOH . 
G 5 HOH A 182 882 12 HOH HOH . 
G 5 HOH A 183 883 182 HOH HOH . 
G 5 HOH A 184 884 135 HOH HOH . 
G 5 HOH A 185 885 233 HOH HOH . 
G 5 HOH A 186 886 192 HOH HOH . 
G 5 HOH A 187 887 133 HOH HOH . 
G 5 HOH A 188 888 60 HOH HOH . 
G 5 HOH A 189 889 217 HOH HOH . 
G 5 HOH A 190 890 134 HOH HOH . 
G 5 HOH A 191 891 225 HOH HOH . 
G 5 HOH A 192 892 153 HOH HOH . 
G 5 HOH A 193 893 211 HOH HOH . 
G 5 HOH A 194 894 17 HOH HOH . 
G 5 HOH A 195 895 263 HOH HOH . 
G 5 HOH A 196 896 183 HOH HOH . 
G 5 HOH A 197 897 98 HOH HOH . 
G 5 HOH A 198 898 265 HOH HOH . 
G 5 HOH A 199 899 14 HOH HOH . 
G 5 HOH A 200 900 252 HOH HOH . 
G 5 HOH A 201 901 205 HOH HOH . 
G 5 HOH A 202 902 220 HOH HOH . 
G 5 HOH A 203 903 157 HOH HOH . 
G 5 HOH A 204 904 219 HOH HOH . 
G 5 HOH A 205 905 222 HOH HOH . 
G 5 HOH A 206 906 108 HOH HOH . 
G 5 HOH A 207 907 250 HOH HOH . 
G 5 HOH A 208 908 247 HOH HOH . 
G 5 HOH A 209 909 249 HOH HOH . 
G 5 HOH A 210 910 189 HOH HOH . 
G 5 HOH A 211 911 253 HOH HOH . 
G 5 HOH A 212 912 223 HOH HOH . 
G 5 HOH A 213 913 144 HOH HOH . 
G 5 HOH A 214 914 67 HOH HOH . 
G 5 HOH A 215 915 216 HOH HOH . 
G 5 HOH A 216 916 262 HOH HOH . 
G 5 HOH A 217 917 203 HOH HOH . 
G 5 HOH A 218 918 199 HOH HOH . 
G 5 HOH A 219 919 254 HOH HOH . 
G 5 HOH A 220 920 266 HOH HOH . 
G 5 HOH A 221 921 142 HOH HOH . 
G 5 HOH A 222 922 143 HOH HOH . 
G 5 HOH A 223 923 102 HOH HOH . 
G 5 HOH A 224 924 141 HOH HOH . 
G 5 HOH A 225 925 258 HOH HOH . 
G 5 HOH A 226 926 156 HOH HOH . 
G 5 HOH A 227 927 61 HOH HOH . 
G 5 HOH A 228 928 261 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 -32.429 -1.064 21.232 1 54.6 ? C1 GOL 602 A 1 
HETATM 2 O O1 GOL . . . C 2 -32.735 -1.937 22.268 1 54.6 ? O1 GOL 602 A 1 
HETATM 3 C C2 GOL . . . C 2 -33.766 -0.786 20.538 1 58.97 ? C2 GOL 602 A 1 
HETATM 4 O O2 GOL . . . C 2 -34.822 -1.239 21.301 1 64.89 ? O2 GOL 602 A 1 
HETATM 5 C C3 GOL . . . C 2 -33.801 0.734 20.354 1 47.87 ? C3 GOL 602 A 1 
HETATM 6 O O3 GOL . . . C 2 -34.925 1.027 19.576 1 50.3 ? O3 GOL 602 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#