data_9D3E # _model_server_result.job_id 1NkPIK297n0t3YQxMU0ZZQ _model_server_result.datetime_utc '2025-01-22 00:29:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9d3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 9D3E # _exptl.entry_id 9D3E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 408.414 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{[(2R)-4-(bicyclo[1.1.1]pentan-1-yl)-5-oxomorpholin-2-yl]methyl}-1-[4-(trifluoromethyl)phenyl]cyclopropane-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9D3E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9D3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 139 A CYS 118 1_555 A SG CYS 218 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 44 H CYS 25 1_555 B SG CYS 118 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 173 H CYS 154 1_555 B SG CYS 229 H CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 C SG CYS 42 K CYS 22 1_555 C SG CYS 116 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 D SG CYS 43 L CYS 24 1_555 D SG CYS 108 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 D SG CYS 155 L CYS 136 1_555 D SG CYS 215 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C21 H23 F3 N2 O3' _chem_comp.formula_weight 408.414 _chem_comp.id A1A1W _chem_comp.mon_nstd_flag . _chem_comp.name N-{[(2R)-4-(bicyclo[1.1.1]pentan-1-yl)-5-oxomorpholin-2-yl]methyl}-1-[4-(trifluoromethyl)phenyl]cyclopropane-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C17 A1A1W doub 1 n n C19 C17 A1A1W sing 2 n n C19 O20 A1A1W sing 3 n n C17 N16 A1A1W sing 4 n n C22 C21 A1A1W sing 5 n n C22 C23 A1A1W sing 6 n n O20 C14 A1A1W sing 7 n n N16 C21 A1A1W sing 8 n n N16 C15 A1A1W sing 9 n n C24 C21 A1A1W sing 10 n n C24 C23 A1A1W sing 11 n n C21 C25 A1A1W sing 12 n n C23 C25 A1A1W sing 13 n n C15 C14 A1A1W sing 14 n n C14 C13 A1A1W sing 15 n n C13 N12 A1A1W sing 16 n n N12 C10 A1A1W sing 17 n n O11 C10 A1A1W doub 18 n n C10 C7 A1A1W sing 19 n n C5 C4 A1A1W doub 20 n y C5 C6 A1A1W sing 21 n y C7 C6 A1A1W sing 22 n n C7 C9 A1A1W sing 23 n n C7 C8 A1A1W sing 24 n n C4 C3 A1A1W sing 25 n y C6 C1 A1A1W doub 26 n y C9 C8 A1A1W sing 27 n n F28 C26 A1A1W sing 28 n n C3 C26 A1A1W sing 29 n n C3 C2 A1A1W doub 30 n y C1 C2 A1A1W sing 31 n y C26 F29 A1A1W sing 32 n n C26 F27 A1A1W sing 33 n n C1 H1 A1A1W sing 34 n n C13 H2 A1A1W sing 35 n n C13 H3 A1A1W sing 36 n n C14 H4 A1A1W sing 37 n n C15 H5 A1A1W sing 38 n n C15 H6 A1A1W sing 39 n n C19 H7 A1A1W sing 40 n n C19 H8 A1A1W sing 41 n n C2 H9 A1A1W sing 42 n n C22 H10 A1A1W sing 43 n n C22 H11 A1A1W sing 44 n n C23 H12 A1A1W sing 45 n n C24 H13 A1A1W sing 46 n n C24 H14 A1A1W sing 47 n n C25 H15 A1A1W sing 48 n n C25 H16 A1A1W sing 49 n n C4 H17 A1A1W sing 50 n n C5 H18 A1A1W sing 51 n n C8 H19 A1A1W sing 52 n n C8 H20 A1A1W sing 53 n n C9 H21 A1A1W sing 54 n n C9 H22 A1A1W sing 55 n n N12 H23 A1A1W sing 56 n n # _atom_sites.entry_id 9D3E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 CLR A 1 501 501 CLR CLR . F 6 EBX A 1 502 501 EBX PFE . G 7 A1A1W A 1 503 502 A1A1W PFF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1A1W . . . G 7 171.483 162.707 158.703 1 121.81 ? C1 A1A1W 503 A 1 HETATM 2 C C10 A1A1W . . . G 7 173.927 162.778 156.117 1 122.55 ? C10 A1A1W 503 A 1 HETATM 3 C C13 A1A1W . . . G 7 173.021 163.646 154.019 1 119.26 ? C13 A1A1W 503 A 1 HETATM 4 C C14 A1A1W . . . G 7 172.569 162.676 152.959 1 119.65 ? C14 A1A1W 503 A 1 HETATM 5 C C15 A1A1W . . . G 7 173.465 161.457 152.877 1 120.82 ? C15 A1A1W 503 A 1 HETATM 6 C C17 A1A1W . . . G 7 172.418 161.062 150.702 1 121.75 ? C17 A1A1W 503 A 1 HETATM 7 C C19 A1A1W . . . G 7 171.916 162.483 150.697 1 120.47 ? C19 A1A1W 503 A 1 HETATM 8 C C2 A1A1W . . . G 7 170.166 162.457 159.043 1 121.96 ? C2 A1A1W 503 A 1 HETATM 9 C C21 A1A1W . . . G 7 172.978 159.126 152.121 1 122.3 ? C21 A1A1W 503 A 1 HETATM 10 C C22 A1A1W . . . G 7 173.894 158.07 151.441 1 122.79 ? C22 A1A1W 503 A 1 HETATM 11 C C23 A1A1W . . . G 7 173.05 157.289 152.478 1 123.6 ? C23 A1A1W 503 A 1 HETATM 12 C C24 A1A1W . . . G 7 171.822 158.096 151.989 1 121.51 ? C24 A1A1W 503 A 1 HETATM 13 C C25 A1A1W . . . G 7 173.327 158.442 153.473 1 122.04 ? C25 A1A1W 503 A 1 HETATM 14 C C26 A1A1W . . . G 7 168.062 161.101 158.878 1 123.08 ? C26 A1A1W 503 A 1 HETATM 15 C C3 A1A1W . . . G 7 169.48 161.384 158.49 1 121.91 ? C3 A1A1W 503 A 1 HETATM 16 C C4 A1A1W . . . G 7 170.149 160.57 157.585 1 121.3 ? C4 A1A1W 503 A 1 HETATM 17 C C5 A1A1W . . . G 7 171.466 160.821 157.245 1 120.8 ? C5 A1A1W 503 A 1 HETATM 18 C C6 A1A1W . . . G 7 172.155 161.894 157.799 1 120.42 ? C6 A1A1W 503 A 1 HETATM 19 C C7 A1A1W . . . G 7 173.629 162.144 157.476 1 121.33 ? C7 A1A1W 503 A 1 HETATM 20 C C8 A1A1W . . . G 7 174.59 162.503 158.6 1 121.78 ? C8 A1A1W 503 A 1 HETATM 21 C C9 A1A1W . . . G 7 174.655 161.129 157.958 1 121.9 ? C9 A1A1W 503 A 1 HETATM 22 F F27 A1A1W . . . G 7 167.964 160.498 160.059 1 123.35 ? F27 A1A1W 503 A 1 HETATM 23 F F28 A1A1W . . . G 7 167.44 160.311 158.01 1 122.4 ? F28 A1A1W 503 A 1 HETATM 24 F F29 A1A1W . . . G 7 167.325 162.204 158.967 1 123.22 ? F29 A1A1W 503 A 1 HETATM 25 N N12 A1A1W . . . G 7 172.877 163.064 155.347 1 120.59 ? N12 A1A1W 503 A 1 HETATM 26 N N16 A1A1W . . . G 7 172.934 160.558 151.848 1 122.56 ? N16 A1A1W 503 A 1 HETATM 27 O O11 A1A1W . . . G 7 175.078 163.005 155.771 1 123.46 ? O11 A1A1W 503 A 1 HETATM 28 O O18 A1A1W . . . G 7 172.361 160.402 149.677 1 121.77 ? O18 A1A1W 503 A 1 HETATM 29 O O20 A1A1W . . . G 7 172.508 163.326 151.687 1 120.34 ? O20 A1A1W 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #