data_9D2S # _model_server_result.job_id Kft3eDgOeaRDjrv7ELyphw _model_server_result.datetime_utc '2025-08-01 06:27:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9D2S # _exptl.entry_id 9D2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.016 _cell.angle_gamma 90 _cell.entry_id 9D2S _cell.length_a 106.376 _cell.length_b 39.132 _cell.length_c 56.631 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 9D2S _atom_sites.fract_transf_matrix[1][1] 0.009401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004793 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ILE A 1 601 601 ILE ILE . C 3 GOL A 1 602 701 GOL GOL . D 4 HOH A 1 701 83 HOH HOH . D 4 HOH A 2 702 167 HOH HOH . D 4 HOH A 3 703 91 HOH HOH . D 4 HOH A 4 704 60 HOH HOH . D 4 HOH A 5 705 18 HOH HOH . D 4 HOH A 6 706 112 HOH HOH . D 4 HOH A 7 707 81 HOH HOH . D 4 HOH A 8 708 50 HOH HOH . D 4 HOH A 9 709 109 HOH HOH . D 4 HOH A 10 710 76 HOH HOH . D 4 HOH A 11 711 43 HOH HOH . D 4 HOH A 12 712 150 HOH HOH . D 4 HOH A 13 713 132 HOH HOH . D 4 HOH A 14 714 7 HOH HOH . D 4 HOH A 15 715 139 HOH HOH . D 4 HOH A 16 716 70 HOH HOH . D 4 HOH A 17 717 47 HOH HOH . D 4 HOH A 18 718 3 HOH HOH . D 4 HOH A 19 719 128 HOH HOH . D 4 HOH A 20 720 53 HOH HOH . D 4 HOH A 21 721 12 HOH HOH . D 4 HOH A 22 722 90 HOH HOH . D 4 HOH A 23 723 51 HOH HOH . D 4 HOH A 24 724 120 HOH HOH . D 4 HOH A 25 725 82 HOH HOH . D 4 HOH A 26 726 66 HOH HOH . D 4 HOH A 27 727 41 HOH HOH . D 4 HOH A 28 728 152 HOH HOH . D 4 HOH A 29 729 56 HOH HOH . D 4 HOH A 30 730 52 HOH HOH . D 4 HOH A 31 731 33 HOH HOH . D 4 HOH A 32 732 23 HOH HOH . D 4 HOH A 33 733 65 HOH HOH . D 4 HOH A 34 734 168 HOH HOH . D 4 HOH A 35 735 17 HOH HOH . D 4 HOH A 36 736 75 HOH HOH . D 4 HOH A 37 737 58 HOH HOH . D 4 HOH A 38 738 149 HOH HOH . D 4 HOH A 39 739 9 HOH HOH . D 4 HOH A 40 740 13 HOH HOH . D 4 HOH A 41 741 85 HOH HOH . D 4 HOH A 42 742 57 HOH HOH . D 4 HOH A 43 743 40 HOH HOH . D 4 HOH A 44 744 162 HOH HOH . D 4 HOH A 45 745 63 HOH HOH . D 4 HOH A 46 746 129 HOH HOH . D 4 HOH A 47 747 55 HOH HOH . D 4 HOH A 48 748 28 HOH HOH . D 4 HOH A 49 749 34 HOH HOH . D 4 HOH A 50 750 138 HOH HOH . D 4 HOH A 51 751 1 HOH HOH . D 4 HOH A 52 752 124 HOH HOH . D 4 HOH A 53 753 172 HOH HOH . D 4 HOH A 54 754 5 HOH HOH . D 4 HOH A 55 755 77 HOH HOH . D 4 HOH A 56 756 15 HOH HOH . D 4 HOH A 57 757 14 HOH HOH . D 4 HOH A 58 758 30 HOH HOH . D 4 HOH A 59 759 25 HOH HOH . D 4 HOH A 60 760 64 HOH HOH . D 4 HOH A 61 761 10 HOH HOH . D 4 HOH A 62 762 32 HOH HOH . D 4 HOH A 63 763 102 HOH HOH . D 4 HOH A 64 764 24 HOH HOH . D 4 HOH A 65 765 39 HOH HOH . D 4 HOH A 66 766 79 HOH HOH . D 4 HOH A 67 767 48 HOH HOH . D 4 HOH A 68 768 67 HOH HOH . D 4 HOH A 69 769 16 HOH HOH . D 4 HOH A 70 770 166 HOH HOH . D 4 HOH A 71 771 29 HOH HOH . D 4 HOH A 72 772 22 HOH HOH . D 4 HOH A 73 773 68 HOH HOH . D 4 HOH A 74 774 31 HOH HOH . D 4 HOH A 75 775 44 HOH HOH . D 4 HOH A 76 776 126 HOH HOH . D 4 HOH A 77 777 69 HOH HOH . D 4 HOH A 78 778 165 HOH HOH . D 4 HOH A 79 779 163 HOH HOH . D 4 HOH A 80 780 94 HOH HOH . D 4 HOH A 81 781 36 HOH HOH . D 4 HOH A 82 782 46 HOH HOH . D 4 HOH A 83 783 131 HOH HOH . D 4 HOH A 84 784 35 HOH HOH . D 4 HOH A 85 785 20 HOH HOH . D 4 HOH A 86 786 101 HOH HOH . D 4 HOH A 87 787 21 HOH HOH . D 4 HOH A 88 788 2 HOH HOH . D 4 HOH A 89 789 92 HOH HOH . D 4 HOH A 90 790 97 HOH HOH . D 4 HOH A 91 791 151 HOH HOH . D 4 HOH A 92 792 107 HOH HOH . D 4 HOH A 93 793 100 HOH HOH . D 4 HOH A 94 794 11 HOH HOH . D 4 HOH A 95 795 71 HOH HOH . D 4 HOH A 96 796 144 HOH HOH . D 4 HOH A 97 797 26 HOH HOH . D 4 HOH A 98 798 140 HOH HOH . D 4 HOH A 99 799 19 HOH HOH . D 4 HOH A 100 800 121 HOH HOH . D 4 HOH A 101 801 59 HOH HOH . D 4 HOH A 102 802 54 HOH HOH . D 4 HOH A 103 803 37 HOH HOH . D 4 HOH A 104 804 6 HOH HOH . D 4 HOH A 105 805 80 HOH HOH . D 4 HOH A 106 806 164 HOH HOH . D 4 HOH A 107 807 158 HOH HOH . D 4 HOH A 108 808 155 HOH HOH . D 4 HOH A 109 809 147 HOH HOH . D 4 HOH A 110 810 173 HOH HOH . D 4 HOH A 111 811 49 HOH HOH . D 4 HOH A 112 812 72 HOH HOH . D 4 HOH A 113 813 38 HOH HOH . D 4 HOH A 114 814 135 HOH HOH . D 4 HOH A 115 815 61 HOH HOH . D 4 HOH A 116 816 8 HOH HOH . D 4 HOH A 117 817 154 HOH HOH . D 4 HOH A 118 818 104 HOH HOH . D 4 HOH A 119 819 115 HOH HOH . D 4 HOH A 120 820 27 HOH HOH . D 4 HOH A 121 821 123 HOH HOH . D 4 HOH A 122 822 174 HOH HOH . D 4 HOH A 123 823 95 HOH HOH . D 4 HOH A 124 824 157 HOH HOH . D 4 HOH A 125 825 105 HOH HOH . D 4 HOH A 126 826 171 HOH HOH . D 4 HOH A 127 827 108 HOH HOH . D 4 HOH A 128 828 145 HOH HOH . D 4 HOH A 129 829 136 HOH HOH . D 4 HOH A 130 830 45 HOH HOH . D 4 HOH A 131 831 93 HOH HOH . D 4 HOH A 132 832 111 HOH HOH . D 4 HOH A 133 833 146 HOH HOH . D 4 HOH A 134 834 160 HOH HOH . D 4 HOH A 135 835 78 HOH HOH . D 4 HOH A 136 836 74 HOH HOH . D 4 HOH A 137 837 99 HOH HOH . D 4 HOH A 138 838 122 HOH HOH . D 4 HOH A 139 839 86 HOH HOH . D 4 HOH A 140 840 116 HOH HOH . D 4 HOH A 141 841 127 HOH HOH . D 4 HOH A 142 842 89 HOH HOH . D 4 HOH A 143 843 161 HOH HOH . D 4 HOH A 144 844 133 HOH HOH . D 4 HOH A 145 845 141 HOH HOH . D 4 HOH A 146 846 117 HOH HOH . D 4 HOH A 147 847 142 HOH HOH . D 4 HOH A 148 848 106 HOH HOH . D 4 HOH A 149 849 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -4.73 19.422 0.537 1 28.13 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . C 3 -5.314 18.509 -0.373 1 28.6 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . C 3 -5.65 19.608 1.768 1 26.36 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . C 3 -6.806 20.273 1.427 1 32.04 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . C 3 -5.98 18.205 2.288 1 21.41 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . C 3 -6.799 18.256 3.419 1 16.03 ? O3 GOL 602 A 1 HETATM 7 H H11 GOL . . . C 3 -4.581 20.291 0.132 1 33.79 ? H11 GOL 602 A 1 HETATM 8 H H12 GOL . . . C 3 -3.862 19.12 0.846 1 33.79 ? H12 GOL 602 A 1 HETATM 9 H HO1 GOL . . . C 3 -4.768 18.428 -1.019 1 34.36 ? HO1 GOL 602 A 1 HETATM 10 H H2 GOL . . . C 3 -5.182 20.127 2.442 1 31.67 ? H2 GOL 602 A 1 HETATM 11 H HO2 GOL . . . C 3 -7.165 20.556 2.144 1 38.48 ? HO2 GOL 602 A 1 HETATM 12 H H31 GOL . . . C 3 -5.138 17.755 2.462 1 25.73 ? H31 GOL 602 A 1 HETATM 13 H H32 GOL . . . C 3 -6.387 17.713 1.558 1 25.73 ? H32 GOL 602 A 1 HETATM 14 H HO3 GOL . . . C 3 -6.819 19.068 3.669 1 19.27 ? HO3 GOL 602 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #