data_9D2R # _model_server_result.job_id 61tojOfCxnHIsalqcFlrdA _model_server_result.datetime_utc '2025-08-21 19:18:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9D2R # _exptl.entry_id 9D2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9D2R _cell.length_a 99.357 _cell.length_b 99.357 _cell.length_c 50.061 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -16.687 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 9D2R _atom_sites.fract_transf_matrix[1][1] 0.010065 _atom_sites.fract_transf_matrix[1][2] 0.005811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ILE A 1 601 601 ILE ILE . C 3 GOL A 1 602 701 GOL GOL . D 3 GOL A 1 603 702 GOL GOL . E 3 GOL A 1 604 703 GOL GOL . F 3 GOL A 1 605 704 GOL GOL . G 3 GOL A 1 606 706 GOL GOL . H 4 ACT A 1 607 707 ACT ACT . I 5 HOH A 1 701 29 HOH HOH . I 5 HOH A 2 702 267 HOH HOH . I 5 HOH A 3 703 157 HOH HOH . I 5 HOH A 4 704 146 HOH HOH . I 5 HOH A 5 705 272 HOH HOH . I 5 HOH A 6 706 28 HOH HOH . I 5 HOH A 7 707 111 HOH HOH . I 5 HOH A 8 708 90 HOH HOH . I 5 HOH A 9 709 79 HOH HOH . I 5 HOH A 10 710 47 HOH HOH . I 5 HOH A 11 711 104 HOH HOH . I 5 HOH A 12 712 277 HOH HOH . I 5 HOH A 13 713 21 HOH HOH . I 5 HOH A 14 714 82 HOH HOH . I 5 HOH A 15 715 147 HOH HOH . I 5 HOH A 16 716 14 HOH HOH . I 5 HOH A 17 717 60 HOH HOH . I 5 HOH A 18 718 23 HOH HOH . I 5 HOH A 19 719 39 HOH HOH . I 5 HOH A 20 720 38 HOH HOH . I 5 HOH A 21 721 278 HOH HOH . I 5 HOH A 22 722 155 HOH HOH . I 5 HOH A 23 723 50 HOH HOH . I 5 HOH A 24 724 37 HOH HOH . I 5 HOH A 25 725 22 HOH HOH . I 5 HOH A 26 726 83 HOH HOH . I 5 HOH A 27 727 13 HOH HOH . I 5 HOH A 28 728 94 HOH HOH . I 5 HOH A 29 729 250 HOH HOH . I 5 HOH A 30 730 141 HOH HOH . I 5 HOH A 31 731 33 HOH HOH . I 5 HOH A 32 732 3 HOH HOH . I 5 HOH A 33 733 199 HOH HOH . I 5 HOH A 34 734 127 HOH HOH . I 5 HOH A 35 735 56 HOH HOH . I 5 HOH A 36 736 154 HOH HOH . I 5 HOH A 37 737 19 HOH HOH . I 5 HOH A 38 738 196 HOH HOH . I 5 HOH A 39 739 116 HOH HOH . I 5 HOH A 40 740 66 HOH HOH . I 5 HOH A 41 741 9 HOH HOH . I 5 HOH A 42 742 40 HOH HOH . I 5 HOH A 43 743 88 HOH HOH . I 5 HOH A 44 744 45 HOH HOH . I 5 HOH A 45 745 55 HOH HOH . I 5 HOH A 46 746 24 HOH HOH . I 5 HOH A 47 747 43 HOH HOH . I 5 HOH A 48 748 57 HOH HOH . I 5 HOH A 49 749 4 HOH HOH . I 5 HOH A 50 750 150 HOH HOH . I 5 HOH A 51 751 140 HOH HOH . I 5 HOH A 52 752 17 HOH HOH . I 5 HOH A 53 753 143 HOH HOH . I 5 HOH A 54 754 8 HOH HOH . I 5 HOH A 55 755 35 HOH HOH . I 5 HOH A 56 756 130 HOH HOH . I 5 HOH A 57 757 32 HOH HOH . I 5 HOH A 58 758 36 HOH HOH . I 5 HOH A 59 759 30 HOH HOH . I 5 HOH A 60 760 70 HOH HOH . I 5 HOH A 61 761 144 HOH HOH . I 5 HOH A 62 762 2 HOH HOH . I 5 HOH A 63 763 72 HOH HOH . I 5 HOH A 64 764 20 HOH HOH . I 5 HOH A 65 765 10 HOH HOH . I 5 HOH A 66 766 107 HOH HOH . I 5 HOH A 67 767 132 HOH HOH . I 5 HOH A 68 768 16 HOH HOH . I 5 HOH A 69 769 12 HOH HOH . I 5 HOH A 70 770 75 HOH HOH . I 5 HOH A 71 771 247 HOH HOH . I 5 HOH A 72 772 53 HOH HOH . I 5 HOH A 73 773 31 HOH HOH . I 5 HOH A 74 774 5 HOH HOH . I 5 HOH A 75 775 76 HOH HOH . I 5 HOH A 76 776 156 HOH HOH . I 5 HOH A 77 777 151 HOH HOH . I 5 HOH A 78 778 158 HOH HOH . I 5 HOH A 79 779 101 HOH HOH . I 5 HOH A 80 780 49 HOH HOH . I 5 HOH A 81 781 54 HOH HOH . I 5 HOH A 82 782 6 HOH HOH . I 5 HOH A 83 783 261 HOH HOH . I 5 HOH A 84 784 102 HOH HOH . I 5 HOH A 85 785 58 HOH HOH . I 5 HOH A 86 786 148 HOH HOH . I 5 HOH A 87 787 279 HOH HOH . I 5 HOH A 88 788 51 HOH HOH . I 5 HOH A 89 789 11 HOH HOH . I 5 HOH A 90 790 7 HOH HOH . I 5 HOH A 91 791 34 HOH HOH . I 5 HOH A 92 792 68 HOH HOH . I 5 HOH A 93 793 1 HOH HOH . I 5 HOH A 94 794 62 HOH HOH . I 5 HOH A 95 795 137 HOH HOH . I 5 HOH A 96 796 91 HOH HOH . I 5 HOH A 97 797 26 HOH HOH . I 5 HOH A 98 798 160 HOH HOH . I 5 HOH A 99 799 149 HOH HOH . I 5 HOH A 100 800 97 HOH HOH . I 5 HOH A 101 801 112 HOH HOH . I 5 HOH A 102 802 15 HOH HOH . I 5 HOH A 103 803 251 HOH HOH . I 5 HOH A 104 804 59 HOH HOH . I 5 HOH A 105 805 123 HOH HOH . I 5 HOH A 106 806 236 HOH HOH . I 5 HOH A 107 807 263 HOH HOH . I 5 HOH A 108 808 25 HOH HOH . I 5 HOH A 109 809 186 HOH HOH . I 5 HOH A 110 810 142 HOH HOH . I 5 HOH A 111 811 48 HOH HOH . I 5 HOH A 112 812 159 HOH HOH . I 5 HOH A 113 813 69 HOH HOH . I 5 HOH A 114 814 65 HOH HOH . I 5 HOH A 115 815 52 HOH HOH . I 5 HOH A 116 816 179 HOH HOH . I 5 HOH A 117 817 208 HOH HOH . I 5 HOH A 118 818 27 HOH HOH . I 5 HOH A 119 819 133 HOH HOH . I 5 HOH A 120 820 44 HOH HOH . I 5 HOH A 121 821 183 HOH HOH . I 5 HOH A 122 822 167 HOH HOH . I 5 HOH A 123 823 252 HOH HOH . I 5 HOH A 124 824 205 HOH HOH . I 5 HOH A 125 825 145 HOH HOH . I 5 HOH A 126 826 119 HOH HOH . I 5 HOH A 127 827 228 HOH HOH . I 5 HOH A 128 828 231 HOH HOH . I 5 HOH A 129 829 121 HOH HOH . I 5 HOH A 130 830 153 HOH HOH . I 5 HOH A 131 831 103 HOH HOH . I 5 HOH A 132 832 168 HOH HOH . I 5 HOH A 133 833 64 HOH HOH . I 5 HOH A 134 834 122 HOH HOH . I 5 HOH A 135 835 138 HOH HOH . I 5 HOH A 136 836 254 HOH HOH . I 5 HOH A 137 837 92 HOH HOH . I 5 HOH A 138 838 71 HOH HOH . I 5 HOH A 139 839 80 HOH HOH . I 5 HOH A 140 840 115 HOH HOH . I 5 HOH A 141 841 126 HOH HOH . I 5 HOH A 142 842 268 HOH HOH . I 5 HOH A 143 843 106 HOH HOH . I 5 HOH A 144 844 177 HOH HOH . I 5 HOH A 145 845 73 HOH HOH . I 5 HOH A 146 846 110 HOH HOH . I 5 HOH A 147 847 96 HOH HOH . I 5 HOH A 148 848 189 HOH HOH . I 5 HOH A 149 849 266 HOH HOH . I 5 HOH A 150 850 184 HOH HOH . I 5 HOH A 151 851 67 HOH HOH . I 5 HOH A 152 852 128 HOH HOH . I 5 HOH A 153 853 210 HOH HOH . I 5 HOH A 154 854 211 HOH HOH . I 5 HOH A 155 855 63 HOH HOH . I 5 HOH A 156 856 185 HOH HOH . I 5 HOH A 157 857 229 HOH HOH . I 5 HOH A 158 858 105 HOH HOH . I 5 HOH A 159 859 74 HOH HOH . I 5 HOH A 160 860 114 HOH HOH . I 5 HOH A 161 861 152 HOH HOH . I 5 HOH A 162 862 42 HOH HOH . I 5 HOH A 163 863 86 HOH HOH . I 5 HOH A 164 864 226 HOH HOH . I 5 HOH A 165 865 131 HOH HOH . I 5 HOH A 166 866 238 HOH HOH . I 5 HOH A 167 867 198 HOH HOH . I 5 HOH A 168 868 87 HOH HOH . I 5 HOH A 169 869 46 HOH HOH . I 5 HOH A 170 870 213 HOH HOH . I 5 HOH A 171 871 182 HOH HOH . I 5 HOH A 172 872 108 HOH HOH . I 5 HOH A 173 873 173 HOH HOH . I 5 HOH A 174 874 217 HOH HOH . I 5 HOH A 175 875 222 HOH HOH . I 5 HOH A 176 876 18 HOH HOH . I 5 HOH A 177 877 120 HOH HOH . I 5 HOH A 178 878 218 HOH HOH . I 5 HOH A 179 879 135 HOH HOH . I 5 HOH A 180 880 125 HOH HOH . I 5 HOH A 181 881 212 HOH HOH . I 5 HOH A 182 882 41 HOH HOH . I 5 HOH A 183 883 269 HOH HOH . I 5 HOH A 184 884 89 HOH HOH . I 5 HOH A 185 885 61 HOH HOH . I 5 HOH A 186 886 270 HOH HOH . I 5 HOH A 187 887 255 HOH HOH . I 5 HOH A 188 888 77 HOH HOH . I 5 HOH A 189 889 264 HOH HOH . I 5 HOH A 190 890 100 HOH HOH . I 5 HOH A 191 891 117 HOH HOH . I 5 HOH A 192 892 271 HOH HOH . I 5 HOH A 193 893 124 HOH HOH . I 5 HOH A 194 894 181 HOH HOH . I 5 HOH A 195 895 93 HOH HOH . I 5 HOH A 196 896 118 HOH HOH . I 5 HOH A 197 897 84 HOH HOH . I 5 HOH A 198 898 161 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -39.626 29.486 -3.752 1 28.69 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . C 3 -39.805 30.248 -4.841 1 36.44 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . C 3 -38.144 29.023 -4.004 1 38.37 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . C 3 -37.467 28.651 -2.851 1 31.54 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . C 3 -38.258 27.852 -4.976 1 33.59 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . C 3 -36.945 27.314 -5.035 1 37.74 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #